Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ADAMTS4	9507	hgsc.bcm.edu	36	1	159427713	159427713	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	159427713	159427713	ADAMTS4	1	C	C	A	20
ANKAR	150709	hgsc.bcm.edu	36	2	190316408	190316408	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	190316408	190316408	ANKAR	2	C	C	G	29
ANKRD55	79722	hgsc.bcm.edu	36	5	55491464	55491464	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	55491464	55491464	ANKRD55	5	G	G	T	35
APC	324	hgsc.bcm.edu	36	5	112201745	112201745	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	112201745	112201745	APC	5	T	T	C	63
BAZ1A	11177	hgsc.bcm.edu	36	14	34333744	34333744	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	34333744	34333744	BAZ1A	14	A	A	G	1
BCAT2	587	hgsc.bcm.edu	36	19	54001784	54001784	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	54001784	54001784	BCAT2	19	A	A	-	7
BRD8	10902	hgsc.bcm.edu	36	5	137529604	137529604	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	137529604	137529604	BRD8	5	T	T	A	51
C10orf12	26148	hgsc.bcm.edu	36	10	98732714	98732714	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	98732714	98732714	C10orf12	10	C	C	A	29
FAM188A	80013	hgsc.bcm.edu	36	10	15916574	15916574	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	15916574	15916574	FAM188A	10	C	C	T	29
C9orf171	389799	hgsc.bcm.edu	36	9	134364658	134364658	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	134364658	134364658	C9orf171	9	G	G	A	38
CASP8AP2	9994	hgsc.bcm.edu	36	6	90628743	90628743	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	90628743	90628743	CASP8AP2	6	G	G	A	47
CD163	9332	hgsc.bcm.edu	36	12	7527277	7527277	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	7527277	7527277	CD163	12	C	C	T	26
CLCN4	1183	hgsc.bcm.edu	36	X	10126092	10126092	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	10126092	10126092	CLCN4	23	C	C	A	25
CLP1	10978	hgsc.bcm.edu	36	11	57183719	57183719	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	57183719	57183719	CLP1	11	T	T	A	64
CNTNAP4	85445	hgsc.bcm.edu	36	16	75070918	75070918	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	75070918	75070918	CNTNAP4	16	C	C	T	32
COPB1	1315	hgsc.bcm.edu	36	11	14455092	14455092	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	14455092	14455092	COPB1	11	G	G	C	47
CPA5	93979	hgsc.bcm.edu	36	7	129777070	129777070	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	129777070	129777070	CPA5	7	C	C	T	22
DAXX	1616	hgsc.bcm.edu	36	6	33395474	33395474	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	33395474	33395474	DAXX	6	G	G	T	45
DDO	8528	hgsc.bcm.edu	36	6	110820934	110820934	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	110820934	110820934	DDO	6	G	G	-	33
DDO	8528	hgsc.bcm.edu	36	6	110821236	110821236	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	110821236	110821236	DDO	6	A	A	C	16
DDOST	1650	hgsc.bcm.edu	36	1	20853317	20853317	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	20853317	20853317	DDOST	1	C	C	T	27
DNMT3A	1788	hgsc.bcm.edu	36	2	25318004	25318004	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	25318004	25318004	DNMT3A	2	C	C	G	23
DPY19L3	147991	hgsc.bcm.edu	36	19	37637701	37637701	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	37637701	37637701	DPY19L3	19	G	G	A	41
MECOM	2122	hgsc.bcm.edu	36	3	170302618	170302618	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	170302618	170302618	MECOM	3	T	T	C	49
FAM163A	148753	hgsc.bcm.edu	36	1	178049561	178049561	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	178049561	178049561	FAM163A	1	A	A	G	2
FCHSD2	9873	hgsc.bcm.edu	36	11	72389705	72389705	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	72389705	72389705	FCHSD2	11	A	A	-	13
FRMD4B	23150	hgsc.bcm.edu	36	3	69350185	69350185	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	69350185	69350185	FRMD4B	3	C	C	A	18
GALNT14	79623	hgsc.bcm.edu	36	2	31008495	31008495	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	31008495	31008495	GALNT14	2	A	A	C	10
GRB2	2885	hgsc.bcm.edu	36	17	70828143	70828143	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	70828143	70828143	GRB2	17	G	G	A	45
ITPR2	3709	hgsc.bcm.edu	36	12	26726809	26726809	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	26726809	26726809	ITPR2	12	T	T	C	51
JARID2	3720	hgsc.bcm.edu	36	6	15605105	15605105	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	15605105	15605105	JARID2	6	T	T	G	50
JARID2	3720	hgsc.bcm.edu	36	6	15605109	15605109	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	15605109	15605109	JARID2	6	C	C	A	23
KALRN	8997	hgsc.bcm.edu	36	3	125692410	125692410	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	125692410	125692410	KALRN	3	A	A	G	9
KCMF1	56888	hgsc.bcm.edu	36	2	85133899	85133899	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	85133899	85133899	KCMF1	2	A	A	-	8
KCNC4	3749	hgsc.bcm.edu	36	1	110567135	110567135	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	110567135	110567135	KCNC4	1	C	C	A	29
KHNYN	23351	hgsc.bcm.edu	36	14	23976081	23976081	+	Splice_Site_SNP	SNP	G	G	T	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	23976081	23976081	KHNYN	14	G	G	T	35
FAM190A	401145	hgsc.bcm.edu	36	4	91540245	91540245	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	91540245	91540245	FAM190A	4	T	T	A	51
KLHL22	84861	hgsc.bcm.edu	36	22	19130918	19130918	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	19130918	19130918	KLHL22	22	T	T	C	59
KLHL29	114818	hgsc.bcm.edu	36	2	23779600	23779601	+	Frame_Shift_Ins	INS	-	-	T	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	23779600	23779601	KLHL29	2	-	-	T	32
KLK7	5650	hgsc.bcm.edu	36	19	56172733	56172733	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	56172733	56172733	KLK7	19	G	G	T	46
LAMA3	3909	hgsc.bcm.edu	36	18	19581946	19581946	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	19581946	19581946	LAMA3	18	T	T	G	54
LAMA4	3910	hgsc.bcm.edu	36	6	112568718	112568718	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	112568718	112568718	LAMA4	6	A	A	G	11
LCA5L	150082	hgsc.bcm.edu	36	21	39714593	39714593	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	39714593	39714593	LCA5L	21	T	T	C	55
MAGEL2	54551	hgsc.bcm.edu	36	15	21440814	21440814	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	21440814	21440814	MAGEL2	15	C	C	T	29
MDGA2	161357	hgsc.bcm.edu	36	14	46600366	46600366	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	46600366	46600366	MDGA2	14	C	C	T	23
MED29	55588	hgsc.bcm.edu	36	19	44579948	44579948	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	44579948	44579948	MED29	19	T	T	C	51
MTCH2	23788	hgsc.bcm.edu	36	11	47616863	47616863	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	47616863	47616863	MTCH2	11	T	T	C	54
MYO1A	4640	hgsc.bcm.edu	36	12	55717626	55717626	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	55717626	55717626	MYO1A	12	T	T	A	63
NCOA1	8648	hgsc.bcm.edu	36	2	24781576	24781576	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	24781576	24781576	NCOA1	2	C	C	T	24
PBRM1	55193	hgsc.bcm.edu	36	3	52667321	52667321	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	52667321	52667321	PBRM1	3	T	T	G	53
PCDHAC1	56135	hgsc.bcm.edu	36	5	140286718	140286718	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	140286718	140286718	PCDHAC1	5	G	G	A	39
PCGF1	84759	hgsc.bcm.edu	36	2	74585824	74585824	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	74585824	74585824	PCGF1	2	G	G	A	47
PDE4A	5141	hgsc.bcm.edu	36	19	10433644	10433644	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	10433644	10433644	PDE4A	19	T	T	A	54
PDIA4	9601	hgsc.bcm.edu	36	7	148347113	148347113	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	148347113	148347113	PDIA4	7	C	C	T	17
PHACTR1	221692	hgsc.bcm.edu	36	6	13336184	13336184	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	13336184	13336184	PHACTR1	6	G	G	C	45
PIGT	51604	hgsc.bcm.edu	36	20	43487817	43487817	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	43487817	43487817	PIGT	20	A	A	C	7
PKIA	5569	hgsc.bcm.edu	36	8	79673225	79673225	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	79673225	79673225	PKIA	8	A	A	C	7
PPOX	5498	hgsc.bcm.edu	36	1	159404504	159404504	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	159404504	159404504	PPOX	1	C	C	T	20
PSD3	23362	hgsc.bcm.edu	36	8	18474377	18474377	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	18474377	18474377	PSD3	8	C	C	T	23
QRICH1	54870	hgsc.bcm.edu	36	3	49070143	49070143	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	49070143	49070143	QRICH1	3	T	T	A	63
SIK3	23387	hgsc.bcm.edu	36	11	116235319	116235319	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	116235319	116235319	SIK3	11	G	G	A	38
QSOX2	169714	hgsc.bcm.edu	36	9	138240666	138240666	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	138240666	138240666	QSOX2	9	A	A	C	10
RBM12B	389677	hgsc.bcm.edu	36	8	94815805	94815805	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	94815805	94815805	RBM12B	8	T	T	G	59
RRAD	6236	hgsc.bcm.edu	36	16	65513564	65513564	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	65513564	65513564	RRAD	16	G	G	T	33
RTN2	6253	hgsc.bcm.edu	36	19	50683996	50683996	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	50683996	50683996	RTN2	19	T	T	C	59
RUSC1	23623	hgsc.bcm.edu	36	1	153562021	153562021	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	153562021	153562021	RUSC1	1	T	T	G	58
SGSM3	27352	hgsc.bcm.edu	36	22	39131600	39131600	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	39131600	39131600	SGSM3	22	T	T	C	59
SH3D19	152503	hgsc.bcm.edu	36	4	152306222	152306222	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	152306222	152306222	SH3D19	4	A	A	C	7
SLC1A6	6511	hgsc.bcm.edu	36	19	14936168	14936168	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	14936168	14936168	SLC1A6	19	A	A	C	8
SMC1B	27127	hgsc.bcm.edu	36	22	44176884	44176884	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	44176884	44176884	SMC1B	22	C	C	G	32
SMG6	23293	hgsc.bcm.edu	36	17	2149950	2149950	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	2149950	2149950	SMG6	17	G	G	A	48
SND1	27044	hgsc.bcm.edu	36	7	127514303	127514303	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	127514303	127514303	SND1	7	G	G	C	39
STARD8	9754	hgsc.bcm.edu	36	X	67854613	67854613	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	67854613	67854613	STARD8	23	G	G	A	45
TEX14	56155	hgsc.bcm.edu	36	17	54054028	54054028	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	54054028	54054028	TEX14	17	C	C	T	17
TGM2	7052	hgsc.bcm.edu	36	20	36194231	36194231	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	36194231	36194231	TGM2	20	G	G	C	37
THSD1	55901	hgsc.bcm.edu	36	13	51869792	51869792	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	51869792	51869792	THSD1	13	A	A	T	10
TIPARP	25976	hgsc.bcm.edu	36	3	157878713	157878724	+	In_Frame_Del	DEL	TAGACAAAGTCA	TAGACAAAGTCA	-	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	TAGACAAAGTCA	TAGACAAAGTCA	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Del	DEL	157878713	157878724	TIPARP	3	TAGACAAAGTCA	TAGACAAAGTCA	-	61
TP53	7157	hgsc.bcm.edu	36	17	7520042	7520042	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	7520042	7520042	TP53	17	A	A	-	5
TRAF1	7185	hgsc.bcm.edu	36	9	122713525	122713525	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	122713525	122713525	TRAF1	9	A	A	C	3
TRIM31	11074	hgsc.bcm.edu	36	6	30188549	30188549	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	30188549	30188549	TRIM31	6	G	G	T	46
TRIM71	131405	hgsc.bcm.edu	36	3	32907173	32907173	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	32907173	32907173	TRIM71	3	C	C	T	27
TROVE2	6738	hgsc.bcm.edu	36	1	191317226	191317226	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	191317226	191317226	TROVE2	1	T	T	C	51
XPO7	23039	hgsc.bcm.edu	36	8	21912553	21912553	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	21912553	21912553	XPO7	8	C	C	T	31
ZFP57	346171	hgsc.bcm.edu	36	6	29748688	29748688	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	29748688	29748688	ZFP57	6	A	A	G	13
ZNF323	64288	hgsc.bcm.edu	36	6	28402611	28402611	+	Splice_Site_SNP	SNP	C	C	T	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	28402611	28402611	ZNF323	6	C	C	T	32
ZNF592	9640	hgsc.bcm.edu	36	15	83143379	83143379	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0793-01	TCGA-13-0793-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	83143379	83143379	ZNF592	15	C	C	A	18