Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context CHD4 1108 genome.wustl.edu 36 12 6571444 6571444 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1412-01 TCGA-13-1412-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 6571444 6571444 CHD4 12 G G A 36 TP53 7157 genome.wustl.edu 36 17 7518295 7518295 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1412-01 TCGA-13-1412-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7518295 7518295 TP53 17 C C A 17 TLR8 51311 genome.wustl.edu 36 X 12848802 12848802 + Silent SNP A A T novel Unknown TCGA-13-1412-01 TCGA-13-1412-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 12848802 12848802 TLR8 23 A A T 6 BRD4 23476 genome.wustl.edu 36 19 15237429 15237429 + Silent SNP C C G novel Unknown TCGA-13-1412-01 TCGA-13-1412-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 15237429 15237429 BRD4 19 C C G 23 MPP7 143098 genome.wustl.edu 36 10 28448650 28448650 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1412-01 TCGA-13-1412-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 28448650 28448650 MPP7 10 C C G 30 ZNF658 26149 genome.wustl.edu 36 9 40763969 40763969 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1412-01 TCGA-13-1412-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 40763969 40763969 ZNF658 9 C C T 22 ZBP1 81030 genome.wustl.edu 36 20 55624752 55624752 + Silent SNP A A C novel Unknown TCGA-13-1412-01 TCGA-13-1412-10 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 55624752 55624752 ZBP1 20 A A C 7 KCNH5 27133 genome.wustl.edu 36 14 62486626 62486626 + Silent SNP C C T novel Unknown TCGA-13-1412-01 TCGA-13-1412-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 62486626 62486626 KCNH5 14 C C T 23 CILP 8483 genome.wustl.edu 36 15 63277777 63277777 + Missense_Mutation SNP T T A novel Unknown TCGA-13-1412-01 TCGA-13-1412-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 63277777 63277777 CILP 15 T T A 59 SYT12 91683 genome.wustl.edu 36 11 66567861 66567861 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1412-01 TCGA-13-1412-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 66567861 66567861 SYT12 11 G G T 34 CCAR1 55749 genome.wustl.edu 36 10 70166669 70166669 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1412-01 TCGA-13-1412-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 70166669 70166669 CCAR1 10 T T C 56 C10orf35 219738 genome.wustl.edu 36 10 71062718 71062718 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1412-01 TCGA-13-1412-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 71062718 71062718 C10orf35 10 C C A 23 MBTPS1 8720 genome.wustl.edu 36 16 82672933 82672933 + Silent SNP G G C novel Unknown TCGA-13-1412-01 TCGA-13-1412-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 82672933 82672933 MBTPS1 16 G G C 45 ENSG00000204562 0 genome.wustl.edu 36 9 83722917 83722917 + Silent SNP A A C novel Unknown TCGA-13-1412-01 TCGA-13-1412-10 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 83722917 83722917 ENSG00000204562 9 A A C 15 SNRNP200 23020 genome.wustl.edu 36 2 96332777 96332777 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1412-01 TCGA-13-1412-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 96332777 96332777 SNRNP200 2 C C G 24 OR5H6 79295 genome.wustl.edu 36 3 99466357 99466357 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1412-01 TCGA-13-1412-10 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 99466357 99466357 OR5H6 3 T T C 62 MUC17 140453 genome.wustl.edu 36 7 100473717 100473717 + Silent SNP A A C novel Unknown TCGA-13-1412-01 TCGA-13-1412-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 100473717 100473717 MUC17 7 A A C 6 PKD2L1 9033 genome.wustl.edu 36 10 102049456 102049456 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1412-01 TCGA-13-1412-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 102049456 102049456 PKD2L1 10 C C A 30 THOC2 57187 genome.wustl.edu 36 X 122588069 122588069 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1412-01 TCGA-13-1412-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 122588069 122588069 THOC2 23 G G T 48 MRRF 92399 genome.wustl.edu 36 9 124073039 124073039 + Silent SNP C C T novel Unknown TCGA-13-1412-01 TCGA-13-1412-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 124073039 124073039 MRRF 9 C C T 25 DDX25 29118 genome.wustl.edu 36 11 125292231 125292231 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1412-01 TCGA-13-1412-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 125292231 125292231 DDX25 11 G G C 33 IGSF1 3547 genome.wustl.edu 36 X 130236275 130236275 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1412-01 TCGA-13-1412-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 130236275 130236275 IGSF1 23 G G C 35 PLEKHB2 55041 genome.wustl.edu 36 2 131620728 131620728 + Missense_Mutation SNP A A T novel Unknown TCGA-13-1412-01 TCGA-13-1412-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 131620728 131620728 PLEKHB2 2 A A T 16 NUP214 8021 genome.wustl.edu 36 9 133040820 133040820 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1412-01 TCGA-13-1412-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 133040820 133040820 NUP214 9 C C G 29 C9orf171 genome.wustl.edu 36 9 134364726 134364726 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1412-01 TCGA-13-1412-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 134364726 134364726 C9orf171 9 C C T 23 SV2A 9900 genome.wustl.edu 36 1 148151531 148151531 + Silent SNP G G A novel Unknown TCGA-13-1412-01 TCGA-13-1412-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 148151531 148151531 SV2A 1 G G A 42 PDE6A 5145 genome.wustl.edu 36 5 149304423 149304423 + Nonsense_Mutation SNP C C A novel Unknown TCGA-13-1412-01 TCGA-13-1412-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 149304423 149304423 PDE6A 5 C C A 31 CSAG1 158511 genome.wustl.edu 36 X 151659815 151659815 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1412-01 TCGA-13-1412-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 151659815 151659815 CSAG1 23 G G T 35 CLIC2 1193 genome.wustl.edu 36 X 154181291 154181291 + Splice_Site_SNP SNP C C T novel Unknown TCGA-13-1412-01 TCGA-13-1412-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 154181291 154181291 CLIC2 23 C C T 18 SCN9A 6335 genome.wustl.edu 36 2 166837176 166837176 + Silent SNP C C T novel Unknown TCGA-13-1412-01 TCGA-13-1412-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 166837176 166837176 SCN9A 2 C C T 23 TTN 7273 genome.wustl.edu 36 2 179139089 179139089 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1412-01 TCGA-13-1412-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 179139089 179139089 TTN 2 C C G 20 CACNA1E 777 genome.wustl.edu 36 1 179974914 179974914 + Silent SNP C C T novel Unknown TCGA-13-1412-01 TCGA-13-1412-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 179974914 179974914 CACNA1E 1 C C T 18 EIF2B5 8893 genome.wustl.edu 36 3 185343261 185343261 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1412-01 TCGA-13-1412-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 185343261 185343261 EIF2B5 3 G G A 41 KCNT2 343450 genome.wustl.edu 36 1 194665328 194665328 + Splice_Site_SNP SNP A A T novel Unknown TCGA-13-1412-01 TCGA-13-1412-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 194665328 194665328 KCNT2 1 A A T 14 ACAP2 23527 genome.wustl.edu 36 3 196494311 196494311 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1412-01 TCGA-13-1412-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 196494311 196494311 ACAP2 3 G G A 38 NUMA1 4926 genome.wustl.edu 36 11 71404009 71404023 + In_Frame_Del DEL CCAGGGCATCTGCAG CCAGGGCATCTGCAG - novel Unknown TCGA-13-1412-01 TCGA-13-1412-10 CCAGGGCATCTGCAG CCAGGGCATCTGCAG CCAGGGCATCTGCAG - CCAGGGCATCTGCAG CCAGGGCATCTGCAG Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU In_Frame_Del DEL 71404009 71404023 NUMA1 11 CCAGGGCATCTGCAG CCAGGGCATCTGCAG - 30 FLG 2312 genome.wustl.edu 36 1 150544733 150544733 + Missense_Mutation SNP C C G Unknown TCGA-13-1412-01 TCGA-13-1412-10 C C C G C C Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 150544733 150544733 FLG 1 C C G 24 KIAA1755 85449 genome.wustl.edu 36 20 36274961 36274961 + Missense_Mutation SNP C C G Unknown TCGA-13-1412-01 TCGA-13-1412-10 C C C G C C Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 36274961 36274961 KIAA1755 20 C C G 28 IRAK1 3654 genome.wustl.edu 36 X 152938100 152938100 + Missense_Mutation SNP G G A Unknown TCGA-13-1412-01 TCGA-13-1412-10 G G G A G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 152938100 152938100 IRAK1 23 G G A 39