Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context SLC45A1 50651 broad.mit.edu 36 1 8313185 8313185 + Missense_Mutation SNP G G A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 8313185 8313185 SLC45A1 1 G G A 39 PTCHD2 57540 broad.mit.edu 36 1 11483988 11483988 + Missense_Mutation SNP C C T novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 11483988 11483988 PTCHD2 1 C C T 27 OSCP1 127700 broad.mit.edu 36 1 36660987 36660987 + Missense_Mutation SNP C C T novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 36660987 36660987 OSCP1 1 C C T 21 FLG 2312 broad.mit.edu 36 1 150545296 150545296 + Missense_Mutation SNP C C T novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 150545296 150545296 FLG 1 C C T 20 CRTC2 200186 broad.mit.edu 36 1 152188416 152188416 + Silent SNP T T A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 152188416 152188416 CRTC2 1 T T A 63 C1orf9 51430 broad.mit.edu 36 1 170787366 170787366 + Missense_Mutation SNP G G A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 170787366 170787366 C1orf9 1 G G A 45 TNR 7143 broad.mit.edu 36 1 173642136 173642136 + Missense_Mutation SNP G G C novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 173642136 173642136 TNR 1 G G C 44 TNR 7143 broad.mit.edu 36 1 173642441 173642441 + Missense_Mutation SNP C C A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 173642441 173642441 TNR 1 C C A 32 CRB1 23418 broad.mit.edu 36 1 195663207 195663207 + Missense_Mutation SNP A A G novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 195663207 195663207 CRB1 1 A A G 11 CACNA1S 779 broad.mit.edu 36 1 199327795 199327795 + Missense_Mutation SNP C C T novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 199327795 199327795 CACNA1S 1 C C T 28 KISS1 3814 broad.mit.edu 36 1 202428580 202428580 + Silent SNP G G T novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 202428580 202428580 KISS1 1 G G T 43 SYT14 255928 broad.mit.edu 36 1 208261190 208261190 + Missense_Mutation SNP A A T novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 208261190 208261190 SYT14 1 A A T 12 CNIH4 29097 broad.mit.edu 36 1 222625632 222625632 + Missense_Mutation SNP C C A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 222625632 222625632 CNIH4 1 C C A 17 LBR 3930 broad.mit.edu 36 1 223676487 223676487 + Missense_Mutation SNP G G C novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 223676487 223676487 LBR 1 G G C 42 HERC4 26091 broad.mit.edu 36 10 69362505 69362505 + Missense_Mutation SNP T T C novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 69362505 69362505 HERC4 10 T T C 52 FAM45A 404636 broad.mit.edu 36 10 120873066 120873066 + Missense_Mutation SNP G G A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 120873066 120873066 FAM45A 10 G G A 46 TUBGCP2 10844 broad.mit.edu 36 10 134945817 134945817 + Missense_Mutation SNP T T C novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 134945817 134945817 TUBGCP2 10 T T C 64 DKK3 27122 broad.mit.edu 36 11 11942730 11942730 + Missense_Mutation SNP C C G novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 11942730 11942730 DKK3 11 C C G 18 SLC43A3 29015 broad.mit.edu 36 11 56933999 56933999 + Missense_Mutation SNP G G C novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 56933999 56933999 SLC43A3 11 G G C 42 PDE2A 5138 broad.mit.edu 36 11 71974286 71974286 + Splice_Site_SNP SNP C C A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 71974286 71974286 PDE2A 11 C C A 24 STYK1 55359 broad.mit.edu 36 12 10671523 10671523 + Missense_Mutation SNP T T A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 10671523 10671523 STYK1 12 T T A 55 ACCN2 41 broad.mit.edu 36 12 48758091 48758091 + Missense_Mutation SNP A A T novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 48758091 48758091 ACCN2 12 A A T 15 GRIP1 23426 broad.mit.edu 36 12 65135508 65135508 + Silent SNP T T A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 65135508 65135508 GRIP1 12 T T A 59 E2F7 144455 broad.mit.edu 36 12 75947850 75947850 + Silent SNP A A T novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 75947850 75947850 E2F7 12 A A T 11 MGAT4C 25834 broad.mit.edu 36 12 84898326 84898326 + Missense_Mutation SNP A A C novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 84898326 84898326 MGAT4C 12 A A C 5 PARP4 143 broad.mit.edu 36 13 23958373 23958373 + Missense_Mutation SNP T T C novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 23958373 23958373 PARP4 13 T T C 63 TRPC4 7223 broad.mit.edu 36 13 37109452 37109452 + Missense_Mutation SNP T T G novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 37109452 37109452 TRPC4 13 T T G 50 OXGR1 27199 broad.mit.edu 36 13 96437261 96437261 + Missense_Mutation SNP C C T novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 96437261 96437261 OXGR1 13 C C T 19 ADCY4 196883 broad.mit.edu 36 14 23861158 23861158 + Missense_Mutation SNP G G A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 23861158 23861158 ADCY4 14 G G A 35 SPTBN5 51332 broad.mit.edu 36 15 39960656 39960656 + Silent SNP G G A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 39960656 39960656 SPTBN5 15 G G A 42 MYO5A 4644 broad.mit.edu 36 15 50476768 50476768 + Missense_Mutation SNP C C G novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 50476768 50476768 MYO5A 15 C C G 21 HERC1 8925 broad.mit.edu 36 15 61745371 61745371 + Silent SNP G G A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 61745371 61745371 HERC1 15 G G A 45 SLC2A4 6517 broad.mit.edu 36 17 7130597 7130597 + Silent SNP G G A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 7130597 7130597 SLC2A4 17 G G A 41 MYH13 8735 broad.mit.edu 36 17 10204062 10204062 + Nonsense_Mutation SNP A A T novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 10204062 10204062 MYH13 17 A A T 4 NF1 4763 broad.mit.edu 36 17 26533651 26533651 + Splice_Site_SNP SNP G G T novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 26533651 26533651 NF1 17 G G T 33 NF1 4763 broad.mit.edu 36 17 26678946 26678946 + Missense_Mutation SNP G G A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 26678946 26678946 NF1 17 G G A 38 KRT32 3882 broad.mit.edu 36 17 36869938 36869938 + Missense_Mutation SNP G G T novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 36869938 36869938 KRT32 17 G G T 42 G6PC3 92579 broad.mit.edu 36 17 39508223 39508223 + Silent SNP G G A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 39508223 39508223 G6PC3 17 G G A 45 ASXL3 80816 broad.mit.edu 36 18 29576967 29576967 + Missense_Mutation SNP A A T novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 29576967 29576967 ASXL3 18 A A T 10 WDR7 23335 broad.mit.edu 36 18 52509591 52509591 + Splice_Site_SNP SNP G G A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 52509591 52509591 WDR7 18 G G A 44 LRRC8E 80131 broad.mit.edu 36 19 7866518 7866518 + Silent SNP C C T novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 7866518 7866518 LRRC8E 19 C C T 29 ZNF491 126069 broad.mit.edu 36 19 11778484 11778484 + Missense_Mutation SNP G G T novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 11778484 11778484 ZNF491 19 G G T 41 UPF1 5976 broad.mit.edu 36 19 18827852 18827852 + Missense_Mutation SNP C C T novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 18827852 18827852 UPF1 19 C C T 22 EGLN2 112398 broad.mit.edu 36 19 45998876 45998876 + Missense_Mutation SNP C C T novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 45998876 45998876 EGLN2 19 C C T 27 PSG2 5670 broad.mit.edu 36 19 48277104 48277104 + Missense_Mutation SNP A A T novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 48277104 48277104 PSG2 19 A A T 7 PPP6R1 22870 broad.mit.edu 36 19 60439917 60439917 + Missense_Mutation SNP C C A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 60439917 60439917 PPP6R1 19 C C A 26 NRXN1 9378 broad.mit.edu 36 2 50553080 50553080 + Missense_Mutation SNP G G A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 50553080 50553080 NRXN1 2 G G A 48 RTN4 57142 broad.mit.edu 36 2 55106196 55106196 + Missense_Mutation SNP G G C novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 55106196 55106196 RTN4 2 G G C 33 FAM123C 205147 broad.mit.edu 36 2 131238031 131238031 + Missense_Mutation SNP C C G novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 131238031 131238031 FAM123C 2 C C G 22 ERMN 57471 broad.mit.edu 36 2 157886480 157886480 + Missense_Mutation SNP G G A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 157886480 157886480 ERMN 2 G G A 36 GAD1 2571 broad.mit.edu 36 2 171395746 171395746 + Missense_Mutation SNP A A T novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 171395746 171395746 GAD1 2 A A T 4 PDK1 5163 broad.mit.edu 36 2 173137530 173137531 + Missense_Mutation DNP CA CA AC novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 173137530 173137531 PDK1 2 CA CA AC 17 DGKD 8527 broad.mit.edu 36 2 234041851 234041851 + Missense_Mutation SNP C C A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 234041851 234041851 DGKD 2 C C A 18 BOK 666 broad.mit.edu 36 2 242150490 242150490 + Missense_Mutation SNP T T C novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 242150490 242150490 BOK 2 T T C 55 uc002wme.2 56261 broad.mit.edu 36 20 5476439 5476439 + Silent SNP G G A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 5476439 5476439 uc002wme.2 20 G G A 42 GHRH 2691 broad.mit.edu 36 20 35318268 35318268 + Missense_Mutation SNP A A C novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 35318268 35318268 GHRH 20 A A C 6 MATN4 8785 broad.mit.edu 36 20 43366781 43366781 + Silent SNP G G A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 43366781 43366781 MATN4 20 G G A 37 PHACTR3 116154 broad.mit.edu 36 20 57763775 57763775 + Missense_Mutation SNP G G A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 57763775 57763775 PHACTR3 20 G G A 41 TMEM50B 757 broad.mit.edu 36 21 33749915 33749915 + Silent SNP A A C novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 33749915 33749915 TMEM50B 21 A A C 13 C21orf33 8209 broad.mit.edu 36 21 44380437 44380437 + Missense_Mutation SNP C C A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 44380437 44380437 C21orf33 21 C C A 25 SLC35E4 339665 broad.mit.edu 36 22 29362922 29362922 + Missense_Mutation SNP T T C novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 29362922 29362922 SLC35E4 22 T T C 56 CYTH4 27128 broad.mit.edu 36 22 36035259 36035259 + Missense_Mutation SNP C C G novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 36035259 36035259 CYTH4 22 C C G 24 GTPBP1 9567 broad.mit.edu 36 22 37441971 37441971 + Missense_Mutation SNP G G C novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 37441971 37441971 GTPBP1 22 G G C 34 L3MBTL2 83746 broad.mit.edu 36 22 39939923 39939923 + Missense_Mutation SNP T T G novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 39939923 39939923 L3MBTL2 22 T T G 54 XRCC6 2547 broad.mit.edu 36 22 40379635 40379635 + Missense_Mutation SNP C C A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 40379635 40379635 XRCC6 22 C C A 24 CHKB 1120 broad.mit.edu 36 22 49367155 49367155 + Silent SNP G G A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 49367155 49367155 CHKB 22 G G A 38 ITPR1 3708 broad.mit.edu 36 3 4678822 4678822 + Silent SNP T T A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 4678822 4678822 ITPR1 3 T T A 54 GRM7 2917 broad.mit.edu 36 3 7595140 7595140 + Missense_Mutation SNP G G A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7595140 7595140 GRM7 3 G G A 37 TTC21A 199223 broad.mit.edu 36 3 39145335 39145335 + Missense_Mutation SNP G G A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 39145335 39145335 TTC21A 3 G G A 35 ZNF35 7584 broad.mit.edu 36 3 44676299 44676299 + Silent SNP G G A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 44676299 44676299 ZNF35 3 G G A 41 RTP1 132112 broad.mit.edu 36 3 188400438 188400438 + Silent SNP G G A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 188400438 188400438 RTP1 3 G G A 38 PIGG 54872 broad.mit.edu 36 4 514498 514498 + Missense_Mutation SNP G G A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 514498 514498 PIGG 4 G G A 46 MAN2B2 23324 broad.mit.edu 36 4 6650855 6650855 + Silent SNP T T A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 6650855 6650855 MAN2B2 4 T T A 55 RG9MTD2 93587 broad.mit.edu 36 4 100689519 100689519 + Missense_Mutation SNP C C G novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 100689519 100689519 RG9MTD2 4 C C G 30 PCDHA3 56145 broad.mit.edu 36 5 140163241 140163241 + Missense_Mutation SNP T T C novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 140163241 140163241 PCDHA3 5 T T C 59 PCDHA13 56136 broad.mit.edu 36 5 140242876 140242876 + Missense_Mutation SNP C C T novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 140242876 140242876 PCDHA13 5 C C T 29 FBXO38 81545 broad.mit.edu 36 5 147800981 147800981 + Missense_Mutation SNP G G A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 147800981 147800981 FBXO38 5 G G A 33 G3BP1 10146 broad.mit.edu 36 5 151159746 151159746 + Missense_Mutation SNP C C G novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 151159746 151159746 G3BP1 5 C C G 22 ITK 3702 broad.mit.edu 36 5 156577476 156577476 + Missense_Mutation SNP C C T novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 156577476 156577476 ITK 5 C C T 24 DOCK2 1794 broad.mit.edu 36 5 169368318 169368318 + Missense_Mutation SNP G G C novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 169368318 169368318 DOCK2 5 G G C 44 KCNMB1 3779 broad.mit.edu 36 5 169738505 169738505 + Silent SNP G G A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 169738505 169738505 KCNMB1 5 G G A 40 HIST1H4E 8367 broad.mit.edu 36 6 26313087 26313087 + Missense_Mutation SNP G G A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 26313087 26313087 HIST1H4E 6 G G A 38 B3GALT4 8705 broad.mit.edu 36 6 33353220 33353220 + Missense_Mutation SNP C C G novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 33353220 33353220 B3GALT4 6 C C G 28 CUL9 23113 broad.mit.edu 36 6 43262063 43262063 + Missense_Mutation SNP G G C novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 43262063 43262063 CUL9 6 G G C 33 LIN28B 389421 broad.mit.edu 36 6 105633035 105633035 + Missense_Mutation SNP C C T novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 105633035 105633035 LIN28B 6 C C T 24 TRDN 10345 broad.mit.edu 36 6 123933775 123933775 + Missense_Mutation SNP T T A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 123933775 123933775 TRDN 6 T T A 60 VNN1 8876 broad.mit.edu 36 6 133045988 133045988 + Missense_Mutation SNP C C G novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 133045988 133045988 VNN1 6 C C G 25 RNF216 54476 broad.mit.edu 36 7 5629094 5629094 + Missense_Mutation SNP C C T novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 5629094 5629094 RNF216 7 C C T 29 POLM 27434 broad.mit.edu 36 7 44085813 44085813 + Missense_Mutation SNP C C T novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 44085813 44085813 POLM 7 C C T 27 GTF2IRD1 9569 broad.mit.edu 36 7 73643201 73643201 + Missense_Mutation SNP C C A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 73643201 73643201 GTF2IRD1 7 C C A 22 CACNA2D1 781 broad.mit.edu 36 7 81429721 81429721 + Missense_Mutation SNP C C A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 81429721 81429721 CACNA2D1 7 C C A 20 PTPRZ1 5803 broad.mit.edu 36 7 121461622 121461622 + Missense_Mutation SNP C C A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 121461622 121461622 PTPRZ1 7 C C A 18 RP1L1 94137 broad.mit.edu 36 8 10518074 10518074 + Nonsense_Mutation SNP G G T novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 10518074 10518074 RP1L1 8 G G T 34 RAB11FIP1 80223 broad.mit.edu 36 8 37848787 37848787 + Silent SNP G G A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 37848787 37848787 RAB11FIP1 8 G G A 41 OSR2 116039 broad.mit.edu 36 8 100030740 100030740 + Silent SNP G G A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 100030740 100030740 OSR2 8 G G A 35 KLHL9 55958 broad.mit.edu 36 9 21323996 21323996 + Nonsense_Mutation SNP G G C novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 21323996 21323996 KLHL9 9 G G C 45 GABBR2 9568 broad.mit.edu 36 9 100095912 100095912 + Missense_Mutation SNP A A G novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 100095912 100095912 GABBR2 9 A A G 16 TLR4 7099 broad.mit.edu 36 9 119516716 119516716 + Missense_Mutation SNP G G A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 119516716 119516716 TLR4 9 G G A 41 HSPA5 3309 broad.mit.edu 36 9 127038923 127038923 + Silent SNP A A G novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 127038923 127038923 HSPA5 9 A A G 16 HSPA5 3309 broad.mit.edu 36 9 127040367 127040367 + Missense_Mutation SNP T T A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 127040367 127040367 HSPA5 9 T T A 49 SURF1 6834 broad.mit.edu 36 9 135208748 135208748 + Nonsense_Mutation SNP G G T novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 135208748 135208748 SURF1 9 G G T 48 NOTCH1 4851 broad.mit.edu 36 9 138527703 138527703 + Missense_Mutation SNP G G C novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 138527703 138527703 NOTCH1 9 G G C 44 WWC3 55841 broad.mit.edu 36 X 10044547 10044547 + Missense_Mutation SNP G G T novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 10044547 10044547 WWC3 23 G G T 35 RS1 6247 broad.mit.edu 36 X 18572495 18572495 + Nonsense_Mutation SNP G G C novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 18572495 18572495 RS1 23 G G C 48 PDHA1 5160 broad.mit.edu 36 X 19277365 19277365 + Silent SNP G G A novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 19277365 19277365 PDHA1 23 G G A 47 EFHC2 80258 broad.mit.edu 36 X 43922724 43922724 + Missense_Mutation SNP G G T novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 43922724 43922724 EFHC2 23 G G T 44 PQBP1 10084 broad.mit.edu 36 X 48644547 48644547 + Missense_Mutation SNP A A G novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 48644547 48644547 PQBP1 23 A A G 10 TRO 7216 broad.mit.edu 36 X 54966658 54966658 + Missense_Mutation SNP C C G novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 54966658 54966658 TRO 23 C C G 20 RGAG4 340526 broad.mit.edu 36 X 71267322 71267322 + Missense_Mutation SNP A A C novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 71267322 71267322 RGAG4 23 A A C 5 MTM1 4534 broad.mit.edu 36 X 149560547 149560547 + Missense_Mutation SNP C C T novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 149560547 149560547 MTM1 23 C C T 30 TP53 7157 broad.mit.edu 36 17 7518239 7518241 + In_Frame_Del DEL GTG - GTG novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad In_Frame_Del DEL 7518239 7518241 TP53 17 GTG - GTG 48 CNTNAP1 8506 broad.mit.edu 36 17 38096348 38096378 + Frame_Shift_Del DEL ATGGAGCGGCCATTCCTGGGGGCTATCCAGT - ATGGAGCGGCCATTCCTGGGGGCTATCCAGT novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 38096348 38096378 CNTNAP1 17 ATGGAGCGGCCATTCCTGGGGGCTATCCAGT - ATGGAGCGGCCATTCCTGGGGGCTATCCAGT 8 TBP 6908 broad.mit.edu 36 6 170712963 170712965 + In_Frame_Del DEL CAA - - novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad In_Frame_Del DEL 170712963 170712965 TBP 6 CAA - - 25 PRKDC 5591 broad.mit.edu 36 8 48963679 48963684 + In_Frame_Del DEL TACAGG - TACAGG novel Unknown TCGA-23-2078-01 TCGA-23-2078-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad In_Frame_Del DEL 48963679 48963684 PRKDC 8 TACAGG - TACAGG 61