Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
ZBTB8OS	339487	hgsc.bcm.edu	hg19	1	33087489	33087489	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ZBTB8OS	NM_178547	exon7	c.G514T	p.E172X	AAACTTCCGGGTT	.	47.0	24.0	74.0	0.0	.	9	.	.	Atlas-SNP
SERBP1	26135	hgsc.bcm.edu	hg19	1	67895954	67895954	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	SERBP1	NM_001018067	exon1	c.C30A	p.G10G	CACGCAGCCGAAG	.	134.0	50.0	186.0	0.0	.	31	.	.	Atlas-SNP
CELSR2	1952	hgsc.bcm.edu	hg19	1	109794350	109794350	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	CELSR2	NM_001408	exon1	c.A1649G	p.D550G	GACATGACTTCCC	.	68.0	26.0	147.0	0.0	.	228	.	.	Atlas-SNP
LCE1F	353137	hgsc.bcm.edu	hg19	1	152748923	152748923	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	LCE1F	NM_178354	exon1	c.A76G	p.T26A	TGCCCCACACCGA	.	695.0	114.0	481.0	0.0	.	42	.	.	Atlas-SNP
NTRK1	4914	hgsc.bcm.edu	hg19	1	156849827	156849827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	NTRK1_ENST00000392302,NS,carcinoma,0,4	NTRK1	NM_002529	exon16	c.C2083T	p.P695S	TGGATGCCGCCCG	.	185.0	12.0	124.0	0.0	.	287	.	.	Atlas-SNP
SLC30A1	7779	hgsc.bcm.edu	hg19	1	211749002	211749002	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	SLC30A1	NM_021194	exon2	c.C1252A	p.Q418K	CAGGCTGAATGGT	.	125.0	120.0	107.0	1.0	.	27	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228494331	228494331	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	OBSCN	NM_001271223	exon55	c.C14789T	p.T4930I	CCCTCACTGTCAC	.	91.0	50.0	91.0	0.0	.	2142	.	.	Atlas-SNP
OSR1	130497	hgsc.bcm.edu	hg19	2	19553505	19553505	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	OSR1	NM_145260	exon2	c.A62G	p.Y21C	AAGGAGTAGTTGG	.	126.0	16.0	138.0	0.0	.	29	.	.	Atlas-SNP
XIRP2	129446	hgsc.bcm.edu	hg19	2	168104195	168104195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	XIRP2	NM_152381	exon9	c.C6293T	p.S2098L	AAGAATCAGACAG	.	212.0	60.0	221.0	0.0	.	914	.	.	Atlas-SNP
COL3A1	1281	hgsc.bcm.edu	hg19	2	189871670	189871670	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	COL3A1	NM_000090	exon44	c.C3209A	p.A1070D	GCCCTGCTGGCCC	.	186.0	98.0	187.0	0.0	.	292	.	.	Atlas-SNP
XIRP1	165904	hgsc.bcm.edu	hg19	3	39226567	39226567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	XIRP1	NM_194293	exon2	c.C4370A	p.A1457D	TCAGGGGCCCCTT	.	54.0	23.0	83.0	0.0	.	173	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266113	41266113	+	Missense_Mutation	SNP	C	C	G	rs121913403	bycluster	TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	CTNNB1,gallbladder,other,0,1	CTNNB1	NM_001098209	exon3	c.C110G	p.S37C	TCCATTCTGGTGC	.	115.0	49.0	181.0	0.0	.	4904	.	.	Atlas-SNP
COL7A1	1294	hgsc.bcm.edu	hg19	3	48624098	48624098	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	COL7A1	NM_000094	exon25	c.C3301T	p.R1101W	AGGGCCGATGACT	.	90.0	4.0	140.0	0.0	.	320	.	.	Atlas-SNP
ACOX2	8309	hgsc.bcm.edu	hg19	3	58517052	58517052	+	Missense_Mutation	SNP	G	G	T	rs75760511	bycluster	TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ACOX2	NM_003500	exon7	c.C745A	p.Q249K	CTGTTTGATCAAA	.	65.0	26.0	99.0	0.0	.	53	.	.	Atlas-SNP
SENP7	57337	hgsc.bcm.edu	hg19	3	101136470	101136470	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	SENP7	NM_020654	exon5	c.A449G	p.E150G	AGAGGTTCTAATT	.	129.0	34.0	91.0	0.0	.	170	.	.	Atlas-SNP
ZNF518B	85460	hgsc.bcm.edu	hg19	4	10445315	10445315	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ZNF518B	NM_053042	exon3	c.C2638G	p.L880V	TGGAAAGCAGTCT	.	39.0	5.0	82.0	0.0	.	116	.	.	Atlas-SNP
POC5	134359	hgsc.bcm.edu	hg19	5	74998430	74998430	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	POC5	NM_001099271	exon5	c.G513A	p.K171K	CCGTACCTTAAGA	.	92.0	27.0	69.0	0.0	.	82	.	.	Atlas-SNP
PCDHA1	56147	hgsc.bcm.edu	hg19	5	140167835	140167835	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	PCDHA1	NM_031410	exon1	c.C1960G	p.H654D	AAGGATCACGGTG	.	61.0	38.0	58.0	0.0	.	387	.	.	Atlas-SNP
PCDHB16	57717	hgsc.bcm.edu	hg19	5	140562669	140562669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	PCDHB16	NM_020957	exon1	c.C535T	p.R179W	CATTTCCGGGTTC	.	78.0	16.0	64.0	0.0	.	159	.	.	Atlas-SNP
ATP10B	23120	hgsc.bcm.edu	hg19	5	160047535	160047535	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ATP10B	NM_025153	exon15	c.G2235T	p.Q745H	AGTCACCTGCTCA	.	179.0	50.0	198.0	0.0	.	201	.	.	Atlas-SNP
PHF3	23469	hgsc.bcm.edu	hg19	6	64401788	64401788	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	PHF3	NM_015153	exon4	c.C2351G	p.T784S	CAGATACTTTGGA	.	215.0	104.0	142.0	0.0	.	191	.	.	Atlas-SNP
TAAR2	9287	hgsc.bcm.edu	hg19	6	132938951	132938951	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	TAAR2	NM_001033080	exon2	c.T394G	p.F132V	GATGAAAAATGGA	.	143.0	9.0	122.0	0.0	.	45	.	.	Atlas-SNP
IL6	3569	hgsc.bcm.edu	hg19	7	22767222	22767222	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	IL6	NM_000600	exon2	c.T179A	p.I60N	GGTACATCCTCGA	.	84.0	56.0	122.0	0.0	.	30	.	.	Atlas-SNP
ZSCAN21	7589	hgsc.bcm.edu	hg19	7	99662023	99662023	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ZSCAN21	NM_145914	exon4	c.G1205C	p.G402A	ATGCGGGCCTCAG	.	62.0	19.0	60.0	0.0	.	29	.	.	Atlas-SNP
PRRT4	401399	hgsc.bcm.edu	hg19	7	127999248	127999248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	PRRT4	NM_001174164	exon4	c.G712A	p.E238K	TAGTTTCACCTGG	.	115.0	71.0	147.0	0.0	.	31	.	.	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	hg19	8	3216738	3216738	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	CSMD1	NM_033225	exon21	c.C3240T	p.A1080A	CTTGGTGGCACCT	.	156.0	41.0	118.0	0.0	.	1469	.	.	Atlas-SNP
ANK1	286	hgsc.bcm.edu	hg19	8	41554074	41554074	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ANK1	NM_001142446	exon27	c.G2890C	p.G964R	AACCACCCCGGGC	.	69.0	23.0	90.0	0.0	.	497	.	.	Atlas-SNP
ATAD2	29028	hgsc.bcm.edu	hg19	8	124340448	124340448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ATAD2	NM_014109	exon25	c.G3850A	p.D1284N	TTTCATCAGAAAT	.	67.0	17.0	53.0	0.0	.	160	.	.	Atlas-SNP
PHF2	5253	hgsc.bcm.edu	hg19	9	96416768	96416768	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	PHF2	NM_005392	exon7	c.C863G	p.S288C	CTGCCTCTAACCA	.	59.0	40.0	80.0	0.0	.	113	.	.	Atlas-SNP
ARID5B	84159	hgsc.bcm.edu	hg19	10	63851284	63851284	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ARID5B	NM_032199	exon10	c.T2062C	p.S688P	ATCATGTCCCCAC	.	159.0	10.0	143.0	0.0	.	125	.	.	Atlas-SNP
C10orf76	79591	hgsc.bcm.edu	hg19	10	103766310	103766310	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	C10orf76,colon,carcinoma,0,1	C10orf76	NM_024541	exon14	c.G1035A	p.P345P	GGAAGGCGGTGTG	.	60.0	3.0	88.0	1.0	.	48	.	.	Atlas-SNP
SLC29A2	3177	hgsc.bcm.edu	hg19	11	66135014	66135014	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	SLC29A2	NM_001532	exon7	c.T654C	p.F218F	GCGGGCAAACTTC	.	62.0	56.0	131.0	0.0	.	24	.	.	Atlas-SNP
SLCO1C1	53919	hgsc.bcm.edu	hg19	12	20858984	20858984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	SLCO1C1	NM_017435	exon4	c.C373T	p.L125F	ACACTGCTCATTG	.	89.0	19.0	57.0	0.0	.	216	.	.	Atlas-SNP
SMUG1	23583	hgsc.bcm.edu	hg19	12	54576393	54576393	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	SMUG1	NM_001243790	exon4	c.A300C	p.E100D	GCTTACTTCCCCA	.	73.0	20.0	74.0	0.0	.	18	.	.	Atlas-SNP
CCDC41	51134	hgsc.bcm.edu	hg19	12	94703723	94703723	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	CCDC41	NM_016122	exon16	c.A1972T	p.M658L	GTTCCATGCTTGG	.	147.0	57.0	170.0	0.0	.	59	.	.	Atlas-SNP
CCDC53	51019	hgsc.bcm.edu	hg19	12	102439885	102439885	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	CCDC53	NM_016053	exon3	c.C163G	p.L55V	GTGAAAGGTCTGC	.	194.0	108.0	248.0	0.0	.	14	.	.	Atlas-SNP
STAB2	55576	hgsc.bcm.edu	hg19	12	104048376	104048376	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	STAB2	NM_017564	exon13	c.T1451C	p.V484A	AGAAGGTAAAAAT	.	140.0	41.0	158.0	0.0	.	370	.	.	Atlas-SNP
TCHP	84260	hgsc.bcm.edu	hg19	12	110353220	110353220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	TCHP	NM_001143852	exon12	c.C1333T	p.R445W	GAGCGCCGGCTGC	.	98.0	4.0	110.0	0.0	.	45	.	.	Atlas-SNP
STX2	2054	hgsc.bcm.edu	hg19	12	131285985	131285985	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	STX2	NM_194356	exon7	c.G512C	p.G171A	GGCTTCCCGCTCT	.	150.0	12.0	165.0	0.0	.	66	.	.	Atlas-SNP
PCCA	5095	hgsc.bcm.edu	hg19	13	100925472	100925472	+	Silent	SNP	C	C	A	rs138149179	bycluster;by1000genomes;alternate_allele	TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	PCCA	NM_001178004	exon12	c.C937A	p.R313R	GAGACTCGAAGAG	.	179.0	57.0	88.0	0.0	.	59	.	C|1.000;T|0.000	Atlas-SNP
MYO16	23026	hgsc.bcm.edu	hg19	13	109707405	109707405	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	MYO16	NM_001198950	exon26	c.G3060A	p.K1020K	AAAAAAGAAAGGA	.	570.0	366.0	336.0	0.0	.	285	.	.	Atlas-SNP
RASA3	22821	hgsc.bcm.edu	hg19	13	114751254	114751254	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	RASA3,NS,carcinoma,0,1	RASA3	NM_007368	exon23	c.A2261C	p.K754T	ACAGATTTGCTCC	.	149.0	89.0	117.0	0.0	.	83	.	.	Atlas-SNP
OR4M1	441670	hgsc.bcm.edu	hg19	14	20249255	20249255	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	OR4M1	NM_001005500	exon1	c.C774A	p.Y258X	CATCTACATTTAT	.	368.0	82.0	355.0	0.0	.	104	.	.	Atlas-SNP
EMC7	56851	hgsc.bcm.edu	hg19	15	34376643	34376643	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	.	NM_020154	exon5	c.G621A	p.L207L	ATCAGGCAACTCA	.	151.0	44.0	154.0	0.0	.	.	.	.	Atlas-SNP
PLA2G4D	283748	hgsc.bcm.edu	hg19	15	42378519	42378519	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	PLA2G4D	NM_178034	exon4	c.T279C	p.Y93Y	CTCATCATAGATG	.	50.0	30.0	65.0	0.0	.	72	.	.	Atlas-SNP
ISG20	3669	hgsc.bcm.edu	hg19	15	89182609	89182609	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ISG20	NM_002201	exon2	c.C12T	p.S4S	TGGGAGCCGTGAG	.	41.0	29.0	52.0	0.0	.	17	.	.	Atlas-SNP
ANKRD11	29123	hgsc.bcm.edu	hg19	16	89350329	89350329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ANKRD11	NM_001256183	exon9	c.C2621T	p.A874V	AGCTTGGCCACAG	.	81.0	21.0	74.0	0.0	.	195	.	.	Atlas-SNP
C16orf55	124045	hgsc.bcm.edu	hg19	16	89724816	89724816	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	C16orf55	NM_001271910	exon2	c.A198T	p.A66A	GCCGGCAGCTTCG	.	39.0	24.0	72.0	0.0	.	6	.	.	Atlas-SNP
NUP88	4927	hgsc.bcm.edu	hg19	17	5290351	5290351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	NUP88	NM_002532	exon15	c.C1996A	p.Q666K	TCAGCTGTAATTC	.	46.0	43.0	74.0	0.0	.	47	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7577538	7577538	+	Missense_Mutation	SNP	C	C	T	rs11540652	bycluster	TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	TP53_ENST00000545858,NS,adenocarcinoma,0,4	TP53	NM_000546	exon7	c.G743A	p.R248Q	GGCCTCCGGTTCA	.	46.0	42.0	102.0	0.0	.	33396	.	.	Atlas-SNP
KANSL1	284058	hgsc.bcm.edu	hg19	17	44109414	44109414	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	.	NM_001193466	exon14	c.A3089G	p.Q1030R	CTTACCTGTTCAT	.	88.0	30.0	64.0	0.0	.	.	.	.	Atlas-SNP
OTOP2	92736	hgsc.bcm.edu	hg19	17	72926856	72926856	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	OTOP2	NM_178160	exon6	c.G1126C	p.A376P	GGTGCCGCCCTGG	.	130.0	68.0	122.0	0.0	.	81	.	.	Atlas-SNP
DNM2	1785	hgsc.bcm.edu	hg19	19	10906053	10906053	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	DNM2	NM_001005361	exon9	c.G1134T	p.E378D	GATGGAGTTTGAC	.	45.0	29.0	53.0	0.0	.	175	.	.	Atlas-SNP
PRNP	5621	hgsc.bcm.edu	hg19	20	4680289	4680289	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	PRNP,NS,carcinoma,0,2	PRNP	NM_000311	exon2	c.C423T	p.F141F	ACATTTCGGCAGT	.	92.0	23.0	115.0	0.0	.	31	.	.	Atlas-SNP
PDRG1	81572	hgsc.bcm.edu	hg19	20	30538175	30538175	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	PDRG1	NM_030815	exon2	c.A103G	p.T35A	TTTTAGTGTCCAG	.	66.0	44.0	66.0	0.0	.	17	.	.	Atlas-SNP
SLA2	84174	hgsc.bcm.edu	hg19	20	35269783	35269783	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	SLA2	.	.	.	.	GAAATCTGAAAGA	.	48.0	26.0	48.0	0.0	.	12	.	.	Atlas-SNP
ZSWIM1	90204	hgsc.bcm.edu	hg19	20	44511960	44511960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ZSWIM1	NM_080603	exon2	c.C729A	p.H243Q	GGCTCACCGCTGG	.	41.0	10.0	70.0	0.0	.	35	.	.	Atlas-SNP
NCOA3	8202	hgsc.bcm.edu	hg19	20	46265070	46265070	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	NCOA3	NM_001174088	exon12	c.A1970G	p.K657R	GTTGTAAAGAATC	.	93.0	58.0	126.0	0.0	.	156	.	.	Atlas-SNP
ZNF831	128611	hgsc.bcm.edu	hg19	20	57829551	57829551	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	ZNF831	NM_178457	exon5	c.A4787G	p.Y1596C	GCCAGTATGGGTG	.	194.0	62.0	233.0	0.0	.	287	.	.	Atlas-SNP
TMPRSS15	5651	hgsc.bcm.edu	hg19	21	19704474	19704474	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	TMPRSS15	NM_002772	exon14	c.T1581C	p.P527P	CTCAAAAGGTCCT	.	87.0	5.0	93.0	0.0	.	189	.	.	Atlas-SNP
IQSEC2	23096	hgsc.bcm.edu	hg19	X	53277343	53277343	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	IQSEC2	NM_001111125	exon7	c.G2535A	p.R845R	CTGAACCCGGATA	.	88.0	79.0	121.0	0.0	.	195	.	.	Atlas-SNP
SLIT2	9353	hgsc.bcm.edu	hg19	4	20490566	20490566	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	SLIT2	NM_004787	exon8	c.735delT	p.H245fs	.	.	101.0	38.0	189.0	0.0	.	290	.	.	Atlas-Indel,Pindel
SLC5A8	160728	hgsc.bcm.edu	hg19	12	101561932	101561932	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	SLC5A8	NM_145913	exon11	c.1263delT	p.G421fs	.	.	204.0	59.0	232.0	0.0	.	102	.	.	Atlas-Indel,Pindel
HLA-DMB	3109	hgsc.bcm.edu	hg19	6	32906517	32906518	+	Frame_Shift_Ins	INS	-	-	GCCCATT	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	HLA-DMB	NM_002118	exon2	c.281_282insAATGGGC	p.L94fs	.	.	153.0	45.0	150.0	0.0	.	38	.	.	Atlas-Indel,Pindel
SFMBT2	57713	hgsc.bcm.edu	hg19	10	7205790	7205790	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	SFMBT2	NM_001029880	exon21	c.2628delG	p.K876fs	.	.	68.0	37.0	94.0	0.0	.	209	.	.	Atlas-Indel,Pindel
HSD3B7	80270	hgsc.bcm.edu	hg19	16	30997473	30997473	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-UB-A7MC-01A-11D-A33Q-10	TCGA-UB-A7MC-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7021c007-2dca-4528-a727-24cc186289b5	0856f8bb-d4eb-4f86-9bae-e349845c39dc	.	HSD3B7	NM_001142778	exon3	c.269delT	p.V90fs	.	.	160.0	43.0	215.0	0.0	.	33	.	.	Atlas-Indel,Pindel