Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context ADD1 118 genome.wustl.edu 36 4 2886435 2886435 + Silent SNP C T T novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 2886435 2886435 ADD1 4 C T T 21 CLPP 8192 genome.wustl.edu 36 19 6319570 6319570 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 6319570 6319570 CLPP 19 G G A 38 TP53 7157 genome.wustl.edu 36 17 7517839 7517839 + Missense_Mutation SNP C T T novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7517839 7517839 TP53 17 C T T 17 ADCY2 108 genome.wustl.edu 36 5 7765987 7765987 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7765987 7765987 ADCY2 5 C C G 25 TPTE 7179 genome.wustl.edu 36 21 9955923 9955923 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 9955923 9955923 TPTE 21 C C T 17 DNAH5 1767 genome.wustl.edu 36 5 13903804 13903804 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 13903804 13903804 DNAH5 5 G G T 48 ZMYM2 7750 genome.wustl.edu 36 13 19539011 19539011 + Silent SNP A A G novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 19539011 19539011 ZMYM2 13 A A G 16 CDH18 1016 genome.wustl.edu 36 5 19607578 19607578 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 19607578 19607578 CDH18 5 C C A 17 CHD8 57680 genome.wustl.edu 36 14 20940373 20940373 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 20940373 20940373 CHD8 14 G G C 34 DNAH11 8701 genome.wustl.edu 36 7 21872754 21872754 + Missense_Mutation SNP A A C novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 21872754 21872754 DNAH11 7 A A C 9 DSG1 1828 genome.wustl.edu 36 18 27167633 27167633 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 27167633 27167633 DSG1 18 C C A 17 LOC100133224 genome.wustl.edu 36 22 29882241 29882241 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 C C C T C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 29882241 29882241 LOC100133224 22 C C T 19 HLA-G 3135 genome.wustl.edu 36 6 29905345 29905345 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 29905345 29905345 HLA-G 6 C C T 18 CDH6 1004 genome.wustl.edu 36 5 31359020 31359020 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 31359020 31359020 CDH6 5 G G A 45 CTNNB1 1499 genome.wustl.edu 36 3 41241891 41241891 + Silent SNP C T T novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 41241891 41241891 CTNNB1 3 C T T 19 SCUBE1 80274 genome.wustl.edu 36 22 41944370 41944370 + Nonsense_Mutation SNP G A A novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 G G A A G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 41944370 41944370 SCUBE1 22 G A A 48 GRAMD4 23151 genome.wustl.edu 36 22 45401479 45401479 + Missense_Mutation SNP T A A novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 T T A A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 45401479 45401479 GRAMD4 22 T A A 57 LRCH1 23143 genome.wustl.edu 36 13 46195380 46195380 + Missense_Mutation SNP T T A novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 46195380 46195380 LRCH1 13 T T A 64 EHBP1 23301 genome.wustl.edu 36 2 62955168 62955168 + Silent SNP T T C novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 62955168 62955168 EHBP1 2 T T C 53 PELI3 246330 genome.wustl.edu 36 11 65997320 65997320 + Silent SNP C C T novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 65997320 65997320 PELI3 11 C C T 31 ZNF407 55628 genome.wustl.edu 36 18 70718207 70718207 + Missense_Mutation SNP A A T novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 A A A T A A Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 70718207 70718207 ZNF407 18 A A T 2 RGNEF 64283 genome.wustl.edu 36 5 73105497 73105497 + Silent SNP C T T novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 73105497 73105497 RGNEF 5 C T T 22 RNF213 57674 genome.wustl.edu 36 17 75964828 75964828 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 75964828 75964828 RNF213 17 G G A 45 ROBO1 6091 genome.wustl.edu 36 3 78767801 78767801 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 78767801 78767801 ROBO1 3 C C T 19 IL16 3603 genome.wustl.edu 36 15 79372265 79372265 + Silent SNP G A A novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 79372265 79372265 IL16 15 G A A 38 VCAN 1462 genome.wustl.edu 36 5 82851613 82851613 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 82851613 82851613 VCAN 5 G G A 45 FOXN3 1112 genome.wustl.edu 36 14 88698683 88698683 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 88698683 88698683 FOXN3 14 G G A 48 TGIF2LX 90316 genome.wustl.edu 36 X 89063758 89063758 + Silent SNP C T T novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 89063758 89063758 TGIF2LX 23 C T T 19 GBP2 2634 genome.wustl.edu 36 1 89358540 89358540 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 89358540 89358540 GBP2 1 G G A 41 DYNC1I1 1780 genome.wustl.edu 36 7 95280548 95280548 + Nonsense_Mutation SNP G G T novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 95280548 95280548 DYNC1I1 7 G G T 47 SRRT 51593 genome.wustl.edu 36 7 100323649 100323649 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 100323649 100323649 SRRT 7 C C A 21 CCDC63 160762 genome.wustl.edu 36 12 109780780 109780780 + Missense_Mutation SNP A A C novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 109780780 109780780 CCDC63 12 A A C 12 C7orf60 154743 genome.wustl.edu 36 7 112322977 112322977 + Missense_Mutation SNP T T A novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 112322977 112322977 C7orf60 7 T T A 50 GPR85 54329 genome.wustl.edu 36 7 112511041 112511041 + Silent SNP A A G novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 112511041 112511041 GPR85 7 A A G 7 SLC12A2 6558 genome.wustl.edu 36 5 127514866 127514866 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 127514866 127514866 SLC12A2 5 G G T 41 uc003vym.2 0 genome.wustl.edu 36 7 141819621 141819621 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 141819621 141819621 uc003vym.2 7 C C A 30 CRNN 49860 genome.wustl.edu 36 1 150650016 150650016 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 150650016 150650016 CRNN 1 C C T 29 IFI16 3428 genome.wustl.edu 36 1 157290096 157290096 + Silent SNP G G A novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 157290096 157290096 IFI16 1 G G A 41 MPZL1 9019 genome.wustl.edu 36 1 166001554 166001554 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 166001554 166001554 MPZL1 1 G G A 39 RNASEL 6041 genome.wustl.edu 36 1 180811317 180811317 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 180811317 180811317 RNASEL 1 C C T 32 UFM1 51569 genome.wustl.edu 36 13 37826430 37826441 + Frame_Shift_Del DEL AGAAGTAAGTAC AGAAGTAAGTAC - novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 AGAAGTAAGTAC AGAAGTAAGTAC Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 37826430 37826441 UFM1 13 AGAAGTAAGTAC AGAAGTAAGTAC - 3 MALAT1 378938 genome.wustl.edu 36 11 65028263 65028264 + Frame_Shift_Ins INS - - GA novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 - - Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Ins INS 65028263 65028264 MALAT1 11 - - GA 51 FAM58B 339521 genome.wustl.edu 36 1 198449327 198449350 + In_Frame_Del DEL GAGGACGCCGGAGAGGAGGCCGGA GAGGACGCCGGAGAGGAGGCCGGA - novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 GAGGACGCCGGAGAGGAGGCCGGA GAGGACGCCGGAGAGGAGGCCGGA GAGGACGCCGGAGAGGAGGCCGGA - GAGGACGCCGGAGAGGAGGCCGGA - Unknown Valid Germline 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU In_Frame_Del DEL 198449327 198449350 FAM58B 1 GAGGACGCCGGAGAGGAGGCCGGA GAGGACGCCGGAGAGGAGGCCGGA - 41 SVIL 6840 genome.wustl.edu 36 10 29799398 29799398 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 29799398 29799398 SVIL 10 C C T 19 ERN2 10595 genome.wustl.edu 36 16 23623881 23623881 + Silent SNP G A A novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 23623881 23623881 ERN2 16 G A A 38 C19orf62 29086 genome.wustl.edu 36 19 17243464 17243464 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 17243464 17243464 C19orf62 19 G G T 43 RASSF1 11186 genome.wustl.edu 36 3 50343846 50343846 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 50343846 50343846 RASSF1 3 G G A 38 ANKRD17 26057 genome.wustl.edu 36 4 74175270 74175270 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1491-01 TCGA-13-1491-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 74175270 74175270 ANKRD17 4 C C G 32