Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ACAD10	80724	hgsc.bcm.edu	36	12	110677862	110677862	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	110677862	110677862	ACAD10	12	C	C	T	26
ACTR1A	10121	hgsc.bcm.edu	36	10	104230888	104230888	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	104230888	104230888	ACTR1A	10	G	G	C	40
ACVR1C	130399	hgsc.bcm.edu	36	2	158098773	158098773	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	158098773	158098773	ACVR1C	2	C	C	T	19
ANKRD55	79722	hgsc.bcm.edu	36	5	55491464	55491464	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	55491464	55491464	ANKRD55	5	G	G	T	35
ARFGAP1	55738	hgsc.bcm.edu	36	20	61377912	61377912	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	61377912	61377912	ARFGAP1	20	A	A	G	5
ARMCX2	9823	hgsc.bcm.edu	36	X	100798157	100798157	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	100798157	100798157	ARMCX2	23	G	G	C	43
ASTL	431705	hgsc.bcm.edu	36	2	96164819	96164821	+	In_Frame_Del	DEL	GCC	GCC	-	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	GCC	GCC	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Del	DEL	96164819	96164821	ASTL	2	GCC	GCC	-	42
ATP2A3	489	hgsc.bcm.edu	36	17	3778023	3778023	+	Splice_Site_SNP	SNP	C	C	G	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	3778023	3778023	ATP2A3	17	C	C	G	18
BIK	638	hgsc.bcm.edu	36	22	41850035	41850035	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	41850035	41850035	BIK	22	C	C	G	30
C11orf59	55004	hgsc.bcm.edu	36	11	71487536	71487536	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	71487536	71487536	C11orf59	11	A	A	T	10
C14orf4	64207	hgsc.bcm.edu	36	14	76563302	76563302	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	76563302	76563302	C14orf4	14	G	G	A	47
C18orf34	374864	hgsc.bcm.edu	36	18	29101178	29101178	+	Missense_Mutation	SNP	C	C	T	rs58448816	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	29101178	29101178	C18orf34	18	C	C	T	29
C3orf32	51066	hgsc.bcm.edu	36	3	8647591	8647591	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	8647591	8647591	C3orf32	3	C	C	A	32
CASS4	57091	hgsc.bcm.edu	36	20	54445873	54445873	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	54445873	54445873	CASS4	20	G	G	A	33
CDC27	996	hgsc.bcm.edu	36	17	42571161	42571161	+	Missense_Mutation	SNP	A	C	C	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	42571161	42571161	CDC27	17	A	C	C	8
CELA3A	10136	hgsc.bcm.edu	36	1	22206467	22206467	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	22206467	22206467	CELA3A	1	C	C	A	22
CLCN2	1181	hgsc.bcm.edu	36	3	185553623	185553623	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	185553623	185553623	CLCN2	3	T	T	A	59
CNTNAP1	8506	hgsc.bcm.edu	36	17	38090763	38090763	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	38090763	38090763	CNTNAP1	17	G	G	T	42
CPT1B	1375	hgsc.bcm.edu	36	22	49359711	49359711	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	49359711	49359711	CPT1B	22	T	T	-	50
CREG2	200407	hgsc.bcm.edu	36	2	101333854	101333854	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	101333854	101333854	CREG2	2	C	C	T	24
CTSF	8722	hgsc.bcm.edu	36	11	66089927	66089928	+	Frame_Shift_Del	DEL	CT	CT	-	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	CT	CT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	66089927	66089928	CTSF	11	CT	CT	-	24
DLL4	54567	hgsc.bcm.edu	36	15	39016198	39016198	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	39016198	39016198	DLL4	15	T	T	G	62
DNAJC10	54431	hgsc.bcm.edu	36	2	183313317	183313317	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	183313317	183313317	DNAJC10	2	A	A	G	8
DUOX1	53905	hgsc.bcm.edu	36	15	43213718	43213718	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	43213718	43213718	DUOX1	15	C	C	G	23
EGFR	1956	hgsc.bcm.edu	36	7	55216511	55216511	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	55216511	55216511	EGFR	7	C	C	G	22
EVI2B	2124	hgsc.bcm.edu	36	17	26656494	26656494	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	26656494	26656494	EVI2B	17	G	G	A	44
FAM13C	220965	hgsc.bcm.edu	36	10	60782132	60782132	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	60782132	60782132	FAM13C	10	C	C	G	21
FBXO30	84085	hgsc.bcm.edu	36	6	146167274	146167274	+	Missense_Mutation	SNP	C	C	T	rs35721211	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	146167274	146167274	FBXO30	6	C	C	T	19
FCRL1	115350	hgsc.bcm.edu	36	1	156038902	156038902	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	156038902	156038902	FCRL1	1	C	C	T	28
FKBPL	63943	hgsc.bcm.edu	36	6	32204553	32204553	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	32204553	32204553	FKBPL	6	T	T	A	56
FKBPL	63943	hgsc.bcm.edu	36	6	32204817	32204817	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	32204817	32204817	FKBPL	6	A	A	G	11
ARHGEF37	389337	hgsc.bcm.edu	36	5	148991932	148991932	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	148991932	148991932	ARHGEF37	5	G	G	A	41
FLJ43860	389690	hgsc.bcm.edu	36	8	142546735	142546735	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	142546735	142546735	FLJ43860	8	T	T	C	55
FTSJD2	23070	hgsc.bcm.edu	36	6	37537317	37537317	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	37537317	37537317	FTSJD2	6	G	G	C	35
GABRA1	2554	hgsc.bcm.edu	36	5	161232726	161232726	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	161232726	161232726	GABRA1	5	G	G	A	40
GALE	2582	hgsc.bcm.edu	36	1	23997229	23997229	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	23997229	23997229	GALE	1	T	T	C	55
HSF5	124535	hgsc.bcm.edu	36	17	53895186	53895186	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	53895186	53895186	HSF5	17	A	A	T	9
IRS1	3667	hgsc.bcm.edu	36	2	227369507	227369507	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	227369507	227369507	IRS1	2	T	T	C	58
IRS1	3667	hgsc.bcm.edu	36	2	227369510	227369511	+	Frame_Shift_Del	DEL	CC	CC	-	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	CC	CC	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	227369510	227369511	IRS1	2	CC	CC	-	18
IRS1	3667	hgsc.bcm.edu	36	2	227369725	227369725	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	227369725	227369725	IRS1	2	G	G	T	44
IRS1	3667	hgsc.bcm.edu	36	2	227369730	227369730	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	227369730	227369730	IRS1	2	C	C	T	20
JAGN1	84522	hgsc.bcm.edu	36	3	9909740	9909740	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	9909740	9909740	JAGN1	3	G	G	A	40
KANK4	163782	hgsc.bcm.edu	36	1	62512539	62512539	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	62512539	62512539	KANK4	1	C	C	G	17
KCNA1	3736	hgsc.bcm.edu	36	12	4891330	4891330	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	4891330	4891330	KCNA1	12	G	G	A	47
KRT6A	3853	hgsc.bcm.edu	36	12	51168594	51168594	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	51168594	51168594	KRT6A	12	G	G	A	47
KRT9	3857	hgsc.bcm.edu	36	17	36979738	36979738	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	36979738	36979738	KRT9	17	G	G	A	38
LDLR	3949	hgsc.bcm.edu	36	19	11099730	11099730	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	11099730	11099730	LDLR	19	C	C	A	27
MLX	6945	hgsc.bcm.edu	36	17	37974394	37974394	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	37974394	37974394	MLX	17	T	T	-	59
MTL5	9633	hgsc.bcm.edu	36	11	68269133	68269133	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	68269133	68269133	MTL5	11	C	C	G	26
MYO7B	4648	hgsc.bcm.edu	36	2	128062463	128062463	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	128062463	128062463	MYO7B	2	C	C	G	28
NBPF1	55672	hgsc.bcm.edu	36	1	16764843	16764843	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	16764843	16764843	NBPF1	1	T	T	C	55
NGB	58157	hgsc.bcm.edu	36	14	76802680	76802680	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	76802680	76802680	NGB	14	G	G	T	33
NLGN4X	57502	hgsc.bcm.edu	36	X	5831716	5831716	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	5831716	5831716	NLGN4X	23	T	T	C	59
NTRK3	4916	hgsc.bcm.edu	36	15	86377174	86377174	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	86377174	86377174	NTRK3	15	C	C	G	21
OLFML2A	169611	hgsc.bcm.edu	36	9	126612508	126612508	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	126612508	126612508	OLFML2A	9	T	T	C	58
OR11A1	26531	hgsc.bcm.edu	36	6	29502551	29502551	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	29502551	29502551	OR11A1	6	T	T	A	59
OR8B2	26595	hgsc.bcm.edu	36	11	123758339	123758339	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	123758339	123758339	OR8B2	11	G	G	T	45
PCDHGB4	8641	hgsc.bcm.edu	36	5	140750027	140750027	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	140750027	140750027	PCDHGB4	5	C	C	G	21
PDE4C	5143	hgsc.bcm.edu	36	19	18182934	18182934	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	18182934	18182934	PDE4C	19	G	G	A	39
PNMA3	29944	hgsc.bcm.edu	36	X	151977436	151977436	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	151977436	151977436	PNMA3	23	C	C	A	26
POLI	11201	hgsc.bcm.edu	36	18	50051770	50051770	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	50051770	50051770	POLI	18	G	G	C	33
PTN	5764	hgsc.bcm.edu	36	7	136590182	136590182	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	136590182	136590182	PTN	7	C	C	T	17
PTPRS	5802	hgsc.bcm.edu	36	19	5173817	5173817	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	5173817	5173817	PTPRS	19	T	T	C	59
RASAL1	8437	hgsc.bcm.edu	36	12	112029316	112029317	+	Frame_Shift_Ins	INS	-	-	A	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	112029316	112029317	RASAL1	12	-	-	A	21
RBM16	22828	hgsc.bcm.edu	36	6	155195708	155195708	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	155195708	155195708	RBM16	6	G	G	T	33
RBM18	92400	hgsc.bcm.edu	36	9	124053988	124053988	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	124053988	124053988	RBM18	9	G	G	C	48
RC3H1	149041	hgsc.bcm.edu	36	1	172219362	172219362	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	172219362	172219362	RC3H1	1	G	G	C	34
RNF25	64320	hgsc.bcm.edu	36	2	219240930	219240930	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	219240930	219240930	RNF25	2	G	G	C	42
RRAS	6237	hgsc.bcm.edu	36	19	54832155	54832155	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	54832155	54832155	RRAS	19	G	G	C	48
SALL2	6297	hgsc.bcm.edu	36	14	21060819	21060819	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	21060819	21060819	SALL2	14	C	C	T	21
SAMD11	148398	hgsc.bcm.edu	36	1	864328	864329	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	864328	864329	SAMD11	1	-	-	C	34
SCAMP4	113178	hgsc.bcm.edu	36	19	1868795	1868795	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	1868795	1868795	SCAMP4	19	T	T	A	59
SERPINB10	5273	hgsc.bcm.edu	36	18	59738024	59738024	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	59738024	59738024	SERPINB10	18	C	C	T	17
SF3B4	10262	hgsc.bcm.edu	36	1	148162383	148162384	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	148162383	148162384	SF3B4	1	-	-	G	31
SLC17A7	57030	hgsc.bcm.edu	36	19	54627599	54627599	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	54627599	54627599	SLC17A7	19	A	A	-	8
SLC4A4	8671	hgsc.bcm.edu	36	4	72630963	72630963	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	72630963	72630963	SLC4A4	4	G	G	A	43
SNPH	9751	hgsc.bcm.edu	36	20	1233810	1233810	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	1233810	1233810	SNPH	20	G	G	A	36
SNRNP200	23020	hgsc.bcm.edu	36	2	96314752	96314752	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	96314752	96314752	SNRNP200	2	C	C	G	22
SPIN3	169981	hgsc.bcm.edu	36	X	57037387	57037387	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	57037387	57037387	SPIN3	23	A	A	-	9
SPTBN1	6711	hgsc.bcm.edu	36	2	54723706	54723706	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	54723706	54723706	SPTBN1	2	T	T	A	63
STMN3	50861	hgsc.bcm.edu	36	20	61745642	61745642	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	61745642	61745642	STMN3	20	T	T	C	54
STON1-GTF2A1L	286749	hgsc.bcm.edu	36	2	48701926	48701926	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	48701926	48701926	STON1-GTF2A1L	2	G	G	A	40
STRADA	92335	hgsc.bcm.edu	36	17	59135538	59135538	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	59135538	59135538	STRADA	17	G	G	A	43
SVEP1	79987	hgsc.bcm.edu	36	9	112348346	112348346	+	Silent	SNP	T	T	A	rs41305611	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	112348346	112348346	SVEP1	9	T	T	A	51
TEX14	56155	hgsc.bcm.edu	36	17	53993928	53993928	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	53993928	53993928	TEX14	17	G	G	A	47
TOP2A	7153	hgsc.bcm.edu	36	17	35821465	35821465	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Silent	SNP	35821465	35821465	TOP2A	17	G	G	C	34
TOPBP1	11073	hgsc.bcm.edu	36	3	134841559	134841559	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	134841559	134841559	TOPBP1	3	C	C	G	30
TP53	7157	hgsc.bcm.edu	36	17	7519186	7519186	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	7519186	7519186	TP53	17	C	C	A	19
TYROBP	7305	hgsc.bcm.edu	36	19	41089982	41089982	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	41089982	41089982	TYROBP	19	G	G	C	36
VPS13D	55187	hgsc.bcm.edu	36	1	12331990	12331990	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	12331990	12331990	VPS13D	1	A	A	G	16
ZBTB9	221504	hgsc.bcm.edu	36	6	33530955	33530955	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	33530955	33530955	ZBTB9	6	C	C	A	32
ZFHX3	463	hgsc.bcm.edu	36	16	71549101	71549101	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0919-01	TCGA-13-0919-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	71549101	71549101	ZFHX3	16	C	C	G	21