Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context LPCAT1 79888 genome.wustl.edu 36 5 1532751 1532751 + Silent SNP G G A novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 1532751 1532751 LPCAT1 5 G G A 44 OR51G1 79324 genome.wustl.edu 36 11 4901325 4901325 + Missense_Mutation SNP A A G novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 4901325 4901325 OR51G1 11 A A G 14 FERMT1 55612 genome.wustl.edu 36 20 6005909 6005909 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 6005909 6005909 FERMT1 20 C C T 23 TP53 7157 genome.wustl.edu 36 17 7519119 7519119 + Missense_Mutation SNP T T C novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7519119 7519119 TP53 17 T T C 51 KCNAB3 9196 genome.wustl.edu 36 17 7768240 7768240 + Silent SNP C C T novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 7768240 7768240 KCNAB3 17 C C T 17 TAF1B 9014 genome.wustl.edu 36 2 9991399 9991399 + Missense_Mutation SNP T T A novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 9991399 9991399 TAF1B 2 T T A 52 LOC729602 729602 genome.wustl.edu 36 18 11619696 11619696 + Silent SNP C C T novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 11619696 11619696 LOC729602 18 C C T 19 MAST1 22983 genome.wustl.edu 36 19 12830432 12830432 + Missense_Mutation SNP G G C novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 12830432 12830432 MAST1 19 G G C 33 DLC1 10395 genome.wustl.edu 36 8 13295574 13295574 + Splice_Site_SNP SNP C C T novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 13295574 13295574 DLC1 8 C C T 24 ENSG00000184624 genome.wustl.edu 36 18 15261461 15261461 + Silent SNP T T C novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 15261461 15261461 ENSG00000184624 18 T T C 49 C18orf8 29919 genome.wustl.edu 36 18 19354206 19354206 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 19354206 19354206 C18orf8 18 G G A 39 CYTSB 92521 genome.wustl.edu 36 17 20048888 20048888 + Missense_Mutation SNP T T C novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 20048888 20048888 CYTSB 17 T T C 50 TMEM159 57146 genome.wustl.edu 36 16 21098357 21098357 + Silent SNP C C T novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 21098357 21098357 TMEM159 16 C C T 31 ZNF493 284443 genome.wustl.edu 36 19 21379800 21379800 + Missense_Mutation SNP A A G novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 21379800 21379800 ZNF493 19 A A G 15 TRA@ 6955 genome.wustl.edu 36 14 22001981 22001981 + Missense_Mutation SNP A A C novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 22001981 22001981 TRA@ 14 A A C 7 RNF160 26046 genome.wustl.edu 36 21 29225362 29225362 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 29225362 29225362 RNF160 21 G G T 47 NR0B1 190 genome.wustl.edu 36 X 30236262 30236262 + Silent SNP G G A novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 30236262 30236262 NR0B1 23 G G A 44 QSER1 79832 genome.wustl.edu 36 11 32954531 32954531 + Missense_Mutation SNP T T C novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 32954531 32954531 QSER1 11 T T C 51 BBS9 27241 genome.wustl.edu 36 7 33364087 33364087 + Missense_Mutation SNP A A G novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 33364087 33364087 BBS9 7 A A G 16 ANLN 54443 genome.wustl.edu 36 7 36433083 36433083 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 36433083 36433083 ANLN 7 G G A 37 TSHZ3 57616 genome.wustl.edu 36 19 36461918 36461918 + Silent SNP G G A novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 36461918 36461918 TSHZ3 19 G G A 33 PTPRT 11122 genome.wustl.edu 36 20 40160598 40160598 + Silent SNP C C T novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 40160598 40160598 PTPRT 20 C C T 28 IFT52 51098 genome.wustl.edu 36 20 41704678 41704678 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 41704678 41704678 IFT52 20 G G T 35 COL6A1 1291 genome.wustl.edu 36 21 46246965 46246965 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 46246965 46246965 COL6A1 21 C C G 23 HMGCR 3156 genome.wustl.edu 36 5 74682418 74682418 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 74682418 74682418 HMGCR 5 C C G 30 PPBP 5473 genome.wustl.edu 36 4 75072567 75072567 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 75072567 75072567 PPBP 4 G G T 48 DLG2 1740 genome.wustl.edu 36 11 82860373 82860373 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 82860373 82860373 DLG2 11 C C T 23 LRRIQ1 84125 genome.wustl.edu 36 12 84042150 84042150 + Silent SNP T T C novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 84042150 84042150 LRRIQ1 12 T T C 54 GRID2 2895 genome.wustl.edu 36 4 94225441 94225441 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 94225441 94225441 GRID2 4 G G T 45 HAL 3034 genome.wustl.edu 36 12 94894370 94894370 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 94894370 94894370 HAL 12 C C G 31 SNRNP200 23020 genome.wustl.edu 36 2 96316472 96316472 + Missense_Mutation SNP T T C novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 96316472 96316472 SNRNP200 2 T T C 56 ENSG00000211954 0 genome.wustl.edu 36 14 105876484 105876484 + Missense_Mutation SNP T T C novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 105876484 105876484 ENSG00000211954 14 T T C 57 C10orf79 80217 genome.wustl.edu 36 10 105917365 105917365 + Missense_Mutation SNP G G C novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 105917365 105917365 C10orf79 10 G G C 36 SIDT1 54847 genome.wustl.edu 36 3 114812567 114812567 + Silent SNP C C T novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 114812567 114812567 SIDT1 3 C C T 31 GLI2 2736 genome.wustl.edu 36 2 121401446 121401446 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 121401446 121401446 GLI2 2 C C T 23 CRTAM 56253 genome.wustl.edu 36 11 122231688 122231688 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 122231688 122231688 CRTAM 11 G G T 42 LAMA2 3908 genome.wustl.edu 36 6 129844113 129844113 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 129844113 129844113 LAMA2 6 G G A 36 L3MBTL3 84456 genome.wustl.edu 36 6 130418077 130418077 + Silent SNP G G A novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 130418077 130418077 L3MBTL3 6 G G A 39 PCDH1 5097 genome.wustl.edu 36 5 141224972 141224972 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 141224972 141224972 PCDH1 5 G G A 39 MED12L 116931 genome.wustl.edu 36 3 152560983 152560983 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 152560983 152560983 MED12L 3 C C T 22 HK3 3101 genome.wustl.edu 36 5 176243669 176243669 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 176243669 176243669 HK3 5 G G A 38 GPR158 57512 genome.wustl.edu 36 10 25927883 25927883 + Missense_Mutation SNP C C T Unknown TCGA-04-1346-01 TCGA-04-1346-11 C C C T C C Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 25927883 25927883 GPR158 10 C C T 31 SLIT1 6585 genome.wustl.edu 36 10 98792711 98792711 + Missense_Mutation SNP G G C Unknown TCGA-04-1346-01 TCGA-04-1346-11 G G G C G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 98792711 98792711 SLIT1 10 G G C 43 FSHB 2488 genome.wustl.edu 36 11 30211794 30211794 + Silent SNP T T C novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 30211794 30211794 FSHB 11 T T C 51 CREB3L1 90993 genome.wustl.edu 36 11 46289268 46289268 + Silent SNP G G A Unknown TCGA-04-1346-01 TCGA-04-1346-11 G G G A G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 46289268 46289268 CREB3L1 11 G G A 38 GRB7 2886 genome.wustl.edu 36 17 35156647 35156647 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 35156647 35156647 GRB7 17 C C T 27 ITIH3 3699 genome.wustl.edu 36 3 52808870 52808870 + Missense_Mutation SNP T T C Unknown TCGA-04-1346-01 TCGA-04-1346-11 T T T C T T Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 52808870 52808870 ITIH3 3 T T C 50 LRRC16A 55604 genome.wustl.edu 36 6 25714415 25714415 + Missense_Mutation SNP C C T Unknown TCGA-04-1346-01 TCGA-04-1346-11 C C C T C C Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 25714415 25714415 LRRC16A 6 C C T 30 DBH 1621 genome.wustl.edu 36 9 135497350 135497350 + Silent SNP G G A novel Unknown TCGA-04-1346-01 TCGA-04-1346-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 135497350 135497350 DBH 9 G G A 40 NOTCH3 4854 genome.wustl.edu 36 19 15159004 15159004 + Silent SNP G G A Unknown TCGA-04-1346-01 TCGA-04-1346-11 G G G A G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 15159004 15159004 NOTCH3 19 G G A 40 APLP1 333 genome.wustl.edu 36 19 41061889 41061889 + Missense_Mutation SNP T T A Unknown TCGA-04-1346-01 TCGA-04-1346-11 T T T A T T Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 41061889 41061889 APLP1 19 T T A 54