Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ADAMTS4	9507	hgsc.bcm.edu	36	1	159430448	159430448	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	159430448	159430448	ADAMTS4	1	C	C	G	32
ANO6	196527	hgsc.bcm.edu	36	12	44096836	44096836	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	44096836	44096836	ANO6	12	G	G	C	33
APLP2	334	hgsc.bcm.edu	36	11	129498784	129498784	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	129498784	129498784	APLP2	11	C	C	G	32
ARRDC3	57561	hgsc.bcm.edu	36	5	90707095	90707095	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	90707095	90707095	ARRDC3	5	C	C	G	26
ARSG	22901	hgsc.bcm.edu	36	17	63892821	63892821	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	63892821	63892821	ARSG	17	C	C	G	19
CCDC67	159989	hgsc.bcm.edu	36	11	92744058	92744058	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	92744058	92744058	CCDC67	11	C	C	T	32
CCNT1	904	hgsc.bcm.edu	36	12	47379887	47379887	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	47379887	47379887	CCNT1	12	A	A	C	1
CD200R1	131450	hgsc.bcm.edu	36	3	114130471	114130471	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	114130471	114130471	CD200R1	3	G	G	A	46
CPAMD8	27151	hgsc.bcm.edu	36	19	16993877	16993877	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	16993877	16993877	CPAMD8	19	C	C	G	24
CYTH1	9267	hgsc.bcm.edu	36	17	74183809	74183809	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	74183809	74183809	CYTH1	17	C	C	T	27
DCLK1	9201	hgsc.bcm.edu	36	13	35584117	35584117	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	35584117	35584117	DCLK1	13	C	C	T	25
DDX59	83479	hgsc.bcm.edu	36	1	198884312	198884312	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	198884312	198884312	DDX59	1	G	G	C	36
DENND4A	10260	hgsc.bcm.edu	36	15	63797187	63797187	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	63797187	63797187	DENND4A	15	G	G	C	33
DNAH7	56171	hgsc.bcm.edu	36	2	196445387	196445387	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	196445387	196445387	DNAH7	2	G	G	T	46
DST	667	hgsc.bcm.edu	36	6	56533084	56533084	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	56533084	56533084	DST	6	C	C	-	26
EZR	7430	hgsc.bcm.edu	36	6	159126601	159126601	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	159126601	159126601	EZR	6	C	C	A	17
FAM24A	118670	hgsc.bcm.edu	36	10	124662460	124662460	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	124662460	124662460	FAM24A	10	A	A	T	10
FBLN1	2192	hgsc.bcm.edu	36	22	44316768	44316782	+	In_Frame_Del	DEL	GTTTCCGCTGCGAAT	GTTTCCGCTGCGAAT	-	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	GTTTCCGCTGCGAAT	GTTTCCGCTGCGAAT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Del	DEL	44316768	44316782	FBLN1	22	GTTTCCGCTGCGAAT	GTTTCCGCTGCGAAT	-	36
FNBP1	23048	hgsc.bcm.edu	36	9	131698028	131698028	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	131698028	131698028	FNBP1	9	C	C	T	31
GNAT1	2779	hgsc.bcm.edu	36	3	50207281	50207281	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	50207281	50207281	GNAT1	3	G	G	C	33
HDAC4	9759	hgsc.bcm.edu	36	2	239689521	239689521	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	239689521	239689521	HDAC4	2	G	G	A	38
HOOK1	51361	hgsc.bcm.edu	36	1	60096727	60096727	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	60096727	60096727	HOOK1	1	G	G	A	45
HPS3	84343	hgsc.bcm.edu	36	3	150368429	150368429	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	150368429	150368429	HPS3	3	G	G	A	33
HSPA1L	3305	hgsc.bcm.edu	36	6	31886183	31886183	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	31886183	31886183	HSPA1L	6	C	C	G	30
HYDIN	54768	hgsc.bcm.edu	36	16	69556200	69556200	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	69556200	69556200	HYDIN	16	T	T	A	64
IL1RAPL1	11141	hgsc.bcm.edu	36	X	29845546	29845546	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	29845546	29845546	IL1RAPL1	23	G	G	T	39
NYNRIN	57523	hgsc.bcm.edu	36	14	23949056	23949056	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	23949056	23949056	NYNRIN	14	T	T	G	64
MAMDC4	158056	hgsc.bcm.edu	36	9	138874247	138874247	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	138874247	138874247	MAMDC4	9	A	A	G	10
MUC19	283463	hgsc.bcm.edu	36	12	39108069	39108069	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	39108069	39108069	MUC19	12	G	G	A	41
NOD1	10392	hgsc.bcm.edu	36	7	30454487	30454487	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	30454487	30454487	NOD1	7	T	T	G	56
NPAS3	64067	hgsc.bcm.edu	36	14	32754188	32754188	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	32754188	32754188	NPAS3	14	C	C	T	23
PABPC3	5042	hgsc.bcm.edu	36	13	24569668	24569668	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	24569668	24569668	PABPC3	13	G	G	C	34
PDCD11	22984	hgsc.bcm.edu	36	10	105190044	105190044	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	105190044	105190044	PDCD11	10	C	C	T	21
PITPNM3	83394	hgsc.bcm.edu	36	17	6322056	6322056	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	6322056	6322056	PITPNM3	17	G	G	A	42
PPAP2A	8611	hgsc.bcm.edu	36	5	54757623	54757623	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	54757623	54757623	PPAP2A	5	A	A	C	3
PRB1	5542	hgsc.bcm.edu	36	12	11397670	11397670	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	11397670	11397670	PRB1	12	A	A	G	9
RAPGEF6	51735	hgsc.bcm.edu	36	5	130794642	130794642	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	130794642	130794642	RAPGEF6	5	T	T	G	64
RARS2	57038	hgsc.bcm.edu	36	6	88291076	88291076	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	88291076	88291076	RARS2	6	C	C	T	17
RELN	5649	hgsc.bcm.edu	36	7	102900523	102900523	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	102900523	102900523	RELN	7	C	C	T	32
SCN5A	6331	hgsc.bcm.edu	36	3	38626341	38626341	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	38626341	38626341	SCN5A	3	G	G	T	46
SCN5A	6331	hgsc.bcm.edu	36	3	38626347	38626347	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	38626347	38626347	SCN5A	3	G	G	T	45
ZFYVE28	57732	hgsc.bcm.edu	36	4	2244812	2244812	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	2244812	2244812	ZFYVE28	4	C	C	A	17
ZMAT5	55954	hgsc.bcm.edu	36	22	28464344	28464344	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0928-01	TCGA-10-0928-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	28464344	28464344	ZMAT5	22	G	G	A	38