Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ABCG8	64241	hgsc.bcm.edu	36	2	43926872	43926872	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-1662-01	TCGA-09-1662-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	43926872	43926872	ABCG8	2	C	C	T	26
C18orf34	374864	hgsc.bcm.edu	36	18	29157491	29157491	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-1662-01	TCGA-09-1662-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	29157491	29157491	C18orf34	18	C	C	A	24
C3AR1	719	hgsc.bcm.edu	36	12	8103788	8103788	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-1662-01	TCGA-09-1662-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	8103788	8103788	C3AR1	12	C	C	T	20
CACNA1D	776	hgsc.bcm.edu	36	3	53785084	53785084	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-1662-01	TCGA-09-1662-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	53785084	53785084	CACNA1D	3	T	T	G	50
CHD2	1106	hgsc.bcm.edu	36	15	91300692	91300692	+	Splice_Site_SNP	SNP	G	G	C	novel	Unknown	TCGA-09-1662-01	TCGA-09-1662-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	91300692	91300692	CHD2	15	G	G	C	33
CMTM1	113540	hgsc.bcm.edu	36	16	65161432	65161432	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-09-1662-01	TCGA-09-1662-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	65161432	65161432	CMTM1	16	T	T	G	64
CYP1A2	1544	hgsc.bcm.edu	36	15	72829288	72829288	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-1662-01	TCGA-09-1662-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	72829288	72829288	CYP1A2	15	G	G	A	42
ENPP2	5168	hgsc.bcm.edu	36	8	120665457	120665457	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1662-01	TCGA-09-1662-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	120665457	120665457	ENPP2	8	C	C	T	17
EPB41L5	57669	hgsc.bcm.edu	36	2	120493254	120493254	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-1662-01	TCGA-09-1662-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	120493254	120493254	EPB41L5	2	A	A	G	8
EVPL	2125	hgsc.bcm.edu	36	17	71515272	71515273	+	Frame_Shift_Ins	INS	-	-	CC	novel	Unknown	TCGA-09-1662-01	TCGA-09-1662-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	71515272	71515273	EVPL	17	-	-	CC	58
GTF2H4	2968	hgsc.bcm.edu	36	6	30987899	30987899	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-1662-01	TCGA-09-1662-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	30987899	30987899	GTF2H4	6	A	A	G	6
HEATR1	55127	hgsc.bcm.edu	36	1	234817932	234817932	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-1662-01	TCGA-09-1662-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	234817932	234817932	HEATR1	1	A	A	T	2
IL1F10	84639	hgsc.bcm.edu	36	2	113548448	113548448	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-1662-01	TCGA-09-1662-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	113548448	113548448	IL1F10	2	A	A	T	10
KRIT1	889	hgsc.bcm.edu	36	7	91703779	91703779	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-1662-01	TCGA-09-1662-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	91703779	91703779	KRIT1	7	G	G	T	48
LRP2	4036	hgsc.bcm.edu	36	2	169693767	169693767	+	Splice_Site_SNP	SNP	A	A	T	novel	Unknown	TCGA-09-1662-01	TCGA-09-1662-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	169693767	169693767	LRP2	2	A	A	T	14
LRRC7	57554	hgsc.bcm.edu	36	1	70274878	70274878	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-1662-01	TCGA-09-1662-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	70274878	70274878	LRRC7	1	T	T	G	52
MAP3K4	4216	hgsc.bcm.edu	36	6	161390741	161390741	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-1662-01	TCGA-09-1662-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	161390741	161390741	MAP3K4	6	G	G	T	37
MKI67	4288	hgsc.bcm.edu	36	10	129793291	129793291	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-1662-01	TCGA-09-1662-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	129793291	129793291	MKI67	10	G	G	T	48
MTDH	92140	hgsc.bcm.edu	36	8	98800510	98800510	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-1662-01	TCGA-09-1662-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	98800510	98800510	MTDH	8	A	A	G	2
OR8D1	283159	hgsc.bcm.edu	36	11	123685530	123685530	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-1662-01	TCGA-09-1662-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	123685530	123685530	OR8D1	11	G	G	C	35
PAPPA	5069	hgsc.bcm.edu	36	9	117990026	117990026	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-1662-01	TCGA-09-1662-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	117990026	117990026	PAPPA	9	C	C	A	19
PGF	5228	hgsc.bcm.edu	36	14	74479185	74479185	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1662-01	TCGA-09-1662-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	74479185	74479185	PGF	14	C	C	T	23
POP7	10248	hgsc.bcm.edu	36	7	100142479	100142479	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-1662-01	TCGA-09-1662-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	100142479	100142479	POP7	7	G	G	A	46
PRKD3	23683	hgsc.bcm.edu	36	2	37334916	37334916	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-1662-01	TCGA-09-1662-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	37334916	37334916	PRKD3	2	G	G	T	33
RXFP2	122042	hgsc.bcm.edu	36	13	31233888	31233888	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-1662-01	TCGA-09-1662-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	31233888	31233888	RXFP2	13	T	T	G	64
S100A10	6281	hgsc.bcm.edu	36	1	150222273	150222273	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1662-01	TCGA-09-1662-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	150222273	150222273	S100A10	1	C	C	T	30
SACM1L	22908	hgsc.bcm.edu	36	3	45726053	45726053	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-09-1662-01	TCGA-09-1662-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	45726053	45726053	SACM1L	3	T	T	C	64
SEC14L1	6397	hgsc.bcm.edu	36	17	72702455	72702455	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-09-1662-01	TCGA-09-1662-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	72702455	72702455	SEC14L1	17	A	A	G	8
SERPINA12	145264	hgsc.bcm.edu	36	14	94034154	94034154	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-1662-01	TCGA-09-1662-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	94034154	94034154	SERPINA12	14	G	G	T	33
SLC2A8	29988	hgsc.bcm.edu	36	9	129202018	129202018	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-09-1662-01	TCGA-09-1662-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	129202018	129202018	SLC2A8	9	C	C	G	23
SPANXN3	139067	hgsc.bcm.edu	36	X	142424465	142424465	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-1662-01	TCGA-09-1662-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	142424465	142424465	SPANXN3	23	A	A	T	3
TACC2	10579	hgsc.bcm.edu	36	10	123978986	123978986	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1662-01	TCGA-09-1662-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	123978986	123978986	TACC2	10	C	C	T	20
TP53	7157	hgsc.bcm.edu	36	17	7519128	7519128	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1662-01	TCGA-09-1662-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	7519128	7519128	TP53	17	C	C	T	25
TYRO3	7301	hgsc.bcm.edu	36	15	39644530	39644530	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1662-01	TCGA-09-1662-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	39644530	39644530	TYRO3	15	C	C	T	22
ZC3HAV1	56829	hgsc.bcm.edu	36	7	138383002	138383002	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-1662-01	TCGA-09-1662-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	138383002	138383002	ZC3HAV1	7	G	G	A	48