Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context NSUN2 54888 genome.wustl.edu 36 5 6653248 6653248 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 6653248 6653248 NSUN2 5 G G A 33 CD163L1 283316 genome.wustl.edu 36 12 7477386 7477386 + Missense_Mutation SNP C T T novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7477386 7477386 CD163L1 12 C T T 19 TP53 7157 genome.wustl.edu 36 17 7520036 7520036 + Splice_Site_SNP SNP C A A novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 C C A A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 7520036 7520036 TP53 17 C A A 18 GRM7 2917 genome.wustl.edu 36 3 7595692 7595692 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7595692 7595692 GRM7 3 C C T 17 TAS2R1 50834 genome.wustl.edu 36 5 9682459 9682459 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 9682459 9682459 TAS2R1 5 G G C 33 GLRA2 2742 genome.wustl.edu 36 X 14537180 14537180 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 14537180 14537180 GLRA2 23 G G A 38 ITGA8 8516 genome.wustl.edu 36 10 15640161 15640161 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 15640161 15640161 ITGA8 10 C C T 31 NDE1 54820 genome.wustl.edu 36 16 15698143 15698143 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 15698143 15698143 NDE1 16 C C A 32 ABCC1 4363 genome.wustl.edu 36 16 16116180 16116180 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 16116180 16116180 ABCC1 16 C C T 23 ATP13A2 23400 genome.wustl.edu 36 1 17203855 17203855 + Silent SNP C C A novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 17203855 17203855 ATP13A2 1 C C A 23 STAM 8027 genome.wustl.edu 36 10 17770087 17770087 + Missense_Mutation SNP A A G novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 17770087 17770087 STAM 10 A A G 9 DTD1 92675 genome.wustl.edu 36 20 18672892 18672892 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 18672892 18672892 DTD1 20 C C G 23 POLA1 5422 genome.wustl.edu 36 X 24642655 24642655 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 24642655 24642655 POLA1 23 C C T 23 KCNE1 3753 genome.wustl.edu 36 21 34743717 34743717 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 34743717 34743717 KCNE1 21 C C T 26 UGT3A2 167127 genome.wustl.edu 36 5 36071727 36071727 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 36071727 36071727 UGT3A2 5 C C T 27 CDKN1A 1026 genome.wustl.edu 36 6 36760275 36760275 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 36760275 36760275 CDKN1A 6 G G A 37 FAM83D 81610 genome.wustl.edu 36 20 37013649 37013649 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 37013649 37013649 FAM83D 20 G G T 42 CSNK1E 1454 genome.wustl.edu 36 22 37026724 37026724 + Missense_Mutation SNP G T T novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 G G T T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 37026724 37026724 CSNK1E 22 G T T 44 C7orf10 79783 genome.wustl.edu 36 7 40280676 40280676 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 40280676 40280676 C7orf10 7 C C T 32 LRFN2 57497 genome.wustl.edu 36 6 40468280 40468280 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 40468280 40468280 LRFN2 6 G G C 42 ZNF167 55888 genome.wustl.edu 36 3 44587521 44587521 + Nonsense_Mutation SNP G G T novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 44587521 44587521 ZNF167 3 G G T 45 GABRA2 2555 genome.wustl.edu 36 4 46000233 46000233 + Splice_Site_SNP SNP C C A novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 46000233 46000233 GABRA2 4 C C A 18 C21orf57 54059 genome.wustl.edu 36 21 46535743 46535743 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 46535743 46535743 C21orf57 21 T T C 53 SNTG1 54212 genome.wustl.edu 36 8 51867822 51867822 + Nonsense_Mutation SNP C C A novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 51867822 51867822 SNTG1 8 C C A 25 C6orf142 90523 genome.wustl.edu 36 6 54230083 54230083 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 54230083 54230083 C6orf142 6 G G A 42 ERC2 26059 genome.wustl.edu 36 3 56305322 56305322 + Nonsense_Mutation SNP A A T novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 56305322 56305322 ERC2 3 A A T 5 C20orf177 63939 genome.wustl.edu 36 20 57953306 57953306 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 57953306 57953306 C20orf177 20 C C T 27 OR4D11 219986 genome.wustl.edu 36 11 59028161 59028161 + Silent SNP C C T novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 59028161 59028161 OR4D11 11 C C T 27 LAIR1 3903 genome.wustl.edu 36 19 59559791 59559791 + Missense_Mutation SNP C G G novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 C C G G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 59559791 59559791 LAIR1 19 C G G 32 LOC644578 644578 genome.wustl.edu 36 4 63899106 63899106 + Missense_Mutation SNP G A A novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 63899106 63899106 LOC644578 4 G A A 33 SGK3 23678 genome.wustl.edu 36 8 67906081 67906081 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 67906081 67906081 SGK3 8 G G C 41 WBSCR17 64409 genome.wustl.edu 36 7 70772925 70772925 + Missense_Mutation SNP A A C novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 70772925 70772925 WBSCR17 7 A A C 1 C4orf35 85438 genome.wustl.edu 36 4 71235833 71235833 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 71235833 71235833 C4orf35 4 C C G 32 P2RY2 5029 genome.wustl.edu 36 11 72623231 72623231 + Missense_Mutation SNP A A T novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 72623231 72623231 P2RY2 11 A A T 8 MYCBP2 23077 genome.wustl.edu 36 13 76638566 76638566 + Missense_Mutation SNP C G G novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 C C G G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 76638566 76638566 MYCBP2 13 C G G 30 ANGPTL5 253935 genome.wustl.edu 36 11 101278578 101278578 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 101278578 101278578 ANGPTL5 11 G G A 33 SLC41A2 84102 genome.wustl.edu 36 12 103845916 103845916 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 103845916 103845916 SLC41A2 12 T T C 60 ADCY5 111 genome.wustl.edu 36 3 124492813 124492813 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 124492813 124492813 ADCY5 3 C C T 27 MEGF10 84466 genome.wustl.edu 36 5 126820869 126820869 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 126820869 126820869 MEGF10 5 G G C 36 ACTRT1 139741 genome.wustl.edu 36 X 127012919 127012919 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 127012919 127012919 ACTRT1 23 C C G 24 ADAM12 8038 genome.wustl.edu 36 10 127833840 127833840 + Silent SNP C C T novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 127833840 127833840 ADAM12 10 C C T 23 PCDHGB6 56100 genome.wustl.edu 36 5 140769297 140769297 + Silent SNP C C T novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 140769297 140769297 PCDHGB6 5 C C T 19 PCOLCE2 26577 genome.wustl.edu 36 3 144044538 144044538 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 144044538 144044538 PCOLCE2 3 G G T 33 FLG2 388698 genome.wustl.edu 36 1 150593530 150593530 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 150593530 150593530 FLG2 1 C C A 30 MLL3 58508 genome.wustl.edu 36 7 151491555 151491555 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 151491555 151491555 MLL3 7 T T C 52 MED12L 116931 genome.wustl.edu 36 3 152613672 152613672 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 152613672 152613672 MED12L 3 G G T 48 TTN 7273 genome.wustl.edu 36 2 179180493 179180493 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 179180493 179180493 TTN 2 C C T 19 CACNA1E 777 genome.wustl.edu 36 1 180034140 180034140 + Silent SNP G G T novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 180034140 180034140 CACNA1E 1 G G T 38 RAB7L1 8934 genome.wustl.edu 36 1 204007251 204007251 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 204007251 204007251 RAB7L1 1 G G A 39 CENPF 1063 genome.wustl.edu 36 1 212862097 212862097 + Silent SNP A A G novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 212862097 212862097 CENPF 1 A A G 3 ADAMTSL4 54507 genome.wustl.edu 36 1 148794658 148794658 + Missense_Mutation SNP G G A Unknown TCGA-13-1403-01 TCGA-13-1403-10 G G G A G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 148794658 148794658 ADAMTSL4 1 G G A 38 ENSG00000184624 genome.wustl.edu 36 18 15261452 15261452 + Silent SNP G G A novel Unknown TCGA-13-1403-01 TCGA-13-1403-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 15261452 15261452 ENSG00000184624 18 G G A 33 MORC1 27136 genome.wustl.edu 36 3 110256413 110256413 + Silent SNP G G A Unknown TCGA-13-1403-01 TCGA-13-1403-10 G G G A G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 110256413 110256413 MORC1 3 G G A 38 PDE6C 5146 genome.wustl.edu 36 10 95375354 95375359 + In_Frame_Del DEL AGAAGT AGAAGT - Unknown TCGA-13-1403-01 TCGA-13-1403-10 AGAAGT AGAAGT AGAAGT - AGAAGT AGAAGT Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU In_Frame_Del DEL 95375354 95375359 PDE6C 10 AGAAGT AGAAGT - 11