Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context BAI2 576 broad.mit.edu 36 1 31979906 31979906 + Missense_Mutation SNP A A C novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 A C A A Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 31979906 31979906 BAI2 1 A A C 8 SGIP1 84251 broad.mit.edu 36 1 66920155 66920155 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 C A C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 66920155 66920155 SGIP1 1 C C A 26 RORC 6097 broad.mit.edu 36 1 150052047 150052047 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 150052047 150052047 RORC 1 G G A 39 PEAR1 375033 broad.mit.edu 36 1 155149369 155149369 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 155149369 155149369 PEAR1 1 G G A 38 FAM190B 54462 broad.mit.edu 36 10 86121396 86121396 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 86121396 86121396 FAM190B 10 T T C 61 COL17A1 1308 broad.mit.edu 36 10 105827221 105827221 + Silent SNP G G T novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 G T G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 105827221 105827221 COL17A1 10 G G T 39 MKI67 4288 broad.mit.edu 36 10 129797435 129797435 + Silent SNP G G A novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 G A G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 129797435 129797435 MKI67 10 G G A 34 ANO3 63982 broad.mit.edu 36 11 26638567 26638567 + Silent SNP G G A novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 G A G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 26638567 26638567 ANO3 11 G G A 36 CARD17 440068 broad.mit.edu 36 11 104477348 104477348 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 C G C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 104477348 104477348 CARD17 11 C C G 26 TUBA3C 7278 broad.mit.edu 36 13 18646092 18646092 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 18646092 18646092 TUBA3C 13 G G C 39 DYNC1H1 1778 broad.mit.edu 36 14 101586624 101586624 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 101586624 101586624 DYNC1H1 14 C C T 27 FBXL16 146330 broad.mit.edu 36 16 685880 685880 + Silent SNP C C G novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 685880 685880 FBXL16 16 C C G 23 HYDIN 54768 broad.mit.edu 36 16 69512219 69512219 + Missense_Mutation SNP T T G rs67115747 Unknown TCGA-13-1487-01 TCGA-13-1487-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 69512219 69512219 HYDIN 16 T T G 59 TP53 7157 broad.mit.edu 36 17 7518296 7518296 + Missense_Mutation SNP A A T novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7518296 7518296 TP53 17 A A T 8 SLC5A10 125206 broad.mit.edu 36 17 18813408 18813408 + Silent SNP C C T novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 18813408 18813408 SLC5A10 17 C C T 19 ALDOC 230 broad.mit.edu 36 17 23924969 23924969 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 G A G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 23924969 23924969 ALDOC 17 G G A 38 KRT13 3860 broad.mit.edu 36 17 36911044 36911044 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 36911044 36911044 KRT13 17 C C T 19 JUP 3728 broad.mit.edu 36 17 37172789 37172789 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 T C T T Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 37172789 37172789 JUP 17 T T C 60 EPB41L3 23136 broad.mit.edu 36 18 5424019 5424019 + Missense_Mutation SNP T T A novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 T A T T Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 5424019 5424019 EPB41L3 18 T T A 54 NOL4 8715 broad.mit.edu 36 18 29777135 29777135 + Silent SNP T T C novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 T C T T Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 29777135 29777135 NOL4 18 T T C 58 SERPINB13 5275 broad.mit.edu 36 18 59411136 59411136 + Silent SNP C C T novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 59411136 59411136 SERPINB13 18 C C T 23 TSHZ1 10194 broad.mit.edu 36 18 71127104 71127104 + Missense_Mutation SNP A A T novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 71127104 71127104 TSHZ1 18 A A T 7 MED26 9441 broad.mit.edu 36 19 16547872 16547872 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 16547872 16547872 MED26 19 C C T 27 NLRP11 204801 broad.mit.edu 36 19 60999347 60999347 + Silent SNP C C G novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 60999347 60999347 NLRP11 19 C C G 29 ZNF773 374928 broad.mit.edu 36 19 62707958 62707958 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 C A C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 62707958 62707958 ZNF773 19 C C A 26 TTC15 51112 broad.mit.edu 36 2 3448385 3448385 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 3448385 3448385 TTC15 2 T T C 55 GLI2 2736 broad.mit.edu 36 2 121463541 121463541 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 121463541 121463541 GLI2 2 G G A 34 COL4A4 1286 broad.mit.edu 36 2 227651005 227651005 + Silent SNP T T C novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 T C T T Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 227651005 227651005 COL4A4 2 T T C 56 INSM1 3642 broad.mit.edu 36 20 20298306 20298306 + Silent SNP C C G novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 20298306 20298306 INSM1 20 C C G 23 CST3 1471 broad.mit.edu 36 20 23563890 23563890 + Splice_Site_SNP SNP C C A novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 23563890 23563890 CST3 20 C C A 18 ZNF335 63925 broad.mit.edu 36 20 44030397 44030397 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 44030397 44030397 ZNF335 20 C C G 17 SLC12A5 57468 broad.mit.edu 36 20 44111793 44111793 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 G A G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 44111793 44111793 SLC12A5 20 G G A 42 STAC 6769 broad.mit.edu 36 3 36509724 36509724 + Silent SNP C C T novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 36509724 36509724 STAC 3 C C T 27 PRKCI 5584 broad.mit.edu 36 3 171482391 171482391 + Missense_Mutation SNP T T G novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 T G T T Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 171482391 171482391 PRKCI 3 T T G 51 CCNA2 890 broad.mit.edu 36 4 122961670 122961670 + Missense_Mutation SNP T T G novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 T G T T Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 122961670 122961670 CCNA2 4 T T G 52 CDH9 1007 broad.mit.edu 36 5 26921537 26921537 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 26921537 26921537 CDH9 5 C C T 28 PARP8 79668 broad.mit.edu 36 5 50164406 50164406 + Silent SNP C C T novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 50164406 50164406 PARP8 5 C C T 19 WWC1 23286 broad.mit.edu 36 5 167824343 167824343 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 167824343 167824343 WWC1 5 G G A 40 ITPR3 3710 broad.mit.edu 36 6 33747782 33747782 + Splice_Site_SNP SNP A A G novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 33747782 33747782 ITPR3 6 A A G 7 C6orf142 90523 broad.mit.edu 36 6 54097349 54097349 + Silent SNP A A C novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 54097349 54097349 C6orf142 6 A A C 5 MTO1 25821 broad.mit.edu 36 6 74248501 74248501 + Silent SNP C C A novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 74248501 74248501 MTO1 6 C C A 29 SYNE1 23345 broad.mit.edu 36 6 152818386 152818386 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 152818386 152818386 SYNE1 6 C C G 28 ZNF713 349075 broad.mit.edu 36 7 55958463 55958463 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 C A C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 55958463 55958463 ZNF713 7 C C A 32 EYA1 2138 broad.mit.edu 36 8 72396627 72396627 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 G C G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 72396627 72396627 EYA1 8 G G C 36 SON 6651 broad.mit.edu 36 21 33847482 33847505 + In_Frame_Del DEL GTCCTGGAGTCTTCGGCTGTGACC - GTCCTGGAGTCTTCGGCTGTGACC novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad In_Frame_Del DEL 33847482 33847505 SON 21 GTCCTGGAGTCTTCGGCTGTGACC - GTCCTGGAGTCTTCGGCTGTGACC 48 SNRK 54861 broad.mit.edu 36 3 43364896 43364899 + Frame_Shift_Del DEL CCAC - CCAC novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 43364896 43364899 SNRK 3 CCAC - CCAC 18 FOXO3 2309 broad.mit.edu 36 6 109092241 109092242 + Frame_Shift_Ins INS - C - novel Unknown TCGA-13-1487-01 TCGA-13-1487-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Ins INS 109092241 109092242 FOXO3 6 - C - 52