Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
A2M	2	hgsc.bcm.edu	36	12	9121687	9121687	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	9121687	9121687	A2M	12	T	T	G	56
A2M	2	hgsc.bcm.edu	36	12	9156049	9156049	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	9156049	9156049	A2M	12	A	A	G	8
ABCA9	10350	hgsc.bcm.edu	36	17	64524034	64524034	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	64524034	64524034	ABCA9	17	A	A	C	13
ACTR8	93973	hgsc.bcm.edu	36	3	53886374	53886374	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	53886374	53886374	ACTR8	3	A	A	T	7
ALB	213	hgsc.bcm.edu	36	4	74498093	74498093	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	74498093	74498093	ALB	4	C	C	T	20
ALDH2	217	hgsc.bcm.edu	36	12	110714309	110714310	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	110714309	110714310	ALDH2	12	-	-	G	55
AMPD2	271	hgsc.bcm.edu	36	1	109970497	109970497	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	109970497	109970497	AMPD2	1	C	C	A	18
ANXA2	302	hgsc.bcm.edu	36	15	58461889	58461890	+	Frame_Shift_Ins	INS	-	-	TATA	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	58461889	58461890	ANXA2	15	-	-	TATA	36
APC	324	hgsc.bcm.edu	36	5	112203047	112203047	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	112203047	112203047	APC	5	A	A	G	9
ARMC4	55130	hgsc.bcm.edu	36	10	28141527	28141527	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	28141527	28141527	ARMC4	10	C	C	A	30
ATP1A2	477	hgsc.bcm.edu	36	1	158371025	158371025	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	158371025	158371025	ATP1A2	1	T	T	C	58
ATP6V1C2	245973	hgsc.bcm.edu	36	2	10821976	10821976	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	10821976	10821976	ATP6V1C2	2	G	G	C	40
ATP8B1	5205	hgsc.bcm.edu	36	18	53472236	53472236	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	53472236	53472236	ATP8B1	18	C	C	A	22
BAZ2B	29994	hgsc.bcm.edu	36	2	160003066	160003066	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	160003066	160003066	BAZ2B	2	G	G	T	47
BIRC2	329	hgsc.bcm.edu	36	11	101726122	101726122	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	101726122	101726122	BIRC2	11	C	C	T	28
BNC1	646	hgsc.bcm.edu	36	15	81723828	81723828	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	81723828	81723828	BNC1	15	G	G	T	48
C11orf30	56946	hgsc.bcm.edu	36	11	75852599	75852599	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	75852599	75852599	C11orf30	11	G	G	T	36
C15orf42	90381	hgsc.bcm.edu	36	15	87946163	87946163	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	87946163	87946163	C15orf42	15	A	A	C	9
C1orf38	9473	hgsc.bcm.edu	36	1	28078808	28078808	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	28078808	28078808	C1orf38	1	C	C	T	20
C1QL3	389941	hgsc.bcm.edu	36	10	16596660	16596660	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	16596660	16596660	C1QL3	10	C	C	G	20
GCFC1	94104	hgsc.bcm.edu	36	21	33056492	33056492	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	33056492	33056492	GCFC1	21	A	A	C	9
C3orf30	152405	hgsc.bcm.edu	36	3	120349021	120349021	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	120349021	120349021	C3orf30	3	T	T	C	62
C6orf81	221481	hgsc.bcm.edu	36	6	35824353	35824353	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	35824353	35824353	C6orf81	6	G	G	T	44
C8orf76	84933	hgsc.bcm.edu	36	8	124301591	124301591	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	124301591	124301591	C8orf76	8	C	C	A	32
CACNA1A	773	hgsc.bcm.edu	36	19	13184516	13184521	+	In_Frame_Del	DEL	CGGGGG	CGGGGG	-	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	CGGGGG	CGGGGG	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Del	DEL	13184516	13184521	CACNA1A	19	CGGGGG	CGGGGG	-	19
CCDC141	285025	hgsc.bcm.edu	36	2	179426450	179426450	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	179426450	179426450	CCDC141	2	C	C	A	30
CCNF	899	hgsc.bcm.edu	36	16	2435507	2435507	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	2435507	2435507	CCNF	16	T	T	C	62
CDH11	1009	hgsc.bcm.edu	36	16	63539460	63539460	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	63539460	63539460	CDH11	16	T	T	A	60
CDH18	1016	hgsc.bcm.edu	36	5	19757273	19757273	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	19757273	19757273	CDH18	5	C	C	T	27
CEACAM20	125931	hgsc.bcm.edu	36	19	49707978	49707978	+	Splice_Site_SNP	SNP	T	T	C	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	49707978	49707978	CEACAM20	19	T	T	C	53
CLIP4	79745	hgsc.bcm.edu	36	2	29220191	29220191	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	29220191	29220191	CLIP4	2	C	C	T	27
CLU	1191	hgsc.bcm.edu	36	8	27518486	27518486	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	27518486	27518486	CLU	8	G	G	A	39
CNGA1	1259	hgsc.bcm.edu	36	4	47633854	47633854	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	47633854	47633854	CNGA1	4	C	C	G	32
CREBBP	1387	hgsc.bcm.edu	36	16	3729725	3729725	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	3729725	3729725	CREBBP	16	A	A	C	2
CSF1	1435	hgsc.bcm.edu	36	1	110265998	110265998	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	110265998	110265998	CSF1	1	G	G	A	40
CSF2RB	1439	hgsc.bcm.edu	36	22	35652027	35652027	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	35652027	35652027	CSF2RB	22	G	G	T	34
DDB1	1642	hgsc.bcm.edu	36	11	60836040	60836040	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	60836040	60836040	DDB1	11	G	G	A	47
DNMBP	23268	hgsc.bcm.edu	36	10	101706483	101706483	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	101706483	101706483	DNMBP	10	G	G	T	35
DSP	1832	hgsc.bcm.edu	36	6	7528707	7528707	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	7528707	7528707	DSP	6	T	T	C	59
DYRK1A	1859	hgsc.bcm.edu	36	21	37784529	37784529	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	37784529	37784529	DYRK1A	21	A	A	G	16
ECT2	1894	hgsc.bcm.edu	36	3	173955783	173955783	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	173955783	173955783	ECT2	3	G	G	C	33
EFHC2	80258	hgsc.bcm.edu	36	X	44005473	44005473	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	44005473	44005473	EFHC2	23	C	C	T	19
ENTPD5	957	hgsc.bcm.edu	36	14	73519524	73519524	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	73519524	73519524	ENTPD5	14	C	C	G	28
ERCC6L	54821	hgsc.bcm.edu	36	X	71341605	71341605	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	71341605	71341605	ERCC6L	23	T	T	G	63
FAM171A1	221061	hgsc.bcm.edu	36	10	15336831	15336831	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	15336831	15336831	FAM171A1	10	C	C	A	29
ESYT1	23344	hgsc.bcm.edu	36	12	54808606	54808606	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	54808606	54808606	ESYT1	12	G	G	T	44
FAM82B	51115	hgsc.bcm.edu	36	8	87567829	87567829	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	87567829	87567829	FAM82B	8	C	C	T	24
FAM8A1	51439	hgsc.bcm.edu	36	6	17713145	17713145	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	17713145	17713145	FAM8A1	6	T	T	C	49
FARP2	9855	hgsc.bcm.edu	36	2	242078056	242078056	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	242078056	242078056	FARP2	2	G	G	C	33
FAT1	2195	hgsc.bcm.edu	36	4	187762615	187762615	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	187762615	187762615	FAT1	4	C	C	G	32
FAT2	2196	hgsc.bcm.edu	36	5	150904295	150904295	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	150904295	150904295	FAT2	5	G	G	T	39
FGD3	89846	hgsc.bcm.edu	36	9	94805063	94805063	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	94805063	94805063	FGD3	9	G	G	A	35
FGD6	55785	hgsc.bcm.edu	36	12	94090529	94090529	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	94090529	94090529	FGD6	12	G	G	T	35
FGF12	2257	hgsc.bcm.edu	36	3	193560948	193560948	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	193560948	193560948	FGF12	3	A	A	T	14
FRMD4B	23150	hgsc.bcm.edu	36	3	69326925	69326925	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	69326925	69326925	FRMD4B	3	G	G	T	45
FSTL5	56884	hgsc.bcm.edu	36	4	162900106	162900106	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	162900106	162900106	FSTL5	4	C	C	G	30
GABARAPL2	11345	hgsc.bcm.edu	36	16	74168751	74168751	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	74168751	74168751	GABARAPL2	16	A	A	G	9
GART	2618	hgsc.bcm.edu	36	21	33815163	33815163	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	33815163	33815163	GART	21	C	C	G	21
GAS2	2620	hgsc.bcm.edu	36	11	22663843	22663843	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	22663843	22663843	GAS2	11	C	C	A	28
GHRL	51738	hgsc.bcm.edu	36	3	10303459	10303459	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	10303459	10303459	GHRL	3	C	C	A	22
GJB6	10804	hgsc.bcm.edu	36	13	19695042	19695042	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	19695042	19695042	GJB6	13	A	A	T	4
HKDC1	80201	hgsc.bcm.edu	36	10	70680114	70680114	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	70680114	70680114	HKDC1	10	A	A	G	12
IBTK	25998	hgsc.bcm.edu	36	6	82977993	82977993	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	82977993	82977993	IBTK	6	G	G	C	40
IFFO1	25900	hgsc.bcm.edu	36	12	6530377	6530390	+	Frame_Shift_Del	DEL	CTCATTTACACGGT	CTCATTTACACGGT	-	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	CTCATTTACACGGT	CTCATTTACACGGT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	6530377	6530390	IFFO1	12	CTCATTTACACGGT	CTCATTTACACGGT	-	28
IL20RB	53833	hgsc.bcm.edu	36	3	138191004	138191004	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	138191004	138191004	IL20RB	3	C	C	T	21
IMMT	10989	hgsc.bcm.edu	36	2	86251952	86251952	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	86251952	86251952	IMMT	2	G	G	A	33
IRF6	3664	hgsc.bcm.edu	36	1	208030850	208030850	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	208030850	208030850	IRF6	1	C	C	G	29
ITIH5	80760	hgsc.bcm.edu	36	10	7661913	7661913	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	7661913	7661913	ITIH5	10	G	G	C	40
KCNJ12	3768	hgsc.bcm.edu	36	17	21260275	21260275	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	21260275	21260275	KCNJ12	17	C	C	T	31
KCNJ15	3772	hgsc.bcm.edu	36	21	38594008	38594008	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	38594008	38594008	KCNJ15	21	A	A	T	5
KRT38	8687	hgsc.bcm.edu	36	17	36849119	36849119	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	36849119	36849119	KRT38	17	G	G	C	43
LARP1	23367	hgsc.bcm.edu	36	5	154154929	154154929	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	154154929	154154929	LARP1	5	G	G	A	45
LRRC63	220416	hgsc.bcm.edu	36	13	45700067	45700067	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	45700067	45700067	LRRC63	13	C	C	A	29
MAP3K7	6885	hgsc.bcm.edu	36	6	91338234	91338234	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	91338234	91338234	MAP3K7	6	C	C	A	30
MED24	9862	hgsc.bcm.edu	36	17	35436433	35436433	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	35436433	35436433	MED24	17	G	G	A	41
MLL3	58508	hgsc.bcm.edu	36	7	151504560	151504560	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	151504560	151504560	MLL3	7	A	A	C	9
MTERFD1	51001	hgsc.bcm.edu	36	8	97320977	97320977	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	97320977	97320977	MTERFD1	8	A	A	G	14
MTOR	2475	hgsc.bcm.edu	36	1	11213970	11213970	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	11213970	11213970	MTOR	1	C	C	T	29
MYO18A	399687	hgsc.bcm.edu	36	17	24443508	24443508	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	24443508	24443508	MYO18A	17	G	G	C	48
N4BP1	9683	hgsc.bcm.edu	36	16	47153235	47153235	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	47153235	47153235	N4BP1	16	C	C	G	32
NFX1	4799	hgsc.bcm.edu	36	9	33303762	33303762	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	33303762	33303762	NFX1	9	G	G	A	46
NOS1	4842	hgsc.bcm.edu	36	12	116210390	116210390	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	116210390	116210390	NOS1	12	C	C	G	20
NT5E	4907	hgsc.bcm.edu	36	6	86257048	86257048	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	86257048	86257048	NT5E	6	C	C	T	27
OR4F4	26682	hgsc.bcm.edu	36	15	100280710	100280711	+	Frame_Shift_Ins	INS	-	-	A	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	100280710	100280711	OR4F4	15	-	-	A	17
OR8I2	120586	hgsc.bcm.edu	36	11	55617883	55617883	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	55617883	55617883	OR8I2	11	A	A	-	8
OR9G4	283189	hgsc.bcm.edu	36	11	56267006	56267006	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	56267006	56267006	OR9G4	11	G	G	C	48
OTOA	146183	hgsc.bcm.edu	36	16	21647159	21647159	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	21647159	21647159	OTOA	16	G	G	A	42
PABPC1	26986	hgsc.bcm.edu	36	8	101788377	101788377	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	101788377	101788377	PABPC1	8	A	A	G	12
PAOX	196743	hgsc.bcm.edu	36	10	135044989	135044994	+	In_Frame_Del	DEL	CCCTGC	CCCTGC	-	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	CCCTGC	CCCTGC	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Del	DEL	135044989	135044994	PAOX	10	CCCTGC	CCCTGC	-	26
PLA2G15	23659	hgsc.bcm.edu	36	16	66840782	66840782	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	66840782	66840782	PLA2G15	16	C	C	T	20
PON3	5446	hgsc.bcm.edu	36	7	94831193	94831193	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	94831193	94831193	PON3	7	G	G	C	33
POPDC3	64208	hgsc.bcm.edu	36	6	105716247	105716247	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	105716247	105716247	POPDC3	6	T	T	C	49
PSMC3	5702	hgsc.bcm.edu	36	11	47402832	47402832	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	47402832	47402832	PSMC3	11	C	C	G	30
PSORS1C1	170679	hgsc.bcm.edu	36	6	31214212	31214212	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	31214212	31214212	PSORS1C1	6	C	C	G	32
PTPN3	5774	hgsc.bcm.edu	36	9	111184496	111184496	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	111184496	111184496	PTPN3	9	T	T	A	59
PTPN3	5774	hgsc.bcm.edu	36	9	111184498	111184498	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	111184498	111184498	PTPN3	9	G	G	T	44
PURG	29942	hgsc.bcm.edu	36	8	31009041	31009042	+	Frame_Shift_Del	DEL	AA	AA	-	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	AA	AA	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	31009041	31009042	PURG	8	AA	AA	-	9
PXDNL	137902	hgsc.bcm.edu	36	8	52498750	52498750	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	52498750	52498750	PXDNL	8	T	T	C	49
RAB41	347517	hgsc.bcm.edu	36	X	69420885	69420885	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	69420885	69420885	RAB41	23	A	A	G	6
RABEP1	9135	hgsc.bcm.edu	36	17	5227143	5227143	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	5227143	5227143	RABEP1	17	G	G	A	46
RBPJL	11317	hgsc.bcm.edu	36	20	43375525	43375525	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	43375525	43375525	RBPJL	20	G	G	T	46
REV1	51455	hgsc.bcm.edu	36	2	99386651	99386651	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	99386651	99386651	REV1	2	C	C	G	19
RIPK3	11035	hgsc.bcm.edu	36	14	23877326	23877326	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	23877326	23877326	RIPK3	14	C	C	T	17
RNF160	26046	hgsc.bcm.edu	36	21	29261077	29261077	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	29261077	29261077	RNF160	21	T	T	-	52
RNF25	64320	hgsc.bcm.edu	36	2	219237390	219237390	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	219237390	219237390	RNF25	2	G	G	A	47
SAMD12	401474	hgsc.bcm.edu	36	8	119461087	119461087	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	119461087	119461087	SAMD12	8	A	A	C	11
SCUBE3	222663	hgsc.bcm.edu	36	6	35315512	35315512	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	35315512	35315512	SCUBE3	6	G	G	C	33
SEMA3A	10371	hgsc.bcm.edu	36	7	83478477	83478477	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	83478477	83478477	SEMA3A	7	C	C	A	20
SHQ1	55164	hgsc.bcm.edu	36	3	72949148	72949148	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	72949148	72949148	SHQ1	3	G	G	T	37
SIRPD	128646	hgsc.bcm.edu	36	20	1480452	1480452	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	1480452	1480452	SIRPD	20	G	G	T	43
SLC30A5	64924	hgsc.bcm.edu	36	5	68448173	68448173	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	68448173	68448173	SLC30A5	5	G	G	T	48
SLC35F5	80255	hgsc.bcm.edu	36	2	114216747	114216747	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	114216747	114216747	SLC35F5	2	A	A	-	5
SLC36A3	285641	hgsc.bcm.edu	36	5	150637296	150637296	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	150637296	150637296	SLC36A3	5	C	C	G	29
SLC44A5	204962	hgsc.bcm.edu	36	1	75457529	75457529	+	Splice_Site_SNP	SNP	C	C	G	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	75457529	75457529	SLC44A5	1	C	C	G	18
SLC6A15	55117	hgsc.bcm.edu	36	12	83809943	83809943	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	83809943	83809943	SLC6A15	12	C	C	T	28
SOSTDC1	25928	hgsc.bcm.edu	36	7	16468964	16468964	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	16468964	16468964	SOSTDC1	7	C	C	T	21
SPDEF	25803	hgsc.bcm.edu	36	6	34615147	34615147	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	34615147	34615147	SPDEF	6	C	C	A	31
SPDYE4	388333	hgsc.bcm.edu	36	17	8602399	8602407	+	In_Frame_Del	DEL	CGGGGGGCG	CGGGGGGCG	-	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	CGGGGGGCG	CGGGGGGCG	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Del	DEL	8602399	8602407	SPDYE4	17	CGGGGGGCG	CGGGGGGCG	-	19
SPG11	80208	hgsc.bcm.edu	36	15	42699756	42699756	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	42699756	42699756	SPG11	15	G	G	A	33
SVEP1	79987	hgsc.bcm.edu	36	9	112209360	112209360	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	112209360	112209360	SVEP1	9	C	C	T	20
SVEP1	79987	hgsc.bcm.edu	36	9	112281803	112281803	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	112281803	112281803	SVEP1	9	G	G	C	34
SYNE1	23345	hgsc.bcm.edu	36	6	152681008	152681008	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	152681008	152681008	SYNE1	6	G	G	T	42
TBC1D7	51256	hgsc.bcm.edu	36	6	13429172	13429172	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	13429172	13429172	TBC1D7	6	G	G	A	39
TCHHL1	126637	hgsc.bcm.edu	36	1	150325859	150325859	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	150325859	150325859	TCHHL1	1	T	T	A	62
TGFBR3	7049	hgsc.bcm.edu	36	1	91996862	91996862	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	91996862	91996862	TGFBR3	1	G	G	T	47
TMEM33	55161	hgsc.bcm.edu	36	4	41650930	41650930	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	41650930	41650930	TMEM33	4	A	A	C	7
TNNI3K	51086	hgsc.bcm.edu	36	1	74677791	74677791	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	74677791	74677791	TNNI3K	1	C	C	T	29
CELF3	11189	hgsc.bcm.edu	36	1	149948134	149948134	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	149948134	149948134	CELF3	1	C	C	T	23
TP53	7157	hgsc.bcm.edu	36	17	7518273	7518273	+	Missense_Mutation	SNP	C	C	T	rs28934575	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	7518273	7518273	TP53	17	C	C	T	23
TRIM21	6737	hgsc.bcm.edu	36	11	4364784	4364784	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	4364784	4364784	TRIM21	11	C	C	G	17
TRPV3	162514	hgsc.bcm.edu	36	17	3374364	3374364	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	3374364	3374364	TRPV3	17	A	A	G	3
TTN	7273	hgsc.bcm.edu	36	2	179143360	179143360	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	179143360	179143360	TTN	2	G	G	T	39
TULP2	7288	hgsc.bcm.edu	36	19	54077126	54077126	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	54077126	54077126	TULP2	19	G	G	T	36
UBAP2	55833	hgsc.bcm.edu	36	9	33917935	33917935	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	33917935	33917935	UBAP2	9	G	G	C	46
UIMC1	51720	hgsc.bcm.edu	36	5	176328333	176328333	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	176328333	176328333	UIMC1	5	A	A	C	6
UNC5B	219699	hgsc.bcm.edu	36	10	72717438	72717438	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	72717438	72717438	UNC5B	10	C	C	T	23
USP34	9736	hgsc.bcm.edu	36	2	61292479	61292479	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	61292479	61292479	USP34	2	G	G	C	45
USP34	9736	hgsc.bcm.edu	36	2	61429042	61429042	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	61429042	61429042	USP34	2	C	C	A	26
USP47	55031	hgsc.bcm.edu	36	11	11920691	11920691	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	11920691	11920691	USP47	11	G	G	A	47
VPS52	6293	hgsc.bcm.edu	36	6	33327328	33327328	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	33327328	33327328	VPS52	6	C	C	T	20
VWCE	220001	hgsc.bcm.edu	36	11	60810381	60810381	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	60810381	60810381	VWCE	11	G	G	T	39
WBP1	23559	hgsc.bcm.edu	36	2	74539300	74539300	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	74539300	74539300	WBP1	2	A	A	G	2
WDR88	126248	hgsc.bcm.edu	36	19	38320501	38320501	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	38320501	38320501	WDR88	19	A	A	T	7
WFDC1	58189	hgsc.bcm.edu	36	16	82915529	82915529	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	82915529	82915529	WFDC1	16	G	G	T	43
WHSC1	7468	hgsc.bcm.edu	36	4	1932563	1932563	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	1932563	1932563	WHSC1	4	G	G	C	33
ZCCHC17	51538	hgsc.bcm.edu	36	1	31584404	31584404	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	31584404	31584404	ZCCHC17	1	G	G	C	33
ZNF136	7695	hgsc.bcm.edu	36	19	12157714	12157714	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	12157714	12157714	ZNF136	19	C	C	G	32
ZNF185	7739	hgsc.bcm.edu	36	X	151839940	151839940	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	151839940	151839940	ZNF185	23	C	C	T	31
ZNF518B	85460	hgsc.bcm.edu	36	4	10054267	10054267	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-04-1338-01	TCGA-04-1338-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	10054267	10054267	ZNF518B	4	A	A	C	15