Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context OR4F5 79501 genome.wustl.edu 36 1 59625 59625 + Missense_Mutation SNP T T G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 59625 59625 OR4F5 1 T T G 49 SLC6A3 6531 genome.wustl.edu 36 5 1462901 1462901 + Missense_Mutation SNP G G C novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 1462901 1462901 SLC6A3 5 G G C 39 SEPX1 51734 genome.wustl.edu 36 16 1930805 1930805 + Missense_Mutation SNP G G T novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 1930805 1930805 SEPX1 16 G G T 46 MYOM1 8736 genome.wustl.edu 36 18 3069264 3069264 + Missense_Mutation SNP G G C novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 3069264 3069264 MYOM1 18 G G C 42 CELF5 60680 genome.wustl.edu 36 19 3233187 3233187 + Missense_Mutation SNP T T C novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 3233187 3233187 CELF5 19 T T C 56 DFFB 1677 genome.wustl.edu 36 1 3772119 3772119 + Silent SNP T T C novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 3772119 3772119 DFFB 1 T T C 55 LRG1 116844 genome.wustl.edu 36 19 4489173 4489173 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 4489173 4489173 LRG1 19 C C T 19 SEC14L5 9717 genome.wustl.edu 36 16 4995935 4995935 + Missense_Mutation SNP A A G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 4995935 4995935 SEC14L5 16 A A G 11 GRM7 2917 genome.wustl.edu 36 3 6878441 6878441 + Missense_Mutation SNP C A A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C A A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 6878441 6878441 GRM7 3 C A A 31 ATN1 1822 genome.wustl.edu 36 12 6918599 6918599 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 6918599 6918599 ATN1 12 C C T 25 CAGE1 285782 genome.wustl.edu 36 6 7318748 7318748 + Missense_Mutation SNP C C A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7318748 7318748 CAGE1 6 C C A 17 PNPLA6 10908 genome.wustl.edu 36 19 7525516 7525516 + Silent SNP C C T novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 7525516 7525516 PNPLA6 19 C C T 19 PFAS 5198 genome.wustl.edu 36 17 8099559 8099559 + Silent SNP G G A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 8099559 8099559 PFAS 17 G G A 40 MYH8 4626 genome.wustl.edu 36 17 10244527 10244527 + Missense_Mutation SNP G G T novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 10244527 10244527 MYH8 17 G G T 46 LOC642451 642451 genome.wustl.edu 36 16 11028662 11028662 + Missense_Mutation SNP A A C novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 11028662 11028662 LOC642451 16 A A C 9 HERV-FRD 405754 genome.wustl.edu 36 6 11213309 11213309 + Missense_Mutation SNP A A C novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 11213309 11213309 HERV-FRD 6 A A C 4 ZNF833 401898 genome.wustl.edu 36 19 11657542 11657542 + Missense_Mutation SNP T T A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 11657542 11657542 ZNF833 19 T T A 58 NPPB 4879 genome.wustl.edu 36 1 11841068 11841068 + Nonsense_Mutation SNP C C A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 11841068 11841068 NPPB 1 C C A 30 CIDEA 1149 genome.wustl.edu 36 18 12264107 12264107 + Missense_Mutation SNP C C A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 12264107 12264107 CIDEA 18 C C A 22 DAND5 199699 genome.wustl.edu 36 19 12941509 12941509 + Missense_Mutation SNP T T G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 12941509 12941509 DAND5 19 T T G 55 MC5R 4161 genome.wustl.edu 36 18 13816421 13816421 + Silent SNP C C T novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 13816421 13816421 MC5R 18 C C T 31 LOC90379 90379 genome.wustl.edu 36 19 13931608 13931608 + Silent SNP A A G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 13931608 13931608 LOC90379 19 A A G 6 OR10H4 126541 genome.wustl.edu 36 19 15921303 15921303 + Silent SNP G G A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 15921303 15921303 OR10H4 19 G G A 37 NSUN6 221078 genome.wustl.edu 36 10 18980066 18980066 + Nonsense_Mutation SNP C C A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 18980066 18980066 NSUN6 10 C C A 30 NCAN 1463 genome.wustl.edu 36 19 19196156 19196156 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 19196156 19196156 NCAN 19 G G A 40 NPC1 4864 genome.wustl.edu 36 18 19372552 19372552 + Missense_Mutation SNP A A C novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 19372552 19372552 NPC1 18 A A C 9 EFHB 151651 genome.wustl.edu 36 3 19950031 19950031 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 19950031 19950031 EFHB 3 C C T 25 DNAH3 55567 genome.wustl.edu 36 16 21000511 21000511 + Missense_Mutation SNP T T G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 21000511 21000511 DNAH3 16 T T G 64 LOC100131998 0 genome.wustl.edu 36 16 22348687 22348687 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 22348687 22348687 LOC100131998 16 C C T 30 ARID1A 8289 genome.wustl.edu 36 1 26960004 26960004 + Nonsense_Mutation SNP C C G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 26960004 26960004 ARID1A 1 C C G 29 STK38L 23012 genome.wustl.edu 36 12 27353314 27353314 + Missense_Mutation SNP G G C novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 27353314 27353314 STK38L 12 G G C 44 RHOT1 55288 genome.wustl.edu 36 17 27527332 27527332 + Missense_Mutation SNP G G C novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 27527332 27527332 RHOT1 17 G G C 33 CDK5R1 8851 genome.wustl.edu 36 17 27839273 27839273 + Silent SNP C T T novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 27839273 27839273 CDK5R1 17 C T T 23 C8orf80 389643 genome.wustl.edu 36 8 27943808 27943808 + Missense_Mutation SNP T T A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 27943808 27943808 C8orf80 8 T T A 56 MTUS2 23281 genome.wustl.edu 36 13 28796764 28796764 + Missense_Mutation SNP G A A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 28796764 28796764 MTUS2 13 G A A 46 WRN 7486 genome.wustl.edu 36 8 31068951 31068951 + Missense_Mutation SNP T T G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 31068951 31068951 WRN 8 T T G 61 DMD 1756 genome.wustl.edu 36 X 32290831 32290831 + Nonsense_Mutation SNP C C A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 32290831 32290831 DMD 23 C C A 21 DDX52 11056 genome.wustl.edu 36 17 33064181 33064181 + Missense_Mutation SNP C C A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 33064181 33064181 DDX52 17 C C A 25 FNDC5 252995 genome.wustl.edu 36 1 33106019 33106019 + Missense_Mutation SNP T T A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 33106019 33106019 FNDC5 1 T T A 51 RBL1 5933 genome.wustl.edu 36 20 35094482 35094482 + Missense_Mutation SNP C C G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 35094482 35094482 RBL1 20 C C G 24 PDXP 57026 genome.wustl.edu 36 22 36391593 36391593 + Missense_Mutation SNP G G C novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 36391593 36391593 PDXP 22 G G C 36 CCDC123 84902 genome.wustl.edu 36 19 38114236 38114236 + Missense_Mutation SNP T T A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 38114236 38114236 CCDC123 19 T T A 51 BUB1B 701 genome.wustl.edu 36 15 38292066 38292066 + Missense_Mutation SNP T T A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 38292066 38292066 BUB1B 15 T T A 50 SCN10A 6336 genome.wustl.edu 36 3 38714850 38714850 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 38714850 38714850 SCN10A 3 G G A 33 CCR8 1237 genome.wustl.edu 36 3 39349522 39349522 + Missense_Mutation SNP C C G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 39349522 39349522 CCR8 3 C C G 17 BRWD1 54014 genome.wustl.edu 36 21 39568229 39568229 + Missense_Mutation SNP C C A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 39568229 39568229 BRWD1 21 C C A 30 EHD4 30844 genome.wustl.edu 36 15 40033268 40033268 + Silent SNP G G A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 40033268 40033268 EHD4 15 G G A 40 PHOX2B 8929 genome.wustl.edu 36 4 41445365 41445365 + Missense_Mutation SNP G T T novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G T T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 41445365 41445365 PHOX2B 4 G T T 33 HECW1 23072 genome.wustl.edu 36 7 43499238 43499238 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 43499238 43499238 HECW1 7 G G A 38 NPC1L1 29881 genome.wustl.edu 36 7 44522980 44522980 + Silent SNP G G A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 44522980 44522980 NPC1L1 7 G G A 47 ZNF197 10168 genome.wustl.edu 36 3 44645733 44645733 + Missense_Mutation SNP C C A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 44645733 44645733 ZNF197 3 C C A 18 SHKBP1 92799 genome.wustl.edu 36 19 45781214 45781214 + Missense_Mutation SNP G G C novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 45781214 45781214 SHKBP1 19 G G C 42 MAST2 23139 genome.wustl.edu 36 1 46274325 46274325 + Nonstop_Mutation SNP G G C novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonstop_Mutation SNP 46274325 46274325 MAST2 1 G G C 34 LRRC2 79442 genome.wustl.edu 36 3 46538078 46538078 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 46538078 46538078 LRRC2 3 C C T 23 PSMC3 5702 genome.wustl.edu 36 11 47401073 47401073 + Missense_Mutation SNP T T G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 47401073 47401073 PSMC3 11 T T G 62 DHX30 22907 genome.wustl.edu 36 3 47863811 47863811 + Silent SNP G G A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 47863811 47863811 DHX30 3 G G A 47 OR4C46 119749 genome.wustl.edu 36 11 51372438 51372438 + Missense_Mutation SNP A A T novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 51372438 51372438 OR4C46 11 A A T 9 PKHD1 5314 genome.wustl.edu 36 6 52025839 52025839 + Missense_Mutation SNP C C G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 52025839 52025839 PKHD1 6 C C G 19 HNRNPA1 3178 genome.wustl.edu 36 12 52961503 52961503 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 52961503 52961503 HNRNPA1 12 G G A 45 NCKAP1L 3071 genome.wustl.edu 36 12 53216270 53216270 + Missense_Mutation SNP C C G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 53216270 53216270 NCKAP1L 12 C C G 32 CACNA1D 776 genome.wustl.edu 36 3 53733046 53733046 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 53733046 53733046 CACNA1D 3 G G A 34 USP24 23358 genome.wustl.edu 36 1 55316852 55316852 + Missense_Mutation SNP A A G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 55316852 55316852 USP24 1 A A G 14 OR5D16 390144 genome.wustl.edu 36 11 55362906 55362906 + Missense_Mutation SNP G G C novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 55362906 55362906 OR5D16 11 G G C 42 NLRC5 84166 genome.wustl.edu 36 16 55646900 55646900 + Silent SNP G G A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 55646900 55646900 NLRC5 16 G G A 46 COL21A1 81578 genome.wustl.edu 36 6 56152449 56152449 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 56152449 56152449 COL21A1 6 C C T 32 ZNF610 162963 genome.wustl.edu 36 19 57548776 57548776 + Silent SNP C C T novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 57548776 57548776 ZNF610 19 C C T 31 LILRB4 11006 genome.wustl.edu 36 19 59867610 59867610 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 59867610 59867610 LILRB4 19 G G A 34 SS18L1 26039 genome.wustl.edu 36 20 60173926 60173926 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 60173926 60173926 SS18L1 20 C C T 23 PGA3 643834 genome.wustl.edu 36 11 60728299 60728299 + Silent SNP C C A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 60728299 60728299 PGA3 11 C C A 22 CDH19 28513 genome.wustl.edu 36 18 62329838 62329838 + Missense_Mutation SNP T T A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 62329838 62329838 CDH19 18 T T A 52 THOC7 80145 genome.wustl.edu 36 3 63795871 63795871 + Missense_Mutation SNP T T A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 63795871 63795871 THOC7 3 T T A 64 DIS3L 115752 genome.wustl.edu 36 15 64405758 64405758 + Splice_Site_SNP SNP T T G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 64405758 64405758 DIS3L 15 T T G 57 GPX2 2877 genome.wustl.edu 36 14 64476019 64476019 + Silent SNP G G C novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 64476019 64476019 GPX2 14 G G C 46 LOC100132437 genome.wustl.edu 36 9 68357723 68357723 + Missense_Mutation SNP A A G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 68357723 68357723 LOC100132437 9 A A G 12 DCAF5 8816 genome.wustl.edu 36 14 68591701 68591701 + Silent SNP G G T novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 68591701 68591701 DCAF5 14 G G T 43 MED12 9968 genome.wustl.edu 36 X 70269528 70269528 + Missense_Mutation SNP C C G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 70269528 70269528 MED12 23 C C G 18 LRRC7 57554 genome.wustl.edu 36 1 70291391 70291391 + Missense_Mutation SNP T T A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 70291391 70291391 LRRC7 1 T T A 57 PMFBP1 83449 genome.wustl.edu 36 16 70731875 70731875 + Silent SNP C C T novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 70731875 70731875 PMFBP1 16 C C T 24 DHCR7 1717 genome.wustl.edu 36 11 70830965 70830965 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 70830965 70830965 DHCR7 11 G G A 36 FOLR1 2348 genome.wustl.edu 36 11 71584666 71584666 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 71584666 71584666 FOLR1 11 G G A 45 ZNF236 7776 genome.wustl.edu 36 18 72709644 72709644 + Nonsense_Mutation SNP G G T novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 72709644 72709644 ZNF236 18 G G T 45 KCNQ5 56479 genome.wustl.edu 36 6 73877773 73877773 + Missense_Mutation SNP G G C novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 73877773 73877773 KCNQ5 6 G G C 46 MTO1 25821 genome.wustl.edu 36 6 74240007 74240007 + Missense_Mutation SNP A A G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 74240007 74240007 MTO1 6 A A G 1 COL12A1 1303 genome.wustl.edu 36 6 75900411 75900411 + Missense_Mutation SNP G G C novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 75900411 75900411 COL12A1 6 G G C 44 FRAS1 80144 genome.wustl.edu 36 4 79514397 79514397 + Missense_Mutation SNP A A T novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 79514397 79514397 FRAS1 4 A A T 14 BTBD1 53339 genome.wustl.edu 36 15 81516183 81516183 + Missense_Mutation SNP G G C novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 81516183 81516183 BTBD1 15 G G C 48 PDE8A 5151 genome.wustl.edu 36 15 83411368 83411368 + Silent SNP G G A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G A G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 83411368 83411368 PDE8A 15 G G A 47 SNAP91 9892 genome.wustl.edu 36 6 84327316 84327316 + Missense_Mutation SNP C C A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 84327316 84327316 SNAP91 6 C C A 28 CEP290 80184 genome.wustl.edu 36 12 86978787 86978787 + Missense_Mutation SNP A A G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 86978787 86978787 CEP290 12 A A G 5 LDB3 11155 genome.wustl.edu 36 10 88441666 88441666 + Silent SNP C C T novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 88441666 88441666 LDB3 10 C C T 27 MAN2A2 4122 genome.wustl.edu 36 15 89251066 89251066 + Missense_Mutation SNP C C G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 89251066 89251066 MAN2A2 15 C C G 28 IGKV1-5 genome.wustl.edu 36 2 89302534 89302534 + Silent SNP G G T novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 89302534 89302534 IGKV1-5 2 G G T 47 PTEN 5728 genome.wustl.edu 36 10 89701885 89701885 + Missense_Mutation SNP G G T novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 89701885 89701885 PTEN 10 G G T 48 KRIT1 889 genome.wustl.edu 36 7 91681222 91681222 + Missense_Mutation SNP T T C novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 91681222 91681222 KRIT1 7 T T C 64 LOC119358 119358 genome.wustl.edu 36 10 91728509 91728509 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 91728509 91728509 LOC119358 10 G G A 37 TGFBR3 7049 genome.wustl.edu 36 1 91936263 91936263 + Missense_Mutation SNP C C G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 91936263 91936263 TGFBR3 1 C C G 28 CYP2C9 1559 genome.wustl.edu 36 10 96721970 96721970 + Silent SNP G G A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 96721970 96721970 CYP2C9 10 G G A 46 EPHA6 285220 genome.wustl.edu 36 3 98188911 98188911 + Silent SNP A A G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 98188911 98188911 EPHA6 3 A A G 8 SLIT1 6585 genome.wustl.edu 36 10 98814622 98814622 + Missense_Mutation SNP G G C novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 98814622 98814622 SLIT1 10 G G C 48 BHLHB9 80823 genome.wustl.edu 36 X 101891283 101891283 + Missense_Mutation SNP C C G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 101891283 101891283 BHLHB9 23 C C G 30 MMP8 4317 genome.wustl.edu 36 11 102092270 102092270 + Missense_Mutation SNP C C A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 102092270 102092270 MMP8 11 C C A 19 ZNF189 7743 genome.wustl.edu 36 9 103210792 103210792 + Silent SNP A A G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 103210792 103210792 ZNF189 9 A A G 1 NFKB1 4790 genome.wustl.edu 36 4 103678093 103678093 + Silent SNP A A G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 103678093 103678093 NFKB1 4 A A G 14 TAF5 6877 genome.wustl.edu 36 10 105132993 105132993 + Missense_Mutation SNP C C G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 105132993 105132993 TAF5 10 C C G 32 PREP 5550 genome.wustl.edu 36 6 105878338 105878338 + Splice_Site_SNP SNP T T G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 105878338 105878338 PREP 6 T T G 53 FRMPD3 84443 genome.wustl.edu 36 X 106656544 106656544 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 106656544 106656544 FRMPD3 23 G G A 40 COL4A5 1287 genome.wustl.edu 36 X 107826227 107826227 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 107826227 107826227 COL4A5 23 G G A 37 ACACB 32 genome.wustl.edu 36 12 108138838 108138838 + Missense_Mutation SNP C C G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 108138838 108138838 ACACB 12 C C G 17 C1orf103 55791 genome.wustl.edu 36 1 111292268 111292268 + Missense_Mutation SNP G G C novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 111292268 111292268 C1orf103 1 G G C 48 PALM2 114299 genome.wustl.edu 36 9 111745233 111745233 + Missense_Mutation SNP A A G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 111745233 111745233 PALM2 9 A A G 16 SLC9A10 285335 genome.wustl.edu 36 3 113471528 113471528 + Missense_Mutation SNP T T A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 113471528 113471528 SLC9A10 3 T T A 50 CCDC80 151887 genome.wustl.edu 36 3 113831719 113831719 + Missense_Mutation SNP T T G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 113831719 113831719 CCDC80 3 T T G 62 LVRN 206338 genome.wustl.edu 36 5 115326342 115326342 + Silent SNP C C T novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 115326342 115326342 LVRN 5 C C T 30 MARCO 8685 genome.wustl.edu 36 2 119445573 119445573 + Silent SNP C C G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 119445573 119445573 MARCO 2 C C G 27 MAL2 114569 genome.wustl.edu 36 8 120321660 120321660 + Missense_Mutation SNP G G C novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 120321660 120321660 MAL2 8 G G C 46 KTELC1 56983 genome.wustl.edu 36 3 120688369 120688369 + Splice_Site_SNP SNP G G C novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 120688369 120688369 KTELC1 3 G G C 35 C6orf170 221322 genome.wustl.edu 36 6 121443618 121443618 + Nonstop_Mutation SNP A A T novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonstop_Mutation SNP 121443618 121443618 C6orf170 6 A A T 16 KNTC1 9735 genome.wustl.edu 36 12 121618772 121618772 + Missense_Mutation SNP G G T novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 121618772 121618772 KNTC1 12 G G T 47 BRI3BP 140707 genome.wustl.edu 36 12 124063063 124063063 + Missense_Mutation SNP C C A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 124063063 124063063 BRI3BP 12 C C A 28 GAPVD1 26130 genome.wustl.edu 36 9 127123549 127123549 + Missense_Mutation SNP T T G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 127123549 127123549 GAPVD1 9 T T G 56 TSGA13 114960 genome.wustl.edu 36 7 130019032 130019032 + Silent SNP T T G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 130019032 130019032 TSGA13 7 T T G 63 RALGDS 5900 genome.wustl.edu 36 9 134975699 134975699 + Splice_Site_SNP SNP T C C novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 T T C C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 134975699 134975699 RALGDS 9 T C C 55 KY 339855 genome.wustl.edu 36 3 135805662 135805662 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 135805662 135805662 KY 3 G G A 38 EGR1 1958 genome.wustl.edu 36 5 137830996 137830996 + Missense_Mutation SNP G A A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 137830996 137830996 EGR1 5 G A A 38 LRP1B 53353 genome.wustl.edu 36 2 140797959 140797960 + Missense DNP TC TC CT novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 TC TC TC CT TC TC Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense DNP 140797959 140797960 LRP1B 2 TC TC CT 50 LOC441294 441294 genome.wustl.edu 36 7 142980478 142980478 + Missense_Mutation SNP A A C novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 142980478 142980478 LOC441294 7 A A C 1 PLEC 5339 genome.wustl.edu 36 8 145066072 145066072 + Missense_Mutation SNP C C A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 145066072 145066072 PLEC 8 C C A 24 OTUD4 54726 genome.wustl.edu 36 4 146278262 146278262 + Missense_Mutation SNP A A C novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 146278262 146278262 OTUD4 4 A A C 12 FCGR1A 2209 genome.wustl.edu 36 1 148028407 148028407 + Missense_Mutation SNP T T C novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 148028407 148028407 FCGR1A 1 T T C 49 MTMR11 10903 genome.wustl.edu 36 1 148174218 148174218 + Missense_Mutation SNP C C G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 148174218 148174218 MTMR11 1 C C G 28 GIMAP6 474344 genome.wustl.edu 36 7 149955985 149955985 + Missense_Mutation SNP G G T novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 149955985 149955985 GIMAP6 7 G G T 36 FAM50A 9130 genome.wustl.edu 36 X 153328092 153328092 + Missense_Mutation SNP G A A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 153328092 153328092 FAM50A 23 G A A 47 GON4L 54856 genome.wustl.edu 36 1 153993466 153993466 + Silent SNP C C T novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 153993466 153993466 GON4L 1 C C T 25 NAF1 92345 genome.wustl.edu 36 4 164269865 164269865 + Missense_Mutation SNP G G C novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 164269865 164269865 NAF1 4 G G C 45 IRF2 3660 genome.wustl.edu 36 4 185577632 185577632 + Missense_Mutation SNP A A G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 185577632 185577632 IRF2 4 A A G 7 FAT1 2195 genome.wustl.edu 36 4 187747329 187747329 + Missense_Mutation SNP G G T novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 187747329 187747329 FAT1 4 G G T 35 COL6A3 1293 genome.wustl.edu 36 2 237939079 237939079 + Splice_Site_SNP SNP C A A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C A A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 237939079 237939079 COL6A3 2 C A A 18 ZNF518B 85460 genome.wustl.edu 36 4 10053863 10053881 + Frame_Shift_Del DEL GTTGCTTCTATCAAATGCC GTTGCTTCTATCAAATGCC - novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 GTTGCTTCTATCAAATGCC GTTGCTTCTATCAAATGCC GTTGCTTCTATCAAATGCC - GTTGCTTCTATCAAATGCC GTTGCTTCTATCAAATGCC Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 10053863 10053881 ZNF518B 4 GTTGCTTCTATCAAATGCC GTTGCTTCTATCAAATGCC - 36 MGA 23269 genome.wustl.edu 36 15 39828708 39828709 + Frame_Shift_Ins INS - - A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 - - Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Ins INS 39828708 39828709 MGA 15 - - A 48 MAGEE2 139599 genome.wustl.edu 36 X 74920217 74920228 + In_Frame_Del DEL AAGCTCATATTC AAGCTCATATTC - novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 AAGCTCATATTC AAGCTCATATTC AAGCTCATATTC - AAGCTCATATTC AAGCTCATATTC Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU In_Frame_Del DEL 74920217 74920228 MAGEE2 23 AAGCTCATATTC AAGCTCATATTC - 9 LZTS2 84445 genome.wustl.edu 36 10 102753671 102753673 + In_Frame_Del DEL TCC TCC - novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 TCC TCC TCC - TCC TCC Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU In_Frame_Del DEL 102753671 102753673 LZTS2 10 TCC TCC - 58 SLC6A17 388662 genome.wustl.edu 36 1 110539769 110539780 + In_Frame_Del DEL TTCGTCCAGCGC TTCGTCCAGCGC - novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 TTCGTCCAGCGC TTCGTCCAGCGC TTCGTCCAGCGC - TTCGTCCAGCGC TTCGTCCAGCGC Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU In_Frame_Del DEL 110539769 110539780 SLC6A17 1 TTCGTCCAGCGC TTCGTCCAGCGC - 60 RPF2 84154 genome.wustl.edu 36 6 111436015 111436023 + In_Frame_Del DEL CTAAAAAGT CTAAAAAGT - novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 CTAAAAAGT CTAAAAAGT CTAAAAAGT - CTAAAAAGT CTAAAAAGT Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU In_Frame_Del DEL 111436015 111436023 RPF2 6 CTAAAAAGT CTAAAAAGT - 20 UBN2 254048 genome.wustl.edu 36 7 138596723 138596724 + Frame_Shift_Del DEL CA CA - novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 CA CA Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 138596723 138596724 UBN2 7 CA CA - 25 TP53 7157 genome.wustl.edu 36 17 7520032 7520032 + Splice_Site_SNP SNP C C G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C G C C Verified Valid Somatic Phase_III PCR 454_PCR_WGA dbGAP ABI 3730xl WashU Splice_Site_SNP SNP 7520032 7520032 TP53 17 C C G 20 C1orf92 149499 genome.wustl.edu 36 1 155164045 155164045 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 155164045 155164045 C1orf92 1 G G A 45 CALHM1 255022 genome.wustl.edu 36 10 105208155 105208155 + Missense_Mutation SNP A A C Unknown TCGA-10-0930-01 TCGA-10-0930-11 A A A C A A Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 105208155 105208155 CALHM1 10 A A C 6 CREB3L1 90993 genome.wustl.edu 36 11 46294513 46294513 + Splice_Site_SNP SNP G G T novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 46294513 46294513 CREB3L1 11 G G T 44 ENSG00000180909 genome.wustl.edu 36 11 6130098 6130098 + Silent SNP G A A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 6130098 6130098 ENSG00000180909 11 G A A 40 SLC22A11 55867 genome.wustl.edu 36 11 64080374 64080374 + Silent SNP C C T Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C T C C Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 64080374 64080374 SLC22A11 11 C C T 17 SH2B3 10019 genome.wustl.edu 36 12 110369574 110369574 + Missense_Mutation SNP C C G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 110369574 110369574 SH2B3 12 C C G 30 PPFIA2 8499 genome.wustl.edu 36 12 80271202 80271202 + Silent SNP T T A novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 80271202 80271202 PPFIA2 12 T T A 54 TPTE2 93492 genome.wustl.edu 36 13 18954660 18954660 + Missense_Mutation SNP T T G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 18954660 18954660 TPTE2 13 T T G 56 RFXAP 5994 genome.wustl.edu 36 13 36292092 36292092 + Nonsense_Mutation SNP G G T Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G T G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 36292092 36292092 RFXAP 13 G G T 37 CLEC14A 161198 genome.wustl.edu 36 14 37793534 37793534 + Missense_Mutation SNP T T C novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 37793534 37793534 CLEC14A 14 T T C 54 SALL1 6299 genome.wustl.edu 36 16 49731904 49731904 + Missense_Mutation SNP G G T Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G T G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 49731904 49731904 SALL1 16 G G T 43 KIF18B 146909 genome.wustl.edu 36 17 40366915 40366915 + Missense_Mutation SNP T C C novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 T T C C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 40366915 40366915 KIF18B 17 T C C 59 PLCD4 84812 genome.wustl.edu 36 2 219205133 219205133 + Missense_Mutation SNP A A G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 219205133 219205133 PLCD4 2 A A G 9 MLPH 79083 genome.wustl.edu 36 2 238113861 238113861 + Missense_Mutation SNP G G C Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G C G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 238113861 238113861 MLPH 2 G G C 35 PARP9 83666 genome.wustl.edu 36 3 123759921 123759921 + Silent SNP G G T Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G T G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 123759921 123759921 PARP9 3 G G T 33 MED12L 116931 genome.wustl.edu 36 3 152550663 152550663 + Missense_Mutation SNP A A G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 152550663 152550663 MED12L 3 A A G 9 GFRA3 2676 genome.wustl.edu 36 5 137621427 137621427 + Silent SNP G G C Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G C G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 137621427 137621427 GFRA3 5 G G C 33 RUFY1 80230 genome.wustl.edu 36 5 178949231 178949231 + Missense_Mutation SNP G G C novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 178949231 178949231 RUFY1 5 G G C 33 RREB1 6239 genome.wustl.edu 36 6 7176750 7176750 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7176750 7176750 RREB1 6 C C T 32 GNB2 2783 genome.wustl.edu 36 7 100113090 100113090 + Missense_Mutation SNP A A G Unknown TCGA-10-0930-01 TCGA-10-0930-11 A A A G A A Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 100113090 100113090 GNB2 7 A A G 4 CBX3 11335 genome.wustl.edu 36 7 26209145 26209145 + Missense_Mutation SNP T T G novel Unknown TCGA-10-0930-01 TCGA-10-0930-11 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 26209145 26209145 CBX3 7 T T G 51 ALPK2 115701 genome.wustl.edu 36 18 54356376 54356376 + Missense_Mutation SNP C C G Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C G C C Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 54356376 54356376 ALPK2 18 C C G 32 ANO8 57719 genome.wustl.edu 36 19 17299567 17299567 + Silent SNP G G A Unknown TCGA-10-0930-01 TCGA-10-0930-11 G G G A G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 17299567 17299567 ANO8 19 G G A 40 APCDD1L 164284 genome.wustl.edu 36 20 56479111 56479111 + Missense_Mutation SNP T T C Unknown TCGA-10-0930-01 TCGA-10-0930-11 T T T C T T Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 56479111 56479111 APCDD1L 20 T T C 50 SGSM1 129049 genome.wustl.edu 36 22 23573735 23573735 + Nonsense_Mutation SNP C C T Unknown TCGA-10-0930-01 TCGA-10-0930-11 C C C T C C Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 23573735 23573735 SGSM1 22 C C T 25