Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ARID1A	8289	hgsc.bcm.edu	36	1	26962198	26962198	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0927-01	TCGA-10-0927-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	26962198	26962198	ARID1A	1	G	G	T	43
BRPF1	7862	hgsc.bcm.edu	36	3	9756506	9756506	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0927-01	TCGA-10-0927-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	9756506	9756506	BRPF1	3	G	G	C	43
CHD6	84181	hgsc.bcm.edu	36	20	39545470	39545470	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0927-01	TCGA-10-0927-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	39545470	39545470	CHD6	20	C	C	T	29
DYX1C1	161582	hgsc.bcm.edu	36	15	53546534	53546534	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-10-0927-01	TCGA-10-0927-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	53546534	53546534	DYX1C1	15	T	T	-	52
FAM124B	79843	hgsc.bcm.edu	36	2	224974492	224974492	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0927-01	TCGA-10-0927-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	224974492	224974492	FAM124B	2	C	C	A	30
FASTKD2	22868	hgsc.bcm.edu	36	2	207360933	207360933	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0927-01	TCGA-10-0927-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	207360933	207360933	FASTKD2	2	A	A	G	8
GLT8D2	83468	hgsc.bcm.edu	36	12	102921214	102921214	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0927-01	TCGA-10-0927-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	102921214	102921214	GLT8D2	12	T	T	G	50
GRM1	2911	hgsc.bcm.edu	36	6	146392385	146392385	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-10-0927-01	TCGA-10-0927-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	146392385	146392385	GRM1	6	T	T	C	64
GTF2IRD1	9569	hgsc.bcm.edu	36	7	73582041	73582041	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0927-01	TCGA-10-0927-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	73582041	73582041	GTF2IRD1	7	C	C	T	23
MADD	8567	hgsc.bcm.edu	36	11	47307260	47307260	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0927-01	TCGA-10-0927-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	47307260	47307260	MADD	11	C	C	T	23
MEN1	4221	hgsc.bcm.edu	36	11	64329795	64329795	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0927-01	TCGA-10-0927-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	64329795	64329795	MEN1	11	T	T	C	54
NANS	54187	hgsc.bcm.edu	36	9	99885039	99885039	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-10-0927-01	TCGA-10-0927-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	99885039	99885039	NANS	9	G	G	-	35
OLR1	4973	hgsc.bcm.edu	36	12	10210806	10210806	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0927-01	TCGA-10-0927-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	10210806	10210806	OLR1	12	G	G	A	35
PGBD1	84547	hgsc.bcm.edu	36	6	28377944	28377944	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0927-01	TCGA-10-0927-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	28377944	28377944	PGBD1	6	C	C	T	17
PPIL2	23759	hgsc.bcm.edu	36	22	20366752	20366752	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0927-01	TCGA-10-0927-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	20366752	20366752	PPIL2	22	C	C	T	21
PRKCQ	5588	hgsc.bcm.edu	36	10	6573670	6573670	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-10-0927-01	TCGA-10-0927-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	6573670	6573670	PRKCQ	10	C	C	A	26
RREB1	6239	hgsc.bcm.edu	36	6	7171815	7171815	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0927-01	TCGA-10-0927-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	7171815	7171815	RREB1	6	C	C	A	24
SAMD9L	219285	hgsc.bcm.edu	36	7	92603061	92603061	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0927-01	TCGA-10-0927-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	92603061	92603061	SAMD9L	7	C	C	T	30
SQRDL	58472	hgsc.bcm.edu	36	15	43741448	43741448	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0927-01	TCGA-10-0927-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	43741448	43741448	SQRDL	15	C	C	T	17
TIGD6	81789	hgsc.bcm.edu	36	5	149355073	149355073	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-10-0927-01	TCGA-10-0927-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	149355073	149355073	TIGD6	5	T	T	C	56
TIMD4	91937	hgsc.bcm.edu	36	5	156285901	156285901	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0927-01	TCGA-10-0927-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	156285901	156285901	TIMD4	5	G	G	T	46
TTC29	83894	hgsc.bcm.edu	36	4	147944251	147944251	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-10-0927-01	TCGA-10-0927-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	147944251	147944251	TTC29	4	C	C	-	28
UBR5	51366	hgsc.bcm.edu	36	8	103424040	103424040	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0927-01	TCGA-10-0927-11	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	103424040	103424040	UBR5	8	T	T	G	62
USH2A	7399	hgsc.bcm.edu	36	1	214128690	214128690	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-10-0927-01	TCGA-10-0927-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	214128690	214128690	USH2A	1	T	T	A	49
WDR60	55112	hgsc.bcm.edu	36	7	158397111	158397111	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0927-01	TCGA-10-0927-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	158397111	158397111	WDR60	7	G	G	C	47
XIRP2	129446	hgsc.bcm.edu	36	2	167700789	167700789	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0927-01	TCGA-10-0927-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	167700789	167700789	XIRP2	2	C	C	A	24
ZBTB16	7704	hgsc.bcm.edu	36	11	113439427	113439427	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0927-01	TCGA-10-0927-11	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Silent	SNP	113439427	113439427	ZBTB16	11	C	C	T	25
ZNF155	7711	hgsc.bcm.edu	36	19	49193296	49193296	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0927-01	TCGA-10-0927-11	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	49193296	49193296	ZNF155	19	C	C	A	18