Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context RHBDF1 64285 genome.wustl.edu 36 16 49279 49279 + Silent SNP G G A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 49279 49279 RHBDF1 16 G G A 44 POLRMT 5442 genome.wustl.edu 36 19 574499 574499 + Silent SNP C C A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 574499 574499 POLRMT 19 C C A 17 WNK1 65125 genome.wustl.edu 36 12 859235 859235 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 859235 859235 WNK1 12 C C T 20 NOC2L 26155 genome.wustl.edu 36 1 871755 871755 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 871755 871755 NOC2L 1 T T G 63 TERT 7015 genome.wustl.edu 36 5 1333401 1333401 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 1333401 1333401 TERT 5 G G T 46 ERC1 23085 genome.wustl.edu 36 12 1424012 1424012 + Silent SNP T T G novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 1424012 1424012 ERC1 12 T T G 63 CACNA1C 775 genome.wustl.edu 36 12 2094813 2094813 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 2094813 2094813 CACNA1C 12 C C A 27 MLST8 64223 genome.wustl.edu 36 16 2198833 2198833 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 2198833 2198833 MLST8 16 A A G 7 THOP1 7064 genome.wustl.edu 36 19 2750744 2750744 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 2750744 2750744 THOP1 19 C C A 24 CLUAP1 23059 genome.wustl.edu 36 16 3513216 3513216 + Silent SNP C C T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 3513216 3513216 CLUAP1 16 C C T 17 ZZEF1 23140 genome.wustl.edu 36 17 3867594 3867594 + Silent SNP G C C novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G C C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 3867594 3867594 ZZEF1 17 G C C 33 PSMB6 5694 genome.wustl.edu 36 17 4647940 4647940 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 4647940 4647940 PSMB6 17 A A G 9 KIAA2026 158358 genome.wustl.edu 36 9 5959314 5959314 + Missense_Mutation SNP G C C novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G C C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 5959314 5959314 KIAA2026 9 G C C 34 TBC1D14 57533 genome.wustl.edu 36 4 7046811 7046811 + Splice_Site_SNP SNP G G C novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 7046811 7046811 TBC1D14 4 G G C 35 DSP 1832 genome.wustl.edu 36 6 7504456 7504456 + Splice_Site_SNP SNP A A G novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 7504456 7504456 DSP 6 A A G 7 FBN3 84467 genome.wustl.edu 36 19 8107405 8107405 + Silent SNP G G A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 8107405 8107405 FBN3 19 G G A 43 CLEC4D 338339 genome.wustl.edu 36 12 8564164 8564165 + Missense DNP TG TG GT novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 TG TG TG GT TG TG Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense DNP 8564164 8564165 CLEC4D 12 TG TG GT 59 CPZ 8532 genome.wustl.edu 36 4 8659894 8659894 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 8659894 8659894 CPZ 4 G G T 44 TMED1 11018 genome.wustl.edu 36 19 10806964 10806964 + Silent SNP G G T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 10806964 10806964 TMED1 19 G G T 45 SCIN 85477 genome.wustl.edu 36 7 12631265 12631265 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 12631265 12631265 SCIN 7 G G A 42 HOOK2 29911 genome.wustl.edu 36 19 12742827 12742827 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 12742827 12742827 HOOK2 19 G G A 38 CACNA1A 773 genome.wustl.edu 36 19 13258396 13258396 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C G C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 13258396 13258396 CACNA1A 19 C C G 32 MGP 4256 genome.wustl.edu 36 12 14926380 14926380 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 14926380 14926380 MGP 12 G G A 42 CELA2B 51032 genome.wustl.edu 36 1 15680218 15680218 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 15680218 15680218 CELA2B 1 C C G 17 ENSG00000215003 genome.wustl.edu 36 16 15933071 15933071 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 15933071 15933071 ENSG00000215003 16 A A G 11 PTER 9317 genome.wustl.edu 36 10 16566430 16566430 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 16566430 16566430 PTER 10 T T C 56 UPF1 5976 genome.wustl.edu 36 19 18824027 18824027 + Silent SNP C C T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 18824027 18824027 UPF1 19 C C T 19 ENSG00000161149 genome.wustl.edu 36 22 19693539 19693539 + Silent SNP C C T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 19693539 19693539 ENSG00000161149 22 C C T 31 KCNIP4 80333 genome.wustl.edu 36 4 20493348 20493348 + Silent SNP C C T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 20493348 20493348 KCNIP4 4 C C T 19 IGLV10-54 genome.wustl.edu 36 22 20899407 20899407 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 20899407 20899407 IGLV10-54 22 G G T 45 CHD8 57680 genome.wustl.edu 36 14 20943240 20943240 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 20943240 20943240 CHD8 14 C C T 27 NLK 51701 genome.wustl.edu 36 17 23512371 23512371 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 23512371 23512371 NLK 17 C C A 18 ARHGAP21 57584 genome.wustl.edu 36 10 24948443 24948443 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 24948443 24948443 ARHGAP21 10 G G T 39 SEPN1 57190 genome.wustl.edu 36 1 26007750 26007750 + Silent SNP T T A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 T T T A T T Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 26007750 26007750 SEPN1 1 T T A 62 ARID1A 8289 genome.wustl.edu 36 1 26974783 26974783 + Nonsense_Mutation SNP C C T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 26974783 26974783 ARID1A 1 C C T 29 SNX17 9784 genome.wustl.edu 36 2 27451898 27451898 + Silent SNP C C T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 27451898 27451898 SNX17 2 C C T 28 PTCHD3 374308 genome.wustl.edu 36 10 27727657 27727657 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 27727657 27727657 PTCHD3 10 C C G 24 EOMES 8320 genome.wustl.edu 36 3 27733789 27733789 + Nonsense_Mutation SNP C C A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 27733789 27733789 EOMES 3 C C A 30 KIF3B 9371 genome.wustl.edu 36 20 30368004 30368004 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 30368004 30368004 KIF3B 20 G G C 33 ZNF785 146540 genome.wustl.edu 36 16 30501764 30501764 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 30501764 30501764 ZNF785 16 G G A 40 RYR3 6263 genome.wustl.edu 36 15 31837038 31837038 + Missense_Mutation SNP C A A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C A A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 31837038 31837038 RYR3 15 C A A 22 ZNF860 344787 genome.wustl.edu 36 3 32005808 32005808 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 32005808 32005808 ZNF860 3 C C T 27 VPS52 6293 genome.wustl.edu 36 6 33339806 33339806 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 33339806 33339806 VPS52 6 G G C 48 FAM98A 25940 genome.wustl.edu 36 2 33670758 33670758 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 33670758 33670758 FAM98A 2 A A T 3 SLC5A3 6526 genome.wustl.edu 36 21 34389965 34389965 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 34389965 34389965 SLC5A3 21 A A G 16 SPDEF 25803 genome.wustl.edu 36 6 34620202 34620202 + Silent SNP G G A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 34620202 34620202 SPDEF 6 G G A 38 UHRF1BP1 54887 genome.wustl.edu 36 6 34939818 34939818 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 34939818 34939818 UHRF1BP1 6 C C A 20 UNC13B 10497 genome.wustl.edu 36 9 35393794 35393794 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 35393794 35393794 UNC13B 9 G G A 40 PAMR1 25891 genome.wustl.edu 36 11 35410599 35410599 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 35410599 35410599 PAMR1 11 G G A 40 ZNF536 9745 genome.wustl.edu 36 19 35626475 35626475 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 35626475 35626475 ZNF536 19 C C G 22 BPI 671 genome.wustl.edu 36 20 36385777 36385777 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 36385777 36385777 BPI 20 T T C 55 DCLK3 85443 genome.wustl.edu 36 3 36731996 36731996 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 36731996 36731996 DCLK3 3 G G A 39 ZBTB5 9925 genome.wustl.edu 36 9 37432187 37432187 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 37432187 37432187 ZBTB5 9 G G T 48 PLCB2 5330 genome.wustl.edu 36 15 38382800 38382800 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 38382800 38382800 PLCB2 15 T T G 56 LRRK2 120892 genome.wustl.edu 36 12 39031692 39031692 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 39031692 39031692 LRRK2 12 G G T 44 FFAR3 2865 genome.wustl.edu 36 19 40541728 40541728 + Silent SNP C C T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 40541728 40541728 FFAR3 19 C C T 18 DDX3X 1654 genome.wustl.edu 36 X 41091083 41091083 + Missense_Mutation SNP G C C novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G C C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 41091083 41091083 DDX3X 23 G C C 35 DDX3X 1654 genome.wustl.edu 36 X 41091091 41091091 + Missense_Mutation SNP A A C novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 41091091 41091091 DDX3X 23 A A C 1 KIAA0564 23078 genome.wustl.edu 36 13 41147411 41147411 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 41147411 41147411 KIAA0564 13 G G C 33 ZNF568 374900 genome.wustl.edu 36 19 42132392 42132392 + Nonsense_Mutation SNP C C A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 42132392 42132392 ZNF568 19 C C A 29 TMPRSS3 64699 genome.wustl.edu 36 21 42669753 42669753 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 42669753 42669753 TMPRSS3 21 G G T 38 TTC17 55761 genome.wustl.edu 36 11 43422283 43422283 + Nonsense_Mutation SNP C C G novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 43422283 43422283 TTC17 11 C C G 18 CAMK2B 816 genome.wustl.edu 36 7 44247903 44247903 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 44247903 44247903 CAMK2B 7 C C T 27 PAK4 10298 genome.wustl.edu 36 19 44360981 44360981 + Silent SNP G G A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G A G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 44360981 44360981 PAK4 19 G G A 46 PTTG1IP 754 genome.wustl.edu 36 21 45100669 45100669 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 45100669 45100669 PTTG1IP 21 C C G 23 FAM35B genome.wustl.edu 36 10 46347869 46347869 + Missense_Mutation SNP A A C novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 46347869 46347869 FAM35B 10 A A C 7 PSMC3 5702 genome.wustl.edu 36 11 47402214 47402214 + Nonsense_Mutation SNP G A A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 47402214 47402214 PSMC3 11 G A A 46 ZNF488 118738 genome.wustl.edu 36 10 47991112 47991112 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 47991112 47991112 ZNF488 10 C C A 28 LIMA1 51474 genome.wustl.edu 36 12 48928777 48928777 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 48928777 48928777 LIMA1 12 G G A 40 RHAG 6005 genome.wustl.edu 36 6 49690520 49690521 + Missense_Mutation DNP GA GA TT novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 GA GA GA TT GA GA Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation DNP 49690520 49690521 RHAG 6 GA GA TT 33 KRT74 121391 genome.wustl.edu 36 12 51248285 51248285 + Silent SNP G G A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 51248285 51248285 KRT74 12 G G A 42 MAGED1 9500 genome.wustl.edu 36 X 51655066 51655066 + Nonsense_Mutation SNP A A T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 51655066 51655066 MAGED1 23 A A T 13 FIP1L1 81608 genome.wustl.edu 36 4 53951540 53951540 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 53951540 53951540 FIP1L1 4 T T A 51 CGB5 93659 genome.wustl.edu 36 19 54240166 54240166 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 54240166 54240166 CGB5 19 T T C 54 STAT2 6773 genome.wustl.edu 36 12 55031427 55031427 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 55031427 55031427 STAT2 12 A A G 2 PCSK9 255738 genome.wustl.edu 36 1 55296327 55296327 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 55296327 55296327 PCSK9 1 C C A 23 OR5D18 219438 genome.wustl.edu 36 11 55343867 55343867 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 55343867 55343867 OR5D18 11 T T G 64 DST 667 genome.wustl.edu 36 6 56525723 56525723 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 56525723 56525723 DST 6 T T C 61 DST 667 genome.wustl.edu 36 6 56574323 56574323 + Silent SNP T T C novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 56574323 56574323 DST 6 T T C 60 DST 667 genome.wustl.edu 36 6 56605739 56605739 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 56605739 56605739 DST 6 C C T 19 PCDH17 27253 genome.wustl.edu 36 13 57106788 57106788 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 57106788 57106788 PCDH17 13 G G A 41 CNOT1 23019 genome.wustl.edu 36 16 57148389 57148389 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 57148389 57148389 CNOT1 16 A A G 3 FAM81A 145773 genome.wustl.edu 36 15 57539488 57539488 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 57539488 57539488 FAM81A 15 C C G 24 CDH26 60437 genome.wustl.edu 36 20 58004364 58004364 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 58004364 58004364 CDH26 20 G G A 41 LOC643680 643680 genome.wustl.edu 36 11 59753973 59753973 + Missense_Mutation SNP G A A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 59753973 59753973 LOC643680 11 G A A 47 NAT14 57106 genome.wustl.edu 36 19 60689988 60689988 + Missense_Mutation SNP G T T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 60689988 60689988 NAT14 19 G T T 47 HERC1 8925 genome.wustl.edu 36 15 61727326 61727326 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 61727326 61727326 HERC1 15 G G A 48 ZNF470 388566 genome.wustl.edu 36 19 61780271 61780271 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 61780271 61780271 ZNF470 19 A A G 10 ARHGEF9 23229 genome.wustl.edu 36 X 62815163 62815163 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 62815163 62815163 ARHGEF9 23 C C A 30 STIP1 10963 genome.wustl.edu 36 11 63718248 63718248 + Silent SNP A A G novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 63718248 63718248 STIP1 11 A A G 9 CMTM2 146225 genome.wustl.edu 36 16 65178426 65178426 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 65178426 65178426 CMTM2 16 G G C 48 RELA 5970 genome.wustl.edu 36 11 65184219 65184219 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 65184219 65184219 RELA 11 C C G 30 RBM4 5936 genome.wustl.edu 36 11 66168159 66168159 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 66168159 66168159 RBM4 11 G G A 42 KDM2A 22992 genome.wustl.edu 36 11 66778962 66778962 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 66778962 66778962 KDM2A 11 C C T 27 AR 367 genome.wustl.edu 36 X 66854056 66854056 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 66854056 66854056 AR 23 T T A 56 SUV420H1 51111 genome.wustl.edu 36 11 67682106 67682106 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 67682106 67682106 SUV420H1 11 C C A 28 KIF4A 24137 genome.wustl.edu 36 X 69490214 69490214 + Silent SNP A A G novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 69490214 69490214 KIF4A 23 A A G 7 BAI3 577 genome.wustl.edu 36 6 69741948 69741948 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 69741948 69741948 BAI3 6 C C G 25 SULF1 23213 genome.wustl.edu 36 8 70713610 70713610 + Silent SNP T T C novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 70713610 70713610 SULF1 8 T T C 49 CLEC4F 165530 genome.wustl.edu 36 2 70897742 70897742 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 70897742 70897742 CLEC4F 2 G G T 36 SIPA1L1 26037 genome.wustl.edu 36 14 71155239 71155239 + Missense_Mutation SNP A G G novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 A A G G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 71155239 71155239 SIPA1L1 14 A G G 16 C14orf43 91748 genome.wustl.edu 36 14 73275140 73275140 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 73275140 73275140 C14orf43 14 C C G 17 ALB 213 genome.wustl.edu 36 4 74493974 74493974 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 74493974 74493974 ALB 4 A A T 16 DQX1 165545 genome.wustl.edu 36 2 74604673 74604673 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 74604673 74604673 DQX1 2 G G A 43 TTLL5 23093 genome.wustl.edu 36 14 75319416 75319416 + Missense_Mutation SNP C T T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 75319416 75319416 TTLL5 14 C T T 22 HEXDC 284004 genome.wustl.edu 36 17 77984922 77984922 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 77984922 77984922 HEXDC 17 G G C 38 LRRC50 123872 genome.wustl.edu 36 16 82761021 82761021 + Silent SNP G G A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 82761021 82761021 LRRC50 16 G G A 35 CREBZF 58487 genome.wustl.edu 36 11 85052903 85052903 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 85052903 85052903 CREBZF 11 C C A 31 SLITRK6 84189 genome.wustl.edu 36 13 85268362 85268362 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 85268362 85268362 SLITRK6 13 G G T 35 KLHL4 56062 genome.wustl.edu 36 X 86759705 86759705 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 86759705 86759705 KLHL4 23 C C A 24 RMND5A 64795 genome.wustl.edu 36 2 86845685 86845685 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 86845685 86845685 RMND5A 2 G G C 46 PTPN13 5783 genome.wustl.edu 36 4 87899222 87899222 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 87899222 87899222 PTPN13 4 C C G 32 SPG7 6687 genome.wustl.edu 36 16 88130791 88130791 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 88130791 88130791 SPG7 16 C C T 31 RPIA 22934 genome.wustl.edu 36 2 88809936 88809936 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 88809936 88809936 RPIA 2 G G A 42 C14orf102 55051 genome.wustl.edu 36 14 89854202 89854202 + Missense_Mutation SNP A A C novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 89854202 89854202 C14orf102 14 A A C 7 ENSG00000189002 genome.wustl.edu 36 3 90337887 90337887 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 90337887 90337887 ENSG00000189002 3 C C A 28 CCDC18 343099 genome.wustl.edu 36 1 93450248 93450248 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 93450248 93450248 CCDC18 1 T T G 52 GPR83 10888 genome.wustl.edu 36 11 93753026 93753026 + Silent SNP G G T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 93753026 93753026 GPR83 11 G G T 35 SERPINA10 51156 genome.wustl.edu 36 14 93820080 93820080 + Missense_Mutation SNP C A A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C A A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 93820080 93820080 SERPINA10 14 C A A 24 C9orf129 445577 genome.wustl.edu 36 9 95120651 95120651 + Silent SNP T T A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 95120651 95120651 C9orf129 9 T T A 55 DYNC1I1 1780 genome.wustl.edu 36 7 95280563 95280563 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 95280563 95280563 DYNC1I1 7 G G A 35 CYP2C19 1557 genome.wustl.edu 36 10 96602522 96602522 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 96602522 96602522 CYP2C19 10 T T A 55 ZNF498 221785 genome.wustl.edu 36 7 99056982 99056982 + Silent SNP C C T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 99056982 99056982 ZNF498 7 C C T 27 C7orf52 375607 genome.wustl.edu 36 7 100604696 100604696 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 100604696 100604696 C7orf52 7 G G T 42 ZNHIT1 10467 genome.wustl.edu 36 7 100653815 100653815 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 100653815 100653815 ZNHIT1 7 C C T 27 COL11A1 1301 genome.wustl.edu 36 1 103119897 103119897 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 103119897 103119897 COL11A1 1 A A T 12 GPR132 29933 genome.wustl.edu 36 14 104589084 104589084 + Silent SNP C C T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 104589084 104589084 GPR132 14 C C T 17 CCDC147 159686 genome.wustl.edu 36 10 106108143 106108143 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 106108143 106108143 CCDC147 10 G G C 33 SSH1 54434 genome.wustl.edu 36 12 107717052 107717052 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 107717052 107717052 SSH1 12 G G A 42 FOXN4 121643 genome.wustl.edu 36 12 108210046 108210046 + Missense_Mutation SNP G A A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G A A G A Unknown Valid LOH 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 108210046 108210046 FOXN4 12 G A A 43 ZNF277 11179 genome.wustl.edu 36 7 111723525 111723525 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 111723525 111723525 ZNF277 7 C C A 17 CSMD3 114788 genome.wustl.edu 36 8 113395848 113395848 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 113395848 113395848 CSMD3 8 A A T 3 TCF7L2 6934 genome.wustl.edu 36 10 114839151 114839151 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 114839151 114839151 TCF7L2 10 C C G 26 NOS1 4842 genome.wustl.edu 36 12 116178198 116178198 + Silent SNP G G T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 116178198 116178198 NOS1 12 G G T 43 EXT1 2131 genome.wustl.edu 36 8 118894310 118894310 + Silent SNP C C T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 118894310 118894310 EXT1 8 C C T 23 CCDC64 92558 genome.wustl.edu 36 12 119003073 119003073 + Splice_Site_SNP SNP G G C novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 119003073 119003073 CCDC64 12 G G C 35 TLR4 7099 genome.wustl.edu 36 9 119510687 119510687 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 119510687 119510687 TLR4 9 G G T 46 ZNF697 90874 genome.wustl.edu 36 1 119970088 119970088 + Silent SNP C C T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 119970088 119970088 ZNF697 1 C C T 23 BAG3 9531 genome.wustl.edu 36 10 121422103 121422103 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 121422103 121422103 BAG3 10 C C T 19 CCDC62 84660 genome.wustl.edu 36 12 121856670 121856670 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G A G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 121856670 121856670 CCDC62 12 G G A 33 DNAH10 196385 genome.wustl.edu 36 12 122855451 122855451 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 122855451 122855451 DNAH10 12 C C A 17 DNAH10 196385 genome.wustl.edu 36 12 122863771 122863771 + Silent SNP T T A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 122863771 122863771 DNAH10 12 T T A 54 GOLGB1 2804 genome.wustl.edu 36 3 122898250 122898250 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 122898250 122898250 GOLGB1 3 T T A 60 ZNF202 7753 genome.wustl.edu 36 11 123102703 123102703 + Missense_Mutation SNP T C C novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 T T C C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 123102703 123102703 ZNF202 11 T C C 57 FAM162A 26355 genome.wustl.edu 36 3 123605880 123605880 + Silent SNP T T C novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 123605880 123605880 FAM162A 3 T T C 51 VSIG2 23584 genome.wustl.edu 36 11 124123564 124123564 + Silent SNP G A A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 124123564 124123564 VSIG2 11 G A A 33 SEMA5B 54437 genome.wustl.edu 36 3 124162677 124162677 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 124162677 124162677 SEMA5B 3 C C A 22 ZHX1 11244 genome.wustl.edu 36 8 124336392 124336392 + Nonsense_Mutation SNP C C A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 124336392 124336392 ZHX1 8 C C A 30 RPL35 11224 genome.wustl.edu 36 9 126660108 126660108 + Silent SNP C C T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 126660108 126660108 RPL35 9 C C T 26 GPR119 139760 genome.wustl.edu 36 X 129346190 129346190 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 129346190 129346190 GPR119 23 G G A 35 ST14 6768 genome.wustl.edu 36 11 129575215 129575215 + Missense_Mutation SNP A A C novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 129575215 129575215 ST14 11 A A C 6 IL3 3562 genome.wustl.edu 36 5 131426144 131426144 + Silent SNP C C A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 131426144 131426144 IL3 5 C C A 21 PDLIM4 8572 genome.wustl.edu 36 5 131635725 131635725 + Silent SNP G G A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 131635725 131635725 PDLIM4 5 G G A 42 PIK3R4 30849 genome.wustl.edu 36 3 131887939 131887939 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 131887939 131887939 PIK3R4 3 T T G 54 SPOCK1 6695 genome.wustl.edu 36 5 136356177 136356177 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 136356177 136356177 SPOCK1 5 T T G 63 PSD2 84249 genome.wustl.edu 36 5 139196765 139196765 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 139196765 139196765 PSD2 5 A A G 3 FAM135B 51059 genome.wustl.edu 36 8 139249384 139249384 + Silent SNP G G A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 139249384 139249384 FAM135B 8 G G A 37 ATR 545 genome.wustl.edu 36 3 143686726 143686726 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 143686726 143686726 ATR 3 T T A 60 CYP11B1 1584 genome.wustl.edu 36 8 143956176 143956176 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 T T T C T C Unknown Valid Germline 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 143956176 143956176 CYP11B1 8 T T C 53 SLITRK2 84631 genome.wustl.edu 36 X 144712039 144712039 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 144712039 144712039 SLITRK2 23 G G A 34 SPINK5 11005 genome.wustl.edu 36 5 147491087 147491087 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 147491087 147491087 SPINK5 5 G G C 48 ZNF425 155054 genome.wustl.edu 36 7 148432349 148432349 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 148432349 148432349 ZNF425 7 T T C 59 CGN 57530 genome.wustl.edu 36 1 149774954 149774954 + Silent SNP G G A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 149774954 149774954 CGN 1 G G A 36 LCE3E 353145 genome.wustl.edu 36 1 150805082 150805082 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 150805082 150805082 LCE3E 1 C C T 18 KIAA0922 23240 genome.wustl.edu 36 4 154722035 154722035 + Silent SNP T T G novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 154722035 154722035 KIAA0922 4 T T G 64 NR4A2 4929 genome.wustl.edu 36 2 156891607 156891607 + Silent SNP C C A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 156891607 156891607 NR4A2 2 C C A 29 FCRL6 343413 genome.wustl.edu 36 1 158051862 158051862 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 158051862 158051862 FCRL6 1 G G C 40 F5 2153 genome.wustl.edu 36 1 167751388 167751388 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 167751388 167751388 F5 1 T T C 49 C6orf70 55780 genome.wustl.edu 36 6 169921305 169921306 + Missense_Mutation DNP GC AG AG novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 GC GC AG AG GC GC Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation DNP 169921305 169921306 C6orf70 6 GC AG AG 34 FAM5B 57795 genome.wustl.edu 36 1 175517201 175517201 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 175517201 175517201 FAM5B 1 G G A 44 TTN 7273 genome.wustl.edu 36 2 179193272 179193272 + Silent SNP G G A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 179193272 179193272 TTN 2 G G A 40 TTN 7273 genome.wustl.edu 36 2 179206827 179206827 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 179206827 179206827 TTN 2 A A T 10 TTN 7273 genome.wustl.edu 36 2 179321800 179321800 + Silent SNP A A G novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 179321800 179321800 TTN 2 A A G 4 ING2 3622 genome.wustl.edu 36 4 184669015 184669015 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 184669015 184669015 ING2 4 G G T 44 TLR3 7098 genome.wustl.edu 36 4 187240618 187240618 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 187240618 187240618 TLR3 4 A A G 6 KCNH1 3756 genome.wustl.edu 36 1 209258748 209258748 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 209258748 209258748 KCNH1 1 C C A 24 USH2A 7399 genome.wustl.edu 36 1 214210718 214210718 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 214210718 214210718 USH2A 1 A A G 16 TMEM63A 9725 genome.wustl.edu 36 1 224101408 224101408 + Nonsense_Mutation SNP G G A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 224101408 224101408 TMEM63A 1 G G A 46 WNT9A 7483 genome.wustl.edu 36 1 226178521 226178521 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 226178521 226178521 WNT9A 1 G G A 40 SP110 3431 genome.wustl.edu 36 2 230785783 230785783 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 230785783 230785783 SP110 2 G G C 42 TEF 7008 genome.wustl.edu 36 22 40113439 40113444 + In_Frame_Del DEL TGGACC TGGACC - novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 TGGACC TGGACC TGGACC - TGGACC TGGACC Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU In_Frame_Del DEL 40113439 40113444 TEF 22 TGGACC TGGACC - 51 CNGA1 1259 genome.wustl.edu 36 4 47634209 47634212 + Frame_Shift_Del DEL GACCAGTAAAGG GACCAGTAAAGG TA novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 GACCAGTAAAGG GACCAGTAAAGG GACCAGTAAAGG TA GACCAGTAAAGG GACCAGTAAAGG Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 47634209 47634212 CNGA1 4 GACCAGTAAAGG GACCAGTAAAGG TA 1 COL9A1 1297 genome.wustl.edu 36 6 70999156 70999180 + Frame_Shift_Del DEL TCTGGACGCTTAAGACTGGCAGCCA TCTGGACGCTTAAGACTGGCAGCCA - novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 TCTGGACGCTTAAGACTGGCAGCCA TCTGGACGCTTAAGACTGGCAGCCA TCTGGACGCTTAAGACTGGCAGCCA - TCTGGACGCTTAAGACTGGCAGCCA TCTGGACGCTTAAGACTGGCAGCCA Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 70999156 70999180 COL9A1 6 TCTGGACGCTTAAGACTGGCAGCCA TCTGGACGCTTAAGACTGGCAGCCA - 58 SPEG 10290 genome.wustl.edu 36 2 220024122 220024154 + In_Frame_Del DEL GTGTCCGCTGGAGAAGAGCCCCTAGAGGCCCCT GTGTCCGCTGGAGAAGAGCCCCTAGAGGCCCCT - novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 GTGTCCGCTGGAGAAGAGCCCCTAGAGGCCCCT GTGTCCGCTGGAGAAGAGCCCCTAGAGGCCCCT GTGTCCGCTGGAGAAGAGCCCCTAGAGGCCCCT - GTGTCCGCTGGAGAAGAGCCCCTAGAGGCCCCT GTGTCCGCTGGAGAAGAGCCCCTAGAGGCCCCT Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU In_Frame_Del DEL 220024122 220024154 SPEG 2 GTGTCCGCTGGAGAAGAGCCCCTAGAGGCCCCT GTGTCCGCTGGAGAAGAGCCCCTAGAGGCCCCT - 40 TP53 7157 genome.wustl.edu 36 17 7517869 7517869 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 A A A G A A Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7517869 7517869 TP53 17 A A G 7 LRP1 4035 genome.wustl.edu 36 12 55857547 55857547 + Missense_Mutation SNP C C T Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C T C C Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 55857547 55857547 LRP1 12 C C T 27 RAB3IP 117177 genome.wustl.edu 36 12 68419907 68419907 + Missense_Mutation SNP A A C novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 68419907 68419907 RAB3IP 12 A A C 3 KIR3DL3 115653 genome.wustl.edu 36 19 59931137 59931137 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 59931137 59931137 KIR3DL3 19 T T A 56 TMEM108 66000 genome.wustl.edu 36 3 134582534 134582534 + Missense_Mutation SNP T T A Unknown TCGA-13-0760-01 TCGA-13-0760-10 T T T A T T Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 134582534 134582534 TMEM108 3 T T A 54 C6orf70 55780 genome.wustl.edu 36 6 169921306 169921306 + Missense_Mutation SNP C G G novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C G G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 169921306 169921306 C6orf70 6 C G G 25 RREB1 6239 genome.wustl.edu 36 6 7175676 7175676 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7175676 7175676 RREB1 6 G G T 43 TLR4 7099 genome.wustl.edu 36 9 119516667 119516667 + Missense_Mutation SNP G G A Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G A G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 119516667 119516667 TLR4 9 G G A 34 CNGA1 1259 genome.wustl.edu 36 4 47634201 47634206 + In_Frame_Del DEL GACCAG GACCAG - Unknown TCGA-13-0760-01 TCGA-13-0760-10 GACCAG GACCAG GACCAG - GACCAG GACCAG Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU In_Frame_Del DEL 47634201 47634206 CNGA1 4 GACCAG GACCAG - 33 LAMA4 3910 genome.wustl.edu 36 6 112682024 112682040 + Frame_Shift_Del DEL GCCAGGCTGAGCTCAAA GCCAGGCTGAGCTCAAA - Unknown TCGA-13-0760-01 TCGA-13-0760-10 GCCAGGCTGAGCTCAAA GCCAGGCTGAGCTCAAA GCCAGGCTGAGCTCAAA - GCCAGGCTGAGCTCAAA GCCAGGCTGAGCTCAAA Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 112682024 112682040 LAMA4 6 GCCAGGCTGAGCTCAAA GCCAGGCTGAGCTCAAA - 38 EIF3K 27335 genome.wustl.edu 36 19 43801800 43801800 + Missense_Mutation SNP A A G Unknown TCGA-13-0760-01 TCGA-13-0760-10 A A A G A A Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 43801800 43801800 EIF3K 19 A A G 16 CHAF1B 8208 genome.wustl.edu 36 21 36680416 36680416 + Missense_Mutation SNP G G T Unknown TCGA-13-0760-01 TCGA-13-0760-10 G G G T G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 36680416 36680416 CHAF1B 21 G G T 41 C2CD2 25966 genome.wustl.edu 36 21 42200854 42200854 + Missense_Mutation SNP C C G Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C G C C Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 42200854 42200854 C2CD2 21 C C G 26 SLC10A3 8273 genome.wustl.edu 36 X 153369636 153369636 + Missense_Mutation SNP C C T Unknown TCGA-13-0760-01 TCGA-13-0760-10 C C C T C C Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 153369636 153369636 SLC10A3 23 C C T 30