Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context AADACL4 343066 broad.mit.edu 36 1 12648632 12648632 + Missense_Mutation SNP A A C novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 12648632 12648632 AADACL4 1 A A C 9 TRIM63 84676 broad.mit.edu 36 1 26260276 26260276 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 26260276 26260276 TRIM63 1 C C A 26 RPE65 6121 broad.mit.edu 36 1 68677271 68677271 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 68677271 68677271 RPE65 1 G G C 45 PTGFR 5737 broad.mit.edu 36 1 78731443 78731443 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 78731443 78731443 PTGFR 1 C C A 29 ODF2L 57489 broad.mit.edu 36 1 86594815 86594815 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 86594815 86594815 ODF2L 1 G G A 40 ABCA4 24 broad.mit.edu 36 1 94294785 94294785 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 G T G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 94294785 94294785 ABCA4 1 G G T 42 LCE2C 353140 broad.mit.edu 36 1 150915333 150915333 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 150915333 150915333 LCE2C 1 T T G 55 LMNA 4000 broad.mit.edu 36 1 154374944 154374944 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 154374944 154374944 LMNA 1 C C A 18 LBR 3930 broad.mit.edu 36 1 223664643 223664643 + Silent SNP G G C novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 223664643 223664643 LBR 1 G G C 33 CUBN 8029 broad.mit.edu 36 10 17182224 17182224 + Silent SNP A A G novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 17182224 17182224 CUBN 10 A A G 3 MYPN 84665 broad.mit.edu 36 10 69625251 69625251 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 69625251 69625251 MYPN 10 T T G 60 ADAMTS14 140766 broad.mit.edu 36 10 72170895 72170895 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 72170895 72170895 ADAMTS14 10 A A T 6 PACS1 55690 broad.mit.edu 36 11 65594709 65594709 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 65594709 65594709 PACS1 11 C C G 30 SERPINH1 871 broad.mit.edu 36 11 74955282 74955282 + Silent SNP C C G novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 74955282 74955282 SERPINH1 11 C C G 31 FAT3 120114 broad.mit.edu 36 11 91726643 91726643 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 91726643 91726643 FAT3 11 G G A 37 WNK1 65125 broad.mit.edu 36 12 809542 809542 + Silent SNP C C T novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 809542 809542 WNK1 12 C C T 20 H2AFJ 55766 broad.mit.edu 36 12 14818950 14818950 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 14818950 14818950 H2AFJ 12 G G C 36 STK38L 23012 broad.mit.edu 36 12 27362215 27362215 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 C A C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 27362215 27362215 STK38L 12 C C A 32 CEP290 80184 broad.mit.edu 36 12 86989785 86989785 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 86989785 86989785 CEP290 12 G G C 42 MYH7 4625 broad.mit.edu 36 14 22971763 22971763 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 22971763 22971763 MYH7 14 G G A 39 DLK1 8788 broad.mit.edu 36 14 100270974 100270974 + Silent SNP C C T novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 100270974 100270974 DLK1 14 C C T 19 THBS1 7057 broad.mit.edu 36 15 37663834 37663834 + Silent SNP T T A novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 T A T T Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 37663834 37663834 THBS1 15 T T A 54 TTBK2 146057 broad.mit.edu 36 15 40832482 40832482 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 G C G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 40832482 40832482 TTBK2 15 G G C 45 HAPLN3 145864 broad.mit.edu 36 15 87223476 87223476 + Silent SNP G G A novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 87223476 87223476 HAPLN3 15 G G A 40 IL4R 3566 broad.mit.edu 36 16 27281903 27281903 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 27281903 27281903 IL4R 16 G G A 41 TUBB3 10381 broad.mit.edu 36 16 88527464 88527464 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 88527464 88527464 TUBB3 16 T T C 62 YWHAE 7531 broad.mit.edu 36 17 1250112 1250112 + Nonsense_Mutation SNP C C A novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 1250112 1250112 YWHAE 17 C C A 31 TP53 7157 broad.mit.edu 36 17 7517830 7517830 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7517830 7517830 TP53 17 G G C 35 TNS4 84951 broad.mit.edu 36 17 35889572 35889572 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 35889572 35889572 TNS4 17 C C T 30 WFIKKN2 124857 broad.mit.edu 36 17 46272336 46272336 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 46272336 46272336 WFIKKN2 17 C C T 24 COX11 1353 broad.mit.edu 36 17 50400990 50400990 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 50400990 50400990 COX11 17 C C A 19 TTYH2 94015 broad.mit.edu 36 17 69758052 69758052 + Silent SNP C C T novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 69758052 69758052 TTYH2 17 C C T 18 KIAA0802 23255 broad.mit.edu 36 18 8815314 8815314 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 8815314 8815314 KIAA0802 18 C C T 30 LAMA3 3909 broad.mit.edu 36 18 19673834 19673834 + Silent SNP C C G novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 C G C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 19673834 19673834 LAMA3 18 C C G 22 MUC16 94025 broad.mit.edu 36 19 8944768 8944768 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 C T C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 8944768 8944768 MUC16 19 C C T 32 ILF3 3609 broad.mit.edu 36 19 10654341 10654341 + Silent SNP C C T novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 C T C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 10654341 10654341 ILF3 19 C C T 21 GATAD2A 54815 broad.mit.edu 36 19 19473163 19473163 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 19473163 19473163 GATAD2A 19 G G C 43 PRODH2 58510 broad.mit.edu 36 19 40994993 40994993 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 40994993 40994993 PRODH2 19 G G T 44 TEX101 83639 broad.mit.edu 36 19 48612233 48612233 + Silent SNP A A T novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 48612233 48612233 TEX101 19 A A T 7 ZNF610 162963 broad.mit.edu 36 19 57561365 57561365 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 57561365 57561365 ZNF610 19 G G A 48 ZNF552 79818 broad.mit.edu 36 19 63011287 63011287 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 63011287 63011287 ZNF552 19 T T C 62 ZSCAN1 284312 broad.mit.edu 36 19 63255711 63255711 + Silent SNP A A T novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 63255711 63255711 ZSCAN1 19 A A T 6 ETAA1 54465 broad.mit.edu 36 2 67485207 67485207 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 67485207 67485207 ETAA1 2 G G C 36 CNGA3 1261 broad.mit.edu 36 2 98380026 98380026 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 98380026 98380026 CNGA3 2 C C T 18 LYG2 254773 broad.mit.edu 36 2 99228301 99228301 + Silent SNP A A C novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 99228301 99228301 LYG2 2 A A C 3 TANC1 85461 broad.mit.edu 36 2 159794435 159794435 + Nonsense_Mutation SNP A A T novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 159794435 159794435 TANC1 2 A A T 5 DYTN 391475 broad.mit.edu 36 2 207224851 207224851 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 207224851 207224851 DYTN 2 G G A 34 SLC4A11 83959 broad.mit.edu 36 20 3163474 3163474 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 3163474 3163474 SLC4A11 20 A A T 9 WFDC5 149708 broad.mit.edu 36 20 43172775 43172775 + Silent SNP G G A novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 43172775 43172775 WFDC5 20 G G A 44 STAU1 6780 broad.mit.edu 36 20 47169963 47169963 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 47169963 47169963 STAU1 20 G G A 38 GNAS 2778 broad.mit.edu 36 20 56913889 56913889 + Nonsense_Mutation SNP C C G novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 C G C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Nonsense_Mutation SNP 56913889 56913889 GNAS 20 C C G 19 GGT5 2687 broad.mit.edu 36 22 22952670 22952670 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 22952670 22952670 GGT5 22 C C T 17 WNT7A 7476 broad.mit.edu 36 3 13835897 13835897 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 13835897 13835897 WNT7A 3 C C G 30 CAPN7 23473 broad.mit.edu 36 3 15257122 15257122 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 15257122 15257122 CAPN7 3 G G C 33 DNAH1 25981 broad.mit.edu 36 3 52405674 52405674 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 52405674 52405674 DNAH1 3 G G A 44 HSPBAP1 79663 broad.mit.edu 36 3 123970328 123970328 + Silent SNP T T A novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 123970328 123970328 HSPBAP1 3 T T A 51 C3orf59 151963 broad.mit.edu 36 3 193999044 193999044 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 193999044 193999044 C3orf59 3 G G C 44 IL7R 3575 broad.mit.edu 36 5 35896794 35896794 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 A T A A Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 35896794 35896794 IL7R 5 A A T 10 ERBB2IP 55914 broad.mit.edu 36 5 65352971 65352971 + Splice_Site_SNP SNP T T A novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 65352971 65352971 ERBB2IP 5 T T A 57 PJA2 9867 broad.mit.edu 36 5 108745197 108745197 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 108745197 108745197 PJA2 5 T T G 60 PCDHB5 26167 broad.mit.edu 36 5 140495805 140495805 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 G A G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 140495805 140495805 PCDHB5 5 G G A 39 HTR4 3360 broad.mit.edu 36 5 147869419 147869419 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 147869419 147869419 HTR4 5 G G C 35 BAT2 7916 broad.mit.edu 36 6 31711457 31711457 + Silent SNP C C T novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 C T C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 31711457 31711457 BAT2 6 C C T 26 UHRF1BP1 54887 broad.mit.edu 36 6 34933527 34933527 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 34933527 34933527 UHRF1BP1 6 T T C 51 ASCC3 10973 broad.mit.edu 36 6 101354981 101354981 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 G A G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 101354981 101354981 ASCC3 6 G G A 42 KIAA1919 91749 broad.mit.edu 36 6 111691771 111691771 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 111691771 111691771 KIAA1919 6 T T A 64 FSCN1 6624 broad.mit.edu 36 7 5610090 5610090 + Silent SNP C C T novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 5610090 5610090 FSCN1 7 C C T 29 DLX6 1750 broad.mit.edu 36 7 96474989 96474989 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 96474989 96474989 DLX6 7 G G T 35 TRPV5 56302 broad.mit.edu 36 7 142332804 142332804 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 C A C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 142332804 142332804 TRPV5 7 C C A 19 WDR60 55112 broad.mit.edu 36 7 158365361 158365361 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 158365361 158365361 WDR60 7 T T G 64 ADAMTSL1 92949 broad.mit.edu 36 9 18766831 18766831 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 18766831 18766831 ADAMTSL1 9 G G T 35 COL5A1 1289 broad.mit.edu 36 9 136799012 136799012 + Silent SNP A A T novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 A T A A Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 136799012 136799012 COL5A1 9 A A T 7 SMS 6611 broad.mit.edu 36 X 21906034 21906034 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 A T A A Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 21906034 21906034 SMS 23 A A T 8 POLA1 5422 broad.mit.edu 36 X 24737953 24737953 + Silent SNP A A G novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 A G A A Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 24737953 24737953 POLA1 23 A A G 3 CLCN5 1184 broad.mit.edu 36 X 49743532 49743532 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 49743532 49743532 CLCN5 23 G G T 46 FGD1 2245 broad.mit.edu 36 X 54498936 54498936 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 54498936 54498936 FGD1 23 C C T 31 FAM123B 139285 broad.mit.edu 36 X 63326799 63326799 + Silent SNP G G C novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 G C G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 63326799 63326799 FAM123B 23 G G C 42 ACRC 93953 broad.mit.edu 36 X 70745675 70745675 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 70745675 70745675 ACRC 23 T T A 50 PAK3 5063 broad.mit.edu 36 X 110324209 110324209 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 G T G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 110324209 110324209 PAK3 23 G G T 43 IGSF1 3547 broad.mit.edu 36 X 130244862 130244862 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 130244862 130244862 IGSF1 23 T T C 62 NBPF10 100132406 broad.mit.edu 36 1 144038903 144038907 + Frame_Shift_Del DEL TGAAT - TGAAT novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 144038903 144038907 NBPF10 1 TGAAT - TGAAT 55 GPR37L1 9283 broad.mit.edu 36 1 200363835 200363843 + In_Frame_Del DEL CAGTCACCT - CAGTCACCT novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad In_Frame_Del DEL 200363835 200363843 GPR37L1 1 CAGTCACCT - CAGTCACCT 17 PRKCQ 5588 broad.mit.edu 36 10 6565544 6565562 + Frame_Shift_Del DEL GACTCCCAGGAAATGCCCT - GACTCCCAGGAAATGCCCT novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 6565544 6565562 PRKCQ 10 GACTCCCAGGAAATGCCCT - GACTCCCAGGAAATGCCCT 33 OR6X1 390260 broad.mit.edu 36 11 123130340 123130340 + Frame_Shift_Del DEL A - - novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 123130340 123130340 OR6X1 11 A - - 15 FOXJ2 55810 broad.mit.edu 36 12 8083874 8083881 + Frame_Shift_Del DEL CAGTGCAC - CAGTGCAC novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 8083874 8083881 FOXJ2 12 CAGTGCAC - CAGTGCAC 25 KIAA1409 57578 broad.mit.edu 36 14 93116303 93116353 + In_Frame_Del DEL ACATTATTTCTATTATAAACAATGTCTTCCAAGCCCCCTGGGGGGGATCCC - ACATTATTTCTATTATAAACAATGTCTTCCAAGCCCCCTGGGGGGGATCCC novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad In_Frame_Del DEL 93116303 93116353 KIAA1409 14 ACATTATTTCTATTATAAACAATGTCTTCCAAGCCCCCTGGGGGGGATCCC - ACATTATTTCTATTATAAACAATGTCTTCCAAGCCCCCTGGGGGGGATCCC 10 MUC16 94025 broad.mit.edu 36 19 8949834 8949848 + In_Frame_Del DEL GCAGAGAGAGAAGTG - GCAGAGAGAGAAGTG novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 - GCAGAGAGAGAAGTG GCAGAGAGAGAAGTG GCAGAGAGAGAAGTG Unknown Valid Somatic Phase_I Capture Illumina GAIIx Broad In_Frame_Del DEL 8949834 8949848 MUC16 19 GCAGAGAGAGAAGTG - GCAGAGAGAGAAGTG 34 ASNA1 439 broad.mit.edu 36 19 12717512 12717523 + In_Frame_Del DEL TGGAGCGGGGCC - TGGAGCGGGGCC novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad In_Frame_Del DEL 12717512 12717523 ASNA1 19 TGGAGCGGGGCC - TGGAGCGGGGCC 59 MYO3B 140469 broad.mit.edu 36 2 170948469 170948498 + In_Frame_Del DEL TCCAGACTTTATCATGGGGTGAAACGCGCC - TCCAGACTTTATCATGGGGTGAAACGCGCC novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad In_Frame_Del DEL 170948469 170948498 MYO3B 2 TCCAGACTTTATCATGGGGTGAAACGCGCC - TCCAGACTTTATCATGGGGTGAAACGCGCC 62 DHX30 22907 broad.mit.edu 36 3 47866108 47866127 + Splice_Site_Del DEL GCCCTGTGTTCCCTAGGGAG - GCCCTGTGTTCCCTAGGGAG novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Splice_Site_Del DEL 47866108 47866127 DHX30 3 GCCCTGTGTTCCCTAGGGAG - GCCCTGTGTTCCCTAGGGAG 34 SYNGAP1 8831 broad.mit.edu 36 6 33519653 33519661 + In_Frame_Del DEL GGGGGCAGC - GGGGGCAGC novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad In_Frame_Del DEL 33519653 33519661 SYNGAP1 6 GGGGGCAGC - GGGGGCAGC 47 DCAF4L2 138009 broad.mit.edu 36 8 88955315 88955320 + Nonsense_Mutation DEL TTTCGT - TTTCGT novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Nonsense_Mutation DEL 88955315 88955320 DCAF4L2 8 TTTCGT - TTTCGT 52 ARMCX2 9823 broad.mit.edu 36 X 100798262 100798284 + Frame_Shift_Del DEL GGCTGCAGCAGCTGCTGCAGCCC - GGCTGCAGCAGCTGCTGCAGCCC novel Unknown TCGA-13-0913-01 TCGA-13-0913-10 - GGCTGCAGCAGCTGCTGCAGCCC GGCTGCAGCAGCTGCTGCAGCCC GGCTGCAGCAGCTGCTGCAGCCC Unknown Valid Somatic Phase_I Capture Illumina GAIIx Broad Frame_Shift_Del DEL 100798262 100798284 ARMCX2 23 GGCTGCAGCAGCTGCTGCAGCCC - GGCTGCAGCAGCTGCTGCAGCCC 35