Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm CSMD2 114784 hgsc.bcm.edu hg19 1 34209061 34209061 + Missense_Mutation SNP C C G novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 CSMD2,caecum,carcinoma,0,1 CSMD2 NM_052896 exon14 c.G1873C p.V625L GCTCCACGTCAAT . 71.0 23.0 60.0 0.0 . 946 . . Atlas-SNP COL24A1 255631 hgsc.bcm.edu hg19 1 86200503 86200503 + Nonsense_Mutation SNP T T A novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . COL24A1 NM_152890 exon59 c.A4927T p.K1643X ATCCCTTGAAACC . 200.0 77.0 187.0 0.0 . 202 . . Atlas-SNP ANKRD35 148741 hgsc.bcm.edu hg19 1 145562472 145562472 + Silent SNP C C T novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . ANKRD35 NM_144698 exon10 c.C2160T p.S720S ACAAAGCAAAGCA . 185.0 52.0 163.0 0.0 . 96 . . Atlas-SNP YY1AP1 55249 hgsc.bcm.edu hg19 1 155640243 155640243 + Missense_Mutation SNP G G C novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . YY1AP1 NM_001198904 exon7 c.C1010G p.P337R AAACAGGGAAATT . 148.0 41.0 124.0 0.0 . 104 . . Atlas-SNP KIAA1804 0 hgsc.bcm.edu hg19 1 233489695 233489695 + Missense_Mutation SNP A A G novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . KIAA1804 NM_032435 exon3 c.A1129G p.M377V AAGCTCATGAAAG . 127.0 75.0 90.0 0.0 . 129 . . Atlas-SNP CCDC121 79635 hgsc.bcm.edu hg19 2 27849931 27849931 + Nonsense_Mutation SNP T T A novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . CCDC121 NM_001142683 exon2 c.A1222T p.R408X GCAGTCTCTGCCT . 75.0 34.0 87.0 0.0 . 43 . . Atlas-SNP CLK1 1195 hgsc.bcm.edu hg19 2 201726515 201726515 + Missense_Mutation SNP C C G novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . CLK1 NM_001162407 exon2 c.G197C p.S66T CTGCTGCTCCTCC . 86.0 38.0 107.0 0.0 . 103 . . Atlas-SNP ATG9A 79065 hgsc.bcm.edu hg19 2 220087067 220087067 + Missense_Mutation SNP G G C novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . ATG9A NM_001077198 exon12 c.C1954G p.L652V AGCGCAGGGCAGA . 107.0 31.0 143.0 0.0 . 50 . . Atlas-SNP SCN10A 6336 hgsc.bcm.edu hg19 3 38797307 38797307 + Missense_Mutation SNP C C A novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 SCN10A,colon,carcinoma,0,2 SCN10A NM_006514 exon10 c.G1433T p.R478L TCAGAGCGGGGTG . 102.0 41.0 107.0 1.0 . 359 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41266136 41266136 + Missense_Mutation SNP T T C rs121913407 bycluster TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 CTNNB1,NS,carcinoma,0,1 CTNNB1 NM_001098209 exon3 c.T133C p.S45P GCTCCTTCTCTGA . 146.0 68.0 119.0 0.0 . 4904 . . Atlas-SNP TTC14 151613 hgsc.bcm.edu hg19 3 180328329 180328329 + Silent SNP A A G novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . TTC14 NM_133462 exon12 c.A2312G p.X771X AAAATTAATACAC . 129.0 64.0 139.0 0.0 . 112 . . Atlas-SNP LRRC33 375387 hgsc.bcm.edu hg19 3 196387632 196387632 + Missense_Mutation SNP A A G novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . LRRC33 NM_198565 exon3 c.A1118G p.E373G AGCACGAGCCCCC . 69.0 32.0 77.0 0.0 . 91 . . Atlas-SNP SENP5 205564 hgsc.bcm.edu hg19 3 196612404 196612404 + Missense_Mutation SNP A A G novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . SENP5 NM_152699 exon2 c.A352G p.K118E GCAGAGAAGCTGT . 86.0 31.0 108.0 0.0 . 68 . . Atlas-SNP CWH43 80157 hgsc.bcm.edu hg19 4 49005762 49005762 + Silent SNP A A G novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . CWH43 NM_025087 exon7 c.A813G p.S271S AGCTTCAGCTGCG . 70.0 32.0 80.0 0.0 . 101 . . Atlas-SNP CENPE 1062 hgsc.bcm.edu hg19 4 104065618 104065618 + Missense_Mutation SNP T T C novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . CENPE NM_001813 exon33 c.A5015G p.Q1672R AGTATCTGAGTCA . 109.0 44.0 77.0 0.0 . 253 . . Atlas-SNP SGTB 54557 hgsc.bcm.edu hg19 5 64976566 64976566 + Missense_Mutation SNP C C T novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . SGTB NM_019072 exon7 c.G535A p.A179T CTAATGCCTTTTG . 121.0 9.0 98.0 0.0 . 22 . . Atlas-SNP ARL10 285598 hgsc.bcm.edu hg19 5 175798739 175798739 + Silent SNP C C T novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . ARL10 NM_173664 exon4 c.C576T p.A192A CGAGGCCATGAGT . 157.0 8.0 115.0 0.0 . 19 . . Atlas-SNP RXRB 6257 hgsc.bcm.edu hg19 6 33162491 33162491 + Nonsense_Mutation SNP C C A novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . RXRB NM_001270401 exon10 c.G1582T p.E528X GCATCTCCATGAG . 66.0 34.0 87.0 0.0 . 34 . . Atlas-SNP ANKRD66 100287718 hgsc.bcm.edu hg19 6 46721610 46721610 + Silent SNP C C A novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . . NM_001162435 exon4 c.C480A p.A160A CGACGCCCCTGAC . 119.0 39.0 123.0 0.0 . . . . Atlas-SNP FZD1 8321 hgsc.bcm.edu hg19 7 90895843 90895843 + Missense_Mutation SNP A A G novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . FZD1 NM_003505 exon1 c.A1648G p.I550V GCCACCATCGTCA . 48.0 23.0 58.0 0.0 . 64 . . Atlas-SNP MYC 4609 hgsc.bcm.edu hg19 8 128750607 128750607 + Missense_Mutation SNP G G C rs61752959 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 MYC,trunk,malignant_melanoma,0,1 MYC NM_002467 exon2 c.G144C p.Q48H CTACCAGCAGCAG . 87.0 4.0 88.0 1.0 . 168 . G|0.985;A|0.015 Atlas-SNP KANK1 23189 hgsc.bcm.edu hg19 9 713335 713335 + Missense_Mutation SNP T T G novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . KANK1 NM_001256876 exon7 c.T2569G p.S857A CCTCACTCACAGA . 106.0 39.0 111.0 0.0 . 231 . . Atlas-SNP FRMPD1 22844 hgsc.bcm.edu hg19 9 37746177 37746177 + Missense_Mutation SNP C C A novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . FRMPD1 NM_014907 exon16 c.C4148A p.A1383D GGCCTGCCCGAGC . 54.0 25.0 80.0 0.0 . 237 . . Atlas-SNP CDK9 1025 hgsc.bcm.edu hg19 9 130550509 130550509 + Missense_Mutation SNP T T C novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . CDK9 NM_001261 exon5 c.T449C p.M150T GGGACATGAAGGC . 64.0 23.0 83.0 0.0 . 22 . . Atlas-SNP RPS13 6207 hgsc.bcm.edu hg19 11 17099170 17099170 + Missense_Mutation SNP G G A novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 RPS13,NS,carcinoma,+2,1 RPS13 NM_001017 exon1 c.C19T p.P7S ACCCGGGAGCATG . 235.0 110.0 258.0 0.0 . 14 . . Atlas-SNP ZNF202 7753 hgsc.bcm.edu hg19 11 123598282 123598282 + Missense_Mutation SNP T T A novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . ZNF202 NM_003455 exon8 c.A854T p.D285V ATCTCATCAGGTC . 57.0 26.0 57.0 0.0 . 72 . . Atlas-SNP SMG1 23049 hgsc.bcm.edu hg19 16 18937327 18937327 + Missense_Mutation SNP C C T novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . SMG1 NM_015092 exon1 c.G37A p.G13S CGCCGCCGCTGCT . 92.0 5.0 78.0 0.0 . 401 . . Atlas-SNP ZNF267 10308 hgsc.bcm.edu hg19 16 31896500 31896500 + Missense_Mutation SNP C C T novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . ZNF267 NM_003414 exon3 c.C149T p.P50L CTAAGCCGGACCT . 105.0 7.0 127.0 0.0 . 94 . . Atlas-SNP ZFP90 146198 hgsc.bcm.edu hg19 16 68598406 68598406 + Missense_Mutation SNP G G C novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . ZFP90 NM_133458 exon4 c.G1716C p.E572D GCATGAGAGAACT . 124.0 48.0 151.0 0.0 . 67 . . Atlas-SNP GSG2 83903 hgsc.bcm.edu hg19 17 3629472 3629472 + Missense_Mutation SNP T T C novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . GSG2 NM_031965 exon1 c.T2243C p.L748P ATTACCTGACAGA . 100.0 4.0 122.0 0.0 . 48 . . Atlas-SNP CCDC144NL 339184 hgsc.bcm.edu hg19 17 20768818 20768818 + Silent SNP A A G novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . CCDC144NL NM_001004306 exon4 c.T576C p.Y192Y ATGACAATACTCT . 25.0 5.0 19.0 0.0 . 34 . . Atlas-SNP OR1M1 125963 hgsc.bcm.edu hg19 19 9204711 9204711 + Missense_Mutation SNP C C T novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . OR1M1 NM_001004456 exon1 c.C791T p.S264L CCTCCTCGGTCCT . 68.0 7.0 76.0 0.0 . 52 . . Atlas-SNP SIX5 147912 hgsc.bcm.edu hg19 19 46270086 46270086 + Silent SNP G G A novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . SIX5 NM_175875 exon2 c.C1131T p.A377A CTCGCTGGCCCCC . 55.0 20.0 81.0 0.0 . 35 . . Atlas-SNP ZSCAN4 201516 hgsc.bcm.edu hg19 19 58189641 58189641 + Missense_Mutation SNP G G A novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . ZSCAN4 NM_152677 exon5 c.G670A p.E224K ATCCAGGAAGAGA . 115.0 51.0 99.0 0.0 . 72 . . Atlas-SNP EDN3 1908 hgsc.bcm.edu hg19 20 57899428 57899428 + Missense_Mutation SNP C C T novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . EDN3 NM_207034 exon5 c.C631T p.H211Y GACCTCCACCATC . 127.0 60.0 143.0 0.0 . 83 . . Atlas-SNP FBLN1 2192 hgsc.bcm.edu hg19 22 45937218 45937218 + Silent SNP C C T novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . FBLN1 NM_006487 exon9 c.C1032T p.G344G CCGTGGCTACCAT . 108.0 40.0 108.0 0.0 . 143 . . Atlas-SNP CELSR1 9620 hgsc.bcm.edu hg19 22 46930896 46930896 + Silent SNP G G A novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . CELSR1 NM_014246 exon1 c.C2172T p.L724L GCCTGTGAGCTGG . 33.0 14.0 54.0 0.0 . 242 . . Atlas-SNP PLXNB2 23654 hgsc.bcm.edu hg19 22 50718956 50718956 + Missense_Mutation SNP C C G novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . PLXNB2 NM_012401 exon25 c.G4137C p.Q1379H CACGTACTGCTCC . 54.0 17.0 59.0 0.0 . 172 . . Atlas-SNP KAL1 3730 hgsc.bcm.edu hg19 X 8504916 8504916 + Missense_Mutation SNP C C T novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . KAL1 NM_000216 exon11 c.G1517A p.R506Q TTTGGCCGTATTG . 211.0 83.0 217.0 0.0 . 78 . . Atlas-SNP CFP 5199 hgsc.bcm.edu hg19 X 47483694 47483694 + Missense_Mutation SNP G G T novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . CFP NM_001145252 exon9 c.C1390A p.P464T CCTCAGGGTCTTT . 147.0 63.0 151.0 0.0 . 43 . . Atlas-SNP ND4 0 hgsc.bcm.edu hg19 MT 11301 11301 + Missense_Mutation SNP T T C novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . . ENST00000361381 exon1 c.T542C p.L181P TCACTCTCACTGC . 65.0 5.0 10.0 0.0 . . . . Atlas-SNP BMP2K 55589 hgsc.bcm.edu hg19 4 79792095 79792115 + In_Frame_Del DEL CAGCAGCAGCAGCAACAGCAA CAGCAGCAGCAGCAACAGCAA - rs376418550 alternate_allele TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 CAGCAGCAGCAGCAACAGCAA CAGCAGCAGCAGCAACAGCAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . BMP2K NM_017593 exon11 c.1389_1409del p.463_470del . . 34.0 10.0 27.0 0.0 . 169 . . Atlas-INDEL IL6ST 3572 hgsc.bcm.edu hg19 5 55260054 55260065 + In_Frame_Del DEL TTGACAAAATAC TTGACAAAATAC - novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 TTGACAAAATAC TTGACAAAATAC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 .,1 IL6ST NM_002184 exon6 c.568_579del p.190_193del . . 193.0 73.0 165.0 0.0 . 75 . . Atlas-INDEL STARD8 9754 hgsc.bcm.edu hg19 X 67938119 67938126 + Frame_Shift_Del DEL TGGGCCCA TGGGCCCA - novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 TGGGCCCA TGGGCCCA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . STARD8 NM_001142503 exon6 c.1362_1369del p.454_457del . . 175.0 60.0 190.0 0.0 . 282 . . Atlas-INDEL TPP1 1200 hgsc.bcm.edu hg19 11 6636106 6636107 + Frame_Shift_Ins INS - - C novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . TPP1 NM_000391 exon12 c.1542_1543insG p.G514fs . . 72.0 27.0 97.0 0.0 . 71 . . Atlas-INDEL FARP1 10160 hgsc.bcm.edu hg19 13 98896955 98896956 + Frame_Shift_Ins INS - - T novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . FARP1 NM_001001715 exon3 c.382_383insT p.L128fs . . 75.0 23.0 84.0 0.0 . 207 . . Atlas-INDEL BASP1 10409 hgsc.bcm.edu hg19 5 17275402 17275403 + Frame_Shift_Ins INS - - CGAGGGCG novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . BASP1 NM_006317 exon2 c.77_78insCGAGGGCG p.A26fs . . 393.0 52.0 327.0 0.0 . 29 . . Atlas-INDEL CDKL4 344387 hgsc.bcm.edu hg19 2 39452979 39452979 + Splice_Site DEL C C - novel TCGA-WX-AA47-01A-11D-A38X-10 TCGA-WX-AA47-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dab9728a-5871-4bb0-9ae4-8c6b4885000f e0c88f8e-49d8-413f-be0d-85b5e3e27b15 . CDKL4 NM_001009565 exon3 c.290+2G>- . . . 73.0 26.0 59.0 0.0 . 30 . . Atlas-INDEL