Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context SERPINF1 5176 genome.wustl.edu 36 17 1621076 1621076 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1332-01 TCGA-04-1332-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 1621076 1621076 SERPINF1 17 C C T 27 RANBP6 26953 genome.wustl.edu 36 9 6004609 6004609 + Silent SNP A A G novel Unknown TCGA-04-1332-01 TCGA-04-1332-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 6004609 6004609 RANBP6 9 A A G 8 TP53 7157 genome.wustl.edu 36 17 7519113 7519113 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1332-01 TCGA-04-1332-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7519113 7519113 TP53 17 C C G 27 DNAH11 8701 genome.wustl.edu 36 7 21814035 21814035 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1332-01 TCGA-04-1332-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 21814035 21814035 DNAH11 7 G G A 38 EPHB2 2048 genome.wustl.edu 36 1 23064266 23064266 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1332-01 TCGA-04-1332-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 23064266 23064266 EPHB2 1 C C G 32 FRY 10129 genome.wustl.edu 36 13 31733643 31733643 + Silent SNP A A G novel Unknown TCGA-04-1332-01 TCGA-04-1332-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 31733643 31733643 FRY 13 A A G 13 PSTPIP2 9050 genome.wustl.edu 36 18 41832788 41832788 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1332-01 TCGA-04-1332-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 41832788 41832788 PSTPIP2 18 C C T 26 WDR87 83889 genome.wustl.edu 36 19 43075607 43075607 + Missense_Mutation SNP T G G novel Unknown TCGA-04-1332-01 TCGA-04-1332-10 T T G G G G Unknown Valid Germline 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 43075607 43075607 WDR87 19 T G G 63 PORCN 64840 genome.wustl.edu 36 X 48254630 48254630 + Missense_Mutation SNP T T G novel Unknown TCGA-04-1332-01 TCGA-04-1332-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 48254630 48254630 PORCN 23 T T G 63 RELB 5971 genome.wustl.edu 36 19 50229366 50229366 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1332-01 TCGA-04-1332-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 50229366 50229366 RELB 19 G G A 39 ERCC6 2074 genome.wustl.edu 36 10 50378606 50378606 + Missense_Mutation SNP G G C novel Unknown TCGA-04-1332-01 TCGA-04-1332-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 50378606 50378606 ERCC6 10 G G C 37 RSPH6A 81492 genome.wustl.edu 36 19 50995594 50995594 + Silent SNP G G C novel Unknown TCGA-04-1332-01 TCGA-04-1332-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 50995594 50995594 RSPH6A 19 G G C 39 B3GNT2 10678 genome.wustl.edu 36 2 62303370 62303370 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1332-01 TCGA-04-1332-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 62303370 62303370 B3GNT2 2 G G A 38 ADAMTS14 140766 genome.wustl.edu 36 10 72190237 72190237 + Silent SNP G G C novel Unknown TCGA-04-1332-01 TCGA-04-1332-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 72190237 72190237 ADAMTS14 10 G G C 39 PAPLN 89932 genome.wustl.edu 36 14 72787459 72787459 + Missense_Mutation SNP C C A novel Unknown TCGA-04-1332-01 TCGA-04-1332-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 72787459 72787459 PAPLN 14 C C A 25 TTC18 118491 genome.wustl.edu 36 10 74783467 74783467 + Missense_Mutation SNP C C A novel Unknown TCGA-04-1332-01 TCGA-04-1332-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 74783467 74783467 TTC18 10 C C A 28 AP3B2 8120 genome.wustl.edu 36 15 81128641 81128641 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1332-01 TCGA-04-1332-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 81128641 81128641 AP3B2 15 C C T 27 PMPCB 9512 genome.wustl.edu 36 7 102735326 102735326 + Missense_Mutation SNP G G C novel Unknown TCGA-04-1332-01 TCGA-04-1332-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 102735326 102735326 PMPCB 7 G G C 45 CENPE 1062 genome.wustl.edu 36 4 104274451 104274451 + Silent SNP G G A novel Unknown TCGA-04-1332-01 TCGA-04-1332-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 104274451 104274451 CENPE 4 G G A 47 AP4B1 10717 genome.wustl.edu 36 1 114244294 114244294 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1332-01 TCGA-04-1332-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 114244294 114244294 AP4B1 1 C C T 19 GPRC6A 222545 genome.wustl.edu 36 6 117220057 117220057 + Silent SNP T T G novel Unknown TCGA-04-1332-01 TCGA-04-1332-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 117220057 117220057 GPRC6A 6 T T G 55 LOC442434 442434 genome.wustl.edu 36 9 120566038 120566038 + Missense_Mutation SNP G G C novel Unknown TCGA-04-1332-01 TCGA-04-1332-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 120566038 120566038 LOC442434 9 G G C 42 OR10G7 390265 genome.wustl.edu 36 11 123414444 123414444 + Missense_Mutation SNP T T C novel Unknown TCGA-04-1332-01 TCGA-04-1332-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 123414444 123414444 OR10G7 11 T T C 58 TPK1 27010 genome.wustl.edu 36 7 143919487 143919487 + Missense_Mutation SNP T T C novel Unknown TCGA-04-1332-01 TCGA-04-1332-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 143919487 143919487 TPK1 7 T T C 52 HPS3 84343 genome.wustl.edu 36 3 150360541 150360541 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1332-01 TCGA-04-1332-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 150360541 150360541 HPS3 3 G G T 44 LELP1 149018 genome.wustl.edu 36 1 151444086 151444086 + Silent SNP C C T novel Unknown TCGA-04-1332-01 TCGA-04-1332-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 151444086 151444086 LELP1 1 C C T 24 IL6R 3570 genome.wustl.edu 36 1 152673740 152673740 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1332-01 TCGA-04-1332-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 152673740 152673740 IL6R 1 G G A 40 TTN 7273 genome.wustl.edu 36 2 179145912 179145912 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1332-01 TCGA-04-1332-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 179145912 179145912 TTN 2 C C T 27 TTN 7273 genome.wustl.edu 36 2 179185371 179185371 + Missense_Mutation SNP T T C novel Unknown TCGA-04-1332-01 TCGA-04-1332-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 179185371 179185371 TTN 2 T T C 56 MAP3K13 9175 genome.wustl.edu 36 3 186667364 186667364 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1332-01 TCGA-04-1332-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 186667364 186667364 MAP3K13 3 G G A 40 NCL 4691 genome.wustl.edu 36 2 232028561 232028561 + Silent SNP G G A novel Unknown TCGA-04-1332-01 TCGA-04-1332-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 232028561 232028561 NCL 2 G G A 45 UGT1A9 54600 genome.wustl.edu 36 2 234246084 234246084 + Silent SNP G G A novel Unknown TCGA-04-1332-01 TCGA-04-1332-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 234246084 234246084 UGT1A9 2 G G A 39 TCHH 7062 genome.wustl.edu 36 1 150348232 150348232 + Missense_Mutation SNP A A T Unknown TCGA-04-1332-01 TCGA-04-1332-10 A A A T A A Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 150348232 150348232 TCHH 1 A A T 9 KCNT1 57582 genome.wustl.edu 36 9 137782674 137782674 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1332-01 TCGA-04-1332-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 137782674 137782674 KCNT1 9 G G A 40