Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ABCA12	26154	hgsc.bcm.edu	36	2	215622593	215622593	+	Splice_Site_SNP	SNP	A	A	T	novel	Unknown	TCGA-09-1666-01	TCGA-09-1666-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	215622593	215622593	ABCA12	2	A	A	T	6
APEH	327	hgsc.bcm.edu	36	3	49687675	49687675	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-1666-01	TCGA-09-1666-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	49687675	49687675	APEH	3	C	C	A	18
ATG3	64422	hgsc.bcm.edu	36	3	113763031	113763031	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-1666-01	TCGA-09-1666-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	113763031	113763031	ATG3	3	G	G	A	46
BRWD3	254065	hgsc.bcm.edu	36	X	79875622	79875622	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-1666-01	TCGA-09-1666-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	79875622	79875622	BRWD3	23	G	G	A	48
C14orf118	55668	hgsc.bcm.edu	36	14	75708025	75708025	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-1666-01	TCGA-09-1666-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	75708025	75708025	C14orf118	14	G	G	C	45
C3orf20	84077	hgsc.bcm.edu	36	3	14743469	14743469	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-1666-01	TCGA-09-1666-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	14743469	14743469	C3orf20	3	G	G	T	42
CD3E	916	hgsc.bcm.edu	36	11	117691453	117691453	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-1666-01	TCGA-09-1666-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	117691453	117691453	CD3E	11	C	C	G	29
DDIT3	1649	hgsc.bcm.edu	36	12	56197027	56197027	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-1666-01	TCGA-09-1666-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	56197027	56197027	DDIT3	12	C	C	T	22
DNMT1	1786	hgsc.bcm.edu	36	19	10109608	10109608	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-1666-01	TCGA-09-1666-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	10109608	10109608	DNMT1	19	G	G	A	37
GABRE	2564	hgsc.bcm.edu	36	X	150880417	150880417	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-1666-01	TCGA-09-1666-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	150880417	150880417	GABRE	23	A	A	G	11
ITSN1	6453	hgsc.bcm.edu	36	21	34117681	34117682	+	Frame_Shift_Ins	INS	-	-	A	novel	Unknown	TCGA-09-1666-01	TCGA-09-1666-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	34117681	34117682	ITSN1	21	-	-	A	61
OCA2	4948	hgsc.bcm.edu	36	15	25870554	25870554	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-1666-01	TCGA-09-1666-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	25870554	25870554	OCA2	15	G	G	C	37
OLFM1	10439	hgsc.bcm.edu	36	9	137151792	137151792	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-1666-01	TCGA-09-1666-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	137151792	137151792	OLFM1	9	C	C	A	21
OR2D2	120776	hgsc.bcm.edu	36	11	6869840	6869840	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-09-1666-01	TCGA-09-1666-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	6869840	6869840	OR2D2	11	A	A	C	7
PCDHGC5	56097	hgsc.bcm.edu	36	5	140850510	140850510	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-1666-01	TCGA-09-1666-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	140850510	140850510	PCDHGC5	5	G	G	A	48
PLB1	151056	hgsc.bcm.edu	36	2	28702847	28702847	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-1666-01	TCGA-09-1666-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	28702847	28702847	PLB1	2	G	G	T	44
RPS18	6222	hgsc.bcm.edu	36	6	33348408	33348408	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-1666-01	TCGA-09-1666-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	33348408	33348408	RPS18	6	A	A	G	7
RYR1	6261	hgsc.bcm.edu	36	19	43672661	43672661	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1666-01	TCGA-09-1666-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	43672661	43672661	RYR1	19	C	C	T	27
SILV	6490	hgsc.bcm.edu	36	12	54641463	54641463	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-1666-01	TCGA-09-1666-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	54641463	54641463	SILV	12	G	G	C	46
TNS1	7145	hgsc.bcm.edu	36	2	218420723	218420723	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-1666-01	TCGA-09-1666-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	218420723	218420723	TNS1	2	T	T	C	49
TP53	7157	hgsc.bcm.edu	36	17	7519280	7519280	+	Splice_Site_SNP	SNP	C	C	A	novel	Unknown	TCGA-09-1666-01	TCGA-09-1666-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	7519280	7519280	TP53	17	C	C	A	20
TSC1	7248	hgsc.bcm.edu	36	9	134761809	134761809	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-1666-01	TCGA-09-1666-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	134761809	134761809	TSC1	9	G	G	T	38
UQCRB	7381	hgsc.bcm.edu	36	8	97316918	97316918	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-1666-01	TCGA-09-1666-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	97316918	97316918	UQCRB	8	G	G	C	42