Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
BTBD12	84464	genome.wustl.edu	36	16	3587923	3587923	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	3587923	3587923	BTBD12	16	G	G	A	40
ZNF557	79230	genome.wustl.edu	36	19	7034614	7034614	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	7034614	7034614	ZNF557	19	C	C	T	24
TP53	7157	genome.wustl.edu	36	17	7519186	7519186	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	7519186	7519186	TP53	17	C	A	A	19
FBN3	84467	genome.wustl.edu	36	19	8061128	8061128	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	8061128	8061128	FBN3	19	C	C	G	26
AP1M2	10053	genome.wustl.edu	36	19	10551457	10551457	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	10551457	10551457	AP1M2	19	G	G	A	39
FAM86B1	85002	genome.wustl.edu	36	8	12081419	12081419	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	C	C	C	T	C	T	Unknown	Valid	Germline	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	12081419	12081419	FAM86B1	8	C	C	T	31
NOTCH3	4854	genome.wustl.edu	36	19	15137882	15137882	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	15137882	15137882	NOTCH3	19	G	G	T	34
NOTCH3	4854	genome.wustl.edu	36	19	15139142	15139142	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	15139142	15139142	NOTCH3	19	G	G	C	41
NOTCH3	4854	genome.wustl.edu	36	19	15142228	15142228	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	15142228	15142228	NOTCH3	19	G	G	A	41
CYP4F11	57834	genome.wustl.edu	36	19	15886127	15886127	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	15886127	15886127	CYP4F11	19	G	G	A	37
NT5C1B	93034	genome.wustl.edu	36	2	18631851	18631851	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	18631851	18631851	NT5C1B	2	G	G	A	40
NCOA6	23054	genome.wustl.edu	36	20	32793676	32793676	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	32793676	32793676	NCOA6	20	A	A	C	9
GBA2	57704	genome.wustl.edu	36	9	35728807	35728807	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	35728807	35728807	GBA2	9	C	T	T	23
FAM75A3	727830	genome.wustl.edu	36	9	40695599	40695599	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	40695599	40695599	FAM75A3	9	G	A	A	37
TCEB3B	51224	genome.wustl.edu	36	18	42814012	42814012	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	42814012	42814012	TCEB3B	18	G	G	T	39
PSG1	5669	genome.wustl.edu	36	19	48068034	48068034	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	48068034	48068034	PSG1	19	T	T	C	54
ENSG00000169164		genome.wustl.edu	36	X	55697965	55697965	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	55697965	55697965	ENSG00000169164	23	T	T	A	54
OR8J1	219477	genome.wustl.edu	36	11	55884585	55884585	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	55884585	55884585	OR8J1	11	A	A	C	9
OR8U1	219417	genome.wustl.edu	36	11	55900385	55900385	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	55900385	55900385	OR8U1	11	C	C	A	28
ZNF713	349075	genome.wustl.edu	36	7	55958886	55958886	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	55958886	55958886	ZNF713	7	G	G	C	35
C5orf44	80006	genome.wustl.edu	36	5	64993649	64993649	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	64993649	64993649	C5orf44	5	A	A	G	12
DPP3	10072	genome.wustl.edu	36	11	66028817	66028817	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	66028817	66028817	DPP3	11	T	T	G	63
GMCL1	64395	genome.wustl.edu	36	2	69918248	69918248	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	69918248	69918248	GMCL1	2	A	A	G	10
KRR1	11103	genome.wustl.edu	36	12	74184022	74184022	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	74184022	74184022	KRR1	12	G	G	A	40
CARD14	79092	genome.wustl.edu	36	17	75792656	75792656	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	75792656	75792656	CARD14	17	C	C	T	31
PPEF2	5470	genome.wustl.edu	36	4	77030294	77030294	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	77030294	77030294	PPEF2	4	C	C	T	27
SEMA3C	10512	genome.wustl.edu	36	7	80270014	80270014	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	80270014	80270014	SEMA3C	7	C	C	G	25
KRCC1	51315	genome.wustl.edu	36	2	88108971	88108971	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	88108971	88108971	KRCC1	2	T	T	C	52
MMRN1	22915	genome.wustl.edu	36	4	91076033	91076033	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	91076033	91076033	MMRN1	4	G	G	A	47
MINA	84864	genome.wustl.edu	36	3	99151416	99151416	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	99151416	99151416	MINA	3	G	G	C	35
TBC1D8B	54885	genome.wustl.edu	36	X	105950873	105950873	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	105950873	105950873	TBC1D8B	23	A	A	G	1
PHTF1	10745	genome.wustl.edu	36	1	114050766	114050766	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	114050766	114050766	PHTF1	1	C	C	A	21
MTHFD1L	25902	genome.wustl.edu	36	6	151378379	151378379	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	151378379	151378379	MTHFD1L	6	G	G	C	45
GABRQ	55879	genome.wustl.edu	36	X	151571967	151571967	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	151571967	151571967	GABRQ	23	A	A	G	8
GRB14	2888	genome.wustl.edu	36	2	165067068	165067068	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	165067068	165067068	GRB14	2	A	A	T	4
SLITRK3	22865	genome.wustl.edu	36	3	166389085	166389085	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	166389085	166389085	SLITRK3	3	A	A	T	12
ABCC5	10057	genome.wustl.edu	36	3	185121875	185121875	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	185121875	185121875	ABCC5	3	C	C	T	20
CREBBP	1387	genome.wustl.edu	36	16	3760937	3760943	+	Frame_Shift_Del	DEL	GAGGCCC	GAGGCCC	-	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	GAGGCCC	GAGGCCC	GAGGCCC	-	GAGGCCC	GAGGCCC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Frame_Shift_Del	DEL	3760937	3760943	CREBBP	16	GAGGCCC	GAGGCCC	-	45
MMP19	4327	genome.wustl.edu	36	12	54517349	54517351	+	In_Frame_Del	DEL	AAC	AAC	-	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	AAC	AAC	AAC	-	AAC	AAC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	In_Frame_Del	DEL	54517349	54517351	MMP19	12	AAC	AAC	-	1
DPYD	1806	genome.wustl.edu	36	1	97929868	97929868	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10			C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	97929868	97929868	DPYD	1	C	C	A	18
FMO5	2330	genome.wustl.edu	36	1	145163196	145163196	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10			G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	145163196	145163196	FMO5	1	G	G	T	33
BCL9	607	genome.wustl.edu	36	1	145558344	145558344	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10			C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA		dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	145558344	145558344	BCL9	1	C	C	G	32
CHRM3	1131	genome.wustl.edu	36	1	238138533	238138533	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10			G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	238138533	238138533	CHRM3	1	G	G	C	41
LUZP4	51213	genome.wustl.edu	36	X	114430672	114430672	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10			G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	114430672	114430672	LUZP4	23	G	G	T	35
SDC3	9672	genome.wustl.edu	36	1	31122403	31122403	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	31122403	31122403	SDC3	1	C	C	T	28
NOTCH3	4854	genome.wustl.edu	36	19	15142296	15142296	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	15142296	15142296	NOTCH3	19	G	G	A	34
SON	6651	genome.wustl.edu	36	21	33854113	33854113	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	33854113	33854113	SON	21	T	T	A	64
FGF5	2250	genome.wustl.edu	36	4	81407214	81407214	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0724-01	TCGA-13-0724-10	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	81407214	81407214	FGF5	4	G	G	T	41