Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context HSPG2 3339 broad.mit.edu 36 1 22050720 22050720 + Missense_Mutation SNP C C G novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 22050720 22050720 HSPG2 1 C C G 22 EPHB2 2048 broad.mit.edu 36 1 22983771 22983771 + Silent SNP A A C novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 22983771 22983771 EPHB2 1 A A C 7 CSMD2 114784 broad.mit.edu 36 1 33901210 33901210 + Silent SNP C C T novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 33901210 33901210 CSMD2 1 C C T 32 COL9A2 1298 broad.mit.edu 36 1 40549971 40549971 + Missense_Mutation SNP C C T novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 40549971 40549971 COL9A2 1 C C T 30 C1orf141 400757 broad.mit.edu 36 1 67331662 67331662 + Missense_Mutation SNP G G C novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 67331662 67331662 C1orf141 1 G G C 42 ST6GALNAC3 256435 broad.mit.edu 36 1 76552079 76552079 + Missense_Mutation SNP G G T novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 76552079 76552079 ST6GALNAC3 1 G G T 33 OVGP1 5016 broad.mit.edu 36 1 111765549 111765549 + Missense_Mutation SNP C C T novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 111765549 111765549 OVGP1 1 C C T 22 LCE2B 26239 broad.mit.edu 36 1 150926273 150926273 + Silent SNP C C T novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 150926273 150926273 LCE2B 1 C C T 28 ELF3 1999 broad.mit.edu 36 1 200246975 200246975 + Missense_Mutation SNP C C T novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 200246975 200246975 ELF3 1 C C T 30 PGBD5 79605 broad.mit.edu 36 1 228579888 228579888 + Nonsense_Mutation SNP G G A novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 228579888 228579888 PGBD5 1 G G A 46 ZNF670 93474 broad.mit.edu 36 1 245267814 245267814 + Missense_Mutation SNP C C T novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 245267814 245267814 ZNF670 1 C C T 29 FAM21C 253725 broad.mit.edu 36 10 45592816 45592816 + Missense_Mutation SNP G G C novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 45592816 45592816 FAM21C 10 G G C 33 PNLIPRP3 119548 broad.mit.edu 36 10 118210534 118210534 + Missense_Mutation SNP C C G novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 118210534 118210534 PNLIPRP3 10 C C G 26 PAOX 196743 broad.mit.edu 36 10 135044996 135044997 + Missense_Mutation DNP GG GG AA novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 135044996 135044997 PAOX 10 GG GG AA 39 MICAL2 9645 broad.mit.edu 36 11 12201551 12201551 + Silent SNP C C T novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 12201551 12201551 MICAL2 11 C C T 29 MICAL2 9645 broad.mit.edu 36 11 12220835 12220835 + Missense_Mutation SNP G G C novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 12220835 12220835 MICAL2 11 G G C 33 OR8K3 219473 broad.mit.edu 36 11 55842418 55842418 + Silent SNP C C A novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 55842418 55842418 OR8K3 11 C C A 31 TAF6L 10629 broad.mit.edu 36 11 62302026 62302026 + Missense_Mutation SNP G G A novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 62302026 62302026 TAF6L 11 G G A 42 FAT3 120114 broad.mit.edu 36 11 92239718 92239718 + Missense_Mutation SNP G G A novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 92239718 92239718 FAT3 11 G G A 38 KDELC2 143888 broad.mit.edu 36 11 107855403 107855403 + Silent SNP G G A novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 107855403 107855403 KDELC2 11 G G A 39 VSIG2 23584 broad.mit.edu 36 11 124127207 124127207 + Missense_Mutation SNP G G T novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 124127207 124127207 VSIG2 11 G G T 35 CAPZA3 93661 broad.mit.edu 36 12 18782876 18782876 + Missense_Mutation SNP G G C novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 18782876 18782876 CAPZA3 12 G G C 41 ALG10B 144245 broad.mit.edu 36 12 36997004 36997004 + Missense_Mutation SNP C C A novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 36997004 36997004 ALG10B 12 C C A 28 OR10A7 121364 broad.mit.edu 36 12 53901976 53901976 + Missense_Mutation SNP G G A novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 53901976 53901976 OR10A7 12 G G A 48 GALNT4 8693 broad.mit.edu 36 12 88442087 88442087 + Missense_Mutation SNP C C G novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 88442087 88442087 GALNT4 12 C C G 17 AMDHD1 144193 broad.mit.edu 36 12 94880356 94880356 + Silent SNP C C T novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 94880356 94880356 AMDHD1 12 C C T 21 ZFYVE26 23503 broad.mit.edu 36 14 67338572 67338572 + Missense_Mutation SNP G G A novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 67338572 67338572 ZFYVE26 14 G G A 38 TTLL5 23093 broad.mit.edu 36 14 75281651 75281651 + Silent SNP T T A novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 75281651 75281651 TTLL5 14 T T A 53 PDIA3 2923 broad.mit.edu 36 15 41826085 41826085 + Missense_Mutation SNP C C T novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 41826085 41826085 PDIA3 15 C C T 26 PAQR5 54852 broad.mit.edu 36 15 67483134 67483134 + Missense_Mutation SNP C C G novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 67483134 67483134 PAQR5 15 C C G 32 NPIPL3 23117 broad.mit.edu 36 16 21323772 21323772 + Missense_Mutation SNP G G C novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 21323772 21323772 NPIPL3 16 G G C 36 ESRP2 80004 broad.mit.edu 36 16 66822688 66822688 + Missense_Mutation SNP C C G novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 66822688 66822688 ESRP2 16 C C G 28 CLEC18B 497190 broad.mit.edu 36 16 73005038 73005038 + Missense_Mutation SNP C C T rs58016779 Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 73005038 73005038 CLEC18B 16 C C T 23 PKD1L2 114780 broad.mit.edu 36 16 79748026 79748026 + Missense_Mutation SNP C C T novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 79748026 79748026 PKD1L2 16 C C T 17 TP53 7157 broad.mit.edu 36 17 7519131 7519131 + Missense_Mutation SNP C C T rs28934578 Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7519131 7519131 TP53 17 C C T 27 CD300E 342510 broad.mit.edu 36 17 70125004 70125004 + Missense_Mutation SNP C C G novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 70125004 70125004 CD300E 17 C C G 32 TSEN54 283989 broad.mit.edu 36 17 71031376 71031376 + Missense_Mutation SNP G G C novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 71031376 71031376 TSEN54 17 G G C 45 SLC25A10 1468 broad.mit.edu 36 17 77293168 77293168 + Silent SNP C C G novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 77293168 77293168 SLC25A10 17 C C G 29 ZGLP1 100125288 broad.mit.edu 36 19 10276818 10276818 + Missense_Mutation SNP C C G novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 10276818 10276818 ZGLP1 19 C C G 32 MAN2B1 4125 broad.mit.edu 36 19 12635203 12635203 + Silent SNP C C A novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 12635203 12635203 MAN2B1 19 C C A 21 MAST1 22983 broad.mit.edu 36 19 12840505 12840505 + Missense_Mutation SNP A A G novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 12840505 12840505 MAST1 19 A A G 12 ZSWIM4 65249 broad.mit.edu 36 19 13784970 13784971 + Missense_Mutation DNP CC CC TG novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 13784970 13784971 ZSWIM4 19 CC CC TG 22 EMR3 84658 broad.mit.edu 36 19 14613392 14613392 + Missense_Mutation SNP C C T novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 14613392 14613392 EMR3 19 C C T 22 UNC13A 23025 broad.mit.edu 36 19 17646535 17646535 + Missense_Mutation SNP A A T novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 17646535 17646535 UNC13A 19 A A T 6 DYRK1B 9149 broad.mit.edu 36 19 45013011 45013011 + Missense_Mutation SNP C C G novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 45013011 45013011 DYRK1B 19 C C G 28 PXDN 7837 broad.mit.edu 36 2 1631032 1631032 + Missense_Mutation SNP T T G novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 1631032 1631032 PXDN 2 T T G 57 EIF2B4 8890 broad.mit.edu 36 2 27444154 27444154 + Missense_Mutation SNP A A G novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 27444154 27444154 EIF2B4 2 A A G 11 PROM2 150696 broad.mit.edu 36 2 95315987 95315987 + Missense_Mutation SNP G G A novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 95315987 95315987 PROM2 2 G G A 41 LRP2 4036 broad.mit.edu 36 2 169778553 169778553 + Missense_Mutation SNP G G T novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 169778553 169778553 LRP2 2 G G T 46 MTX2 10651 broad.mit.edu 36 2 176899855 176899855 + Missense_Mutation SNP G G A novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 176899855 176899855 MTX2 2 G G A 36 COL4A4 1286 broad.mit.edu 36 2 227580318 227580318 + Silent SNP G G T novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 227580318 227580318 COL4A4 2 G G T 45 SPHKAP 80309 broad.mit.edu 36 2 228564127 228564127 + Missense_Mutation SNP G G T novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 228564127 228564127 SPHKAP 2 G G T 42 GIGYF2 26058 broad.mit.edu 36 2 233392788 233392788 + Missense_Mutation SNP C C T novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 233392788 233392788 GIGYF2 2 C C T 28 AGXT 189 broad.mit.edu 36 2 241466192 241466192 + Missense_Mutation SNP C C A novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 241466192 241466192 AGXT 2 C C A 18 DNMT3B 1789 broad.mit.edu 36 20 30853861 30853861 + Missense_Mutation SNP G G T novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 30853861 30853861 DNMT3B 20 G G T 36 C20orf185 359710 broad.mit.edu 36 20 31108070 31108070 + Silent SNP T T C novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 31108070 31108070 C20orf185 20 T T C 55 RIMS4 140730 broad.mit.edu 36 20 42820154 42820154 + Missense_Mutation SNP G G A novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 42820154 42820154 RIMS4 20 G G A 39 ELMO2 63916 broad.mit.edu 36 20 44437793 44437793 + Missense_Mutation SNP T T A novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 44437793 44437793 ELMO2 20 T T A 51 CTCFL 140690 broad.mit.edu 36 20 55532494 55532494 + Missense_Mutation SNP G G T novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 55532494 55532494 CTCFL 20 G G T 48 ABCF3 55324 broad.mit.edu 36 3 185391721 185391721 + Missense_Mutation SNP A A T novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 185391721 185391721 ABCF3 3 A A T 11 HEATR7B2 133558 broad.mit.edu 36 5 41084285 41084285 + Missense_Mutation SNP C C G novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 41084285 41084285 HEATR7B2 5 C C G 26 ACOT12 134526 broad.mit.edu 36 5 80725571 80725571 + Missense_Mutation SNP C C A novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 80725571 80725571 ACOT12 5 C C A 25 GMPR 2766 broad.mit.edu 36 6 16398676 16398676 + Silent SNP T T A novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 16398676 16398676 GMPR 6 T T A 55 OR5V1 81696 broad.mit.edu 36 6 29431170 29431170 + Missense_Mutation SNP C C T novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 29431170 29431170 OR5V1 6 C C T 23 TFAP2D 83741 broad.mit.edu 36 6 50848343 50848343 + Missense_Mutation SNP C C T novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 50848343 50848343 TFAP2D 6 C C T 23 BAZ1B 9031 broad.mit.edu 36 7 72545112 72545112 + Missense_Mutation SNP T T A novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 72545112 72545112 BAZ1B 7 T T A 64 ABCB1 5243 broad.mit.edu 36 7 87011427 87011427 + Missense_Mutation SNP C C A novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 87011427 87011427 ABCB1 7 C C A 30 BAIAP2L1 55971 broad.mit.edu 36 7 97775009 97775009 + Missense_Mutation SNP C C G novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 97775009 97775009 BAIAP2L1 7 C C G 30 PLOD3 8985 broad.mit.edu 36 7 100636352 100636353 + Missense_Mutation DNP GT GT TG novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 100636352 100636353 PLOD3 7 GT GT TG 44 DENND2A 27147 broad.mit.edu 36 7 139948560 139948560 + Missense_Mutation SNP C C G novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 139948560 139948560 DENND2A 7 C C G 32 OR2A7 401427 broad.mit.edu 36 7 143586931 143586931 + Missense_Mutation SNP A A G novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 143586931 143586931 OR2A7 7 A A G 11 EIF3E 3646 broad.mit.edu 36 8 109309780 109309780 + Missense_Mutation SNP A A T novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 109309780 109309780 EIF3E 8 A A T 3 ASAP1 50807 broad.mit.edu 36 8 131142388 131142388 + Silent SNP T T C novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 131142388 131142388 ASAP1 8 T T C 54 ERMP1 79956 broad.mit.edu 36 9 5791200 5791200 + Silent SNP C C G novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 5791200 5791200 ERMP1 9 C C G 31 TMEM2 23670 broad.mit.edu 36 9 73555065 73555065 + Silent SNP T T C novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 73555065 73555065 TMEM2 9 T T C 60 VAV2 7410 broad.mit.edu 36 9 135667107 135667107 + Missense_Mutation SNP C C G novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 135667107 135667107 VAV2 9 C C G 24 THOC2 57187 broad.mit.edu 36 X 122587577 122587577 + Missense_Mutation SNP G G C novel Unknown TCGA-23-2077-01 TCGA-23-2077-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 122587577 122587577 THOC2 23 G G C 48