Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
UBE4B	10277	hgsc.bcm.edu	hg19	1	10211424	10211424	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	UBE4B	NM_001105562	exon21	c.A2731G	p.I911V	CAGGATATTGTGA	.	96.0	84.0	146.0	0.0	.	233	.	.	Atlas-SNP
EFCAB14	9813	hgsc.bcm.edu	hg19	1	47150244	47150244	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	.	NM_014774	exon9	c.A1105G	p.K369E	TTAGCTTGGATAC	.	49.0	37.0	70.0	0.0	.	.	.	.	Atlas-SNP
C1orf51	148523	hgsc.bcm.edu	hg19	1	150255908	150255908	+	Silent	SNP	A	A	G	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	C1orf51	NM_144697	exon1	c.A231G	p.P77P	TACACCATCTCAT	.	304.0	141.0	155.0	0.0	.	35	.	.	Atlas-SNP
GON4L	54856	hgsc.bcm.edu	hg19	1	155735915	155735915	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	GON4L	NM_001037533	exon21	c.C3349T	p.R1117W	GTCTCCGTCTCAC	.	294.0	16.0	141.0	0.0	.	392	.	.	Atlas-SNP
ETV3	2117	hgsc.bcm.edu	hg19	1	157095415	157095415	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	ETV3	NM_001145312	exon5	c.C757T	p.P253S	GGCCAGGGATTGG	.	355.0	74.0	197.0	0.0	.	50	.	.	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	hg19	1	158607950	158607950	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	SPTA1	NM_003126	exon36	c.A5062C	p.K1688Q	TATCTTTTTTCTT	.	122.0	29.0	88.0	0.0	.	720	.	.	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	hg19	1	181754899	181754899	+	Silent	SNP	G	G	A	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	CACNA1E,NS,carcinoma,0,1	CACNA1E	NM_001205293	exon43	c.G5730A	p.E1910E	TCAGGAGATCATT	.	357.0	99.0	195.0	0.0	.	778	.	.	Atlas-SNP
NCOA1	8648	hgsc.bcm.edu	hg19	2	24930641	24930641	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	NCOA1	NM_147223	exon11	c.C2302G	p.L768V	CTGAGCCTGGATG	.	303.0	117.0	380.0	1.0	.	210	.	.	Atlas-SNP
TUBA3D	113457	hgsc.bcm.edu	hg19	2	132238155	132238155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	TUBA3D	NM_080386	exon4	c.G889A	p.E297K	TGCTTCGAGCCAG	.	99.0	27.0	136.0	0.0	.	60	.	.	Atlas-SNP
FIGN	55137	hgsc.bcm.edu	hg19	2	164466190	164466190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	FIGN	NM_018086	exon3	c.C2152A	p.P718T	GGCTGGGCATAAT	.	71.0	31.0	75.0	0.0	.	106	.	.	Atlas-SNP
GORASP2	26003	hgsc.bcm.edu	hg19	2	171804921	171804921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	GORASP2	NM_015530	exon2	c.C125T	p.S42F	TTGTTTCTATTAA	.	60.0	31.0	83.0	0.0	.	40	.	.	Atlas-SNP
CCDC141	285025	hgsc.bcm.edu	hg19	2	179736264	179736264	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	CCDC141	NM_173648	exon14	c.A2095T	p.K699X	GAAGTTTTAAGTT	.	72.0	37.0	113.0	0.0	.	362	.	.	Atlas-SNP
CWC22	57703	hgsc.bcm.edu	hg19	2	180810422	180810422	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	CWC22	NM_020943	exon20	c.G2161C	p.G721R	CATGTCCCTTCTT	.	16.0	7.0	22.0	0.0	.	62	.	.	Atlas-SNP
KCNH8	131096	hgsc.bcm.edu	hg19	3	19556821	19556821	+	Missense_Mutation	SNP	G	G	A	rs373726349		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	KCNH8	NM_144633	exon14	c.G2443A	p.D815N	ATTGTTGATGGAA	.	61.0	26.0	61.0	0.0	.	189	.	.	Atlas-SNP
HTR1F	3355	hgsc.bcm.edu	hg19	3	88040639	88040639	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	HTR1F	NM_000866	exon2	c.T740A	p.L247Q	ATGTACTAGAAAA	.	54.0	48.0	114.0	0.0	.	66	.	.	Atlas-SNP
NCEH1	57552	hgsc.bcm.edu	hg19	3	172351356	172351356	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	NCEH1	NM_001146276	exon5	c.G1256A	p.G419E	ATACATCCGTGAA	.	162.0	52.0	144.0	0.0	.	63	.	.	Atlas-SNP
OPA1	4976	hgsc.bcm.edu	hg19	3	193380662	193380662	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	OPA1	NM_130837	exon26	c.G2572T	p.E858X	TGTAATGAGGAGC	.	291.0	127.0	305.0	1.0	.	79	.	.	Atlas-SNP
OPA1	4976	hgsc.bcm.edu	hg19	3	193380663	193380663	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	OPA1	NM_130837	exon26	c.A2573T	p.E858V	GTAATGAGGAGCA	.	294.0	130.0	304.0	0.0	.	79	.	.	Atlas-SNP
PACRGL	133015	hgsc.bcm.edu	hg19	4	20706145	20706145	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	PACRGL	NM_001258345	exon2	c.A41T	p.N14I	TGAAAAACAGAGC	.	672.0	233.0	687.0	1.0	.	30	.	.	Atlas-SNP
SLC9B2	133308	hgsc.bcm.edu	hg19	4	103987527	103987527	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	.	NM_178833	exon3	c.G228A	p.L76L	GCAAGCCAGCATT	.	67.0	55.0	112.0	0.0	.	.	.	.	Atlas-SNP
CDH9	1007	hgsc.bcm.edu	hg19	5	26881658	26881658	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	CDH9	NM_016279	exon12	c.C1957T	p.R653W	TGTCCCGGACATC	.	58.0	27.0	52.0	0.0	.	305	.	.	Atlas-SNP
LNPEP	4012	hgsc.bcm.edu	hg19	5	96315623	96315623	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	LNPEP	NM_005575	exon2	c.A801G	p.I267M	AAATATATCTAGT	.	147.0	80.0	140.0	0.0	.	80	.	.	Atlas-SNP
PCDHB7	56129	hgsc.bcm.edu	hg19	5	140554310	140554310	+	Missense_Mutation	SNP	G	G	C	rs17844473	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	PCDHB7	NM_018940	exon1	c.G1894C	p.E632Q	CTGAGCGAGCGCG	.	78.0	32.0	76.0	0.0	.	231	.	G|0.995;T|0.005	Atlas-SNP
GABRA6	2559	hgsc.bcm.edu	hg19	5	161116134	161116134	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	GABRA6	NM_000811	exon4	c.C405T	p.L135L	TAAACTCTTCAGA	.	119.0	25.0	143.0	0.0	.	139	.	.	Atlas-SNP
RARS	5917	hgsc.bcm.edu	hg19	5	167937603	167937603	+	Missense_Mutation	SNP	G	G	A	rs199894860		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	RARS	NM_002887	exon12	c.G1364A	p.R455H	AAACACGTTCGGG	.	287.0	19.0	266.0	0.0	.	58	.	G|0.999;A|0.001	Atlas-SNP
HDGFL1	154150	hgsc.bcm.edu	hg19	6	22570024	22570024	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	HDGFL1	NM_138574	exon1	c.G220A	p.G74S	AGGCGCGGCTTCA	.	108.0	53.0	89.0	0.0	.	33	.	.	Atlas-SNP
ELOVL4	6785	hgsc.bcm.edu	hg19	6	80629233	80629233	+	Silent	SNP	G	G	T	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	ELOVL4	NM_022726	exon5	c.C573A	p.I191I	CACATGGATAAAG	.	139.0	53.0	130.0	0.0	.	46	.	.	Atlas-SNP
ELOVL4	6785	hgsc.bcm.edu	hg19	6	80629234	80629234	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	ELOVL4	NM_022726	exon5	c.T572A	p.I191N	ACATGGATAAAGG	.	138.0	51.0	131.0	0.0	.	46	.	.	Atlas-SNP
FAM26E	254228	hgsc.bcm.edu	hg19	6	116837131	116837131	+	Silent	SNP	G	G	T	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	FAM26E	NM_153711	exon2	c.G909T	p.V303V	CCTTGTGGGTACT	.	59.0	8.0	40.0	0.0	.	26	.	.	Atlas-SNP
HOXA7	3204	hgsc.bcm.edu	hg19	7	27196120	27196120	+	Silent	SNP	C	C	A	rs201461196	alternate_allele	TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	HOXA7	NM_006896	exon1	c.G45T	p.T15T	CCCCGCCGTATAT	.	216.0	88.0	203.0	0.0	.	34	.	C|0.999;T|0.001	Atlas-SNP
CACNA2D1	781	hgsc.bcm.edu	hg19	7	81599250	81599250	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	CACNA2D1	NM_000722	exon28	c.A2255T	p.Y752F	CTTTTATAGAAGC	.	88.0	37.0	88.0	0.0	.	191	.	.	Atlas-SNP
CACNA2D1	781	hgsc.bcm.edu	hg19	7	81599275	81599275	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	CACNA2D1	NM_000722	exon28	c.C2230T	p.P744S	TCTCTGGGTTTTC	.	83.0	33.0	90.0	0.0	.	191	.	.	Atlas-SNP
CACNA2D1	781	hgsc.bcm.edu	hg19	7	81599276	81599276	+	Silent	SNP	G	G	A	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	CACNA2D1	NM_000722	exon28	c.C2229T	p.N743N	CTCTGGGTTTTCT	.	82.0	32.0	89.0	0.0	.	191	.	.	Atlas-SNP
CACNA2D1	781	hgsc.bcm.edu	hg19	7	81599277	81599277	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	CACNA2D1	NM_000722	exon28	c.A2228G	p.N743S	TCTGGGTTTTCTT	.	81.0	32.0	89.0	0.0	.	191	.	.	Atlas-SNP
PPP1R3A	5506	hgsc.bcm.edu	hg19	7	113519477	113519477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	PPP1R3A	NM_002711	exon4	c.C1670T	p.A557V	TTACTAGCTCCAA	.	131.0	66.0	97.0	0.0	.	317	.	.	Atlas-SNP
SLC4A2	6522	hgsc.bcm.edu	hg19	7	150767561	150767561	+	Silent	SNP	A	A	T	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	SLC4A2	NM_003040	exon11	c.A1467T	p.P489P	GCCTCCAGCACCA	.	96.0	57.0	89.0	0.0	.	98	.	.	Atlas-SNP
MMP16	4325	hgsc.bcm.edu	hg19	8	89128908	89128908	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	MMP16,rectum,carcinoma,+1,1	MMP16	NM_005941	exon6	c.C911T	p.P304L	ACTGTCGGTAGAG	.	238.0	77.0	195.0	1.0	.	176	.	.	Atlas-SNP
COL22A1	169044	hgsc.bcm.edu	hg19	8	139890313	139890313	+	Missense_Mutation	SNP	C	C	T	rs375895986		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	COL22A1	NM_152888	exon3	c.G338A	p.G113D	GTGTTGCCCCCGT	.	118.0	33.0	80.0	0.0	.	390	.	.	Atlas-SNP
LURAP1L	286343	hgsc.bcm.edu	hg19	9	12821394	12821394	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	.	NM_203403	exon2	c.A322G	p.R108G	AACCTCAGAGCCA	.	47.0	23.0	48.0	0.0	.	.	.	.	Atlas-SNP
PRRC2B	84726	hgsc.bcm.edu	hg19	9	134334701	134334701	+	Silent	SNP	G	G	A	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	PRRC2B	NM_013318	exon10	c.G1362A	p.P454P	GCCACCGCCCAGG	.	76.0	13.0	100.0	0.0	.	266	.	.	Atlas-SNP
BICC1	80114	hgsc.bcm.edu	hg19	10	60577443	60577443	+	Silent	SNP	G	G	C	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	BICC1	NM_001080512	exon19	c.G2655C	p.L885L	CAAACTGGGCCTG	.	144.0	8.0	101.0	0.0	.	121	.	.	Atlas-SNP
HK1	3098	hgsc.bcm.edu	hg19	10	71119657	71119657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	HK1	NM_033498	exon6	c.G243T	p.K81N	AGAAAAGGGAGAT	.	91.0	4.0	100.0	0.0	.	170	.	.	Atlas-SNP
R3HCC1L	27291	hgsc.bcm.edu	hg19	10	99994235	99994235	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	R3HCC1L	NM_001256619	exon8	c.A2036G	p.D679G	TGGATGATACACA	.	116.0	71.0	106.0	0.0	.	3	.	.	Atlas-SNP
INPP5F	22876	hgsc.bcm.edu	hg19	10	121587247	121587247	+	Silent	SNP	T	T	C	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	INPP5F	NM_014937	exon20	c.T3354C	p.L1118L	TGAACTTAAAAAG	.	130.0	64.0	100.0	0.0	.	112	.	.	Atlas-SNP
GPR123	84435	hgsc.bcm.edu	hg19	10	134942342	134942342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	GPR123	NM_001083909	exon7	c.C1010T	p.A337V	GGGCCGCGCTGGG	.	110.0	35.0	63.0	0.0	.	118	.	.	Atlas-SNP
OR52J3	119679	hgsc.bcm.edu	hg19	11	5068137	5068137	+	Missense_Mutation	SNP	G	G	T	rs2500017	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	OR52J3	NM_001001916	exon1	c.G382T	p.V128F	GTGGCCGTCTGTG	.	94.0	36.0	72.0	0.0	.	77	.	G|0.493;A|0.507	Atlas-SNP
A2M	2	hgsc.bcm.edu	hg19	12	9248257	9248257	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	A2M	NM_000014	exon16	c.C1891A	p.P631T	GCCCAGGGAAGCC	.	83.0	36.0	99.0	0.0	.	180	.	.	Atlas-SNP
BHLHE41	79365	hgsc.bcm.edu	hg19	12	26275005	26275005	+	Silent	SNP	A	A	T	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	BHLHE41	NM_030762	exon5	c.T1443A	p.A481A	TCAGGGAGCTTCC	.	135.0	54.0	135.0	0.0	.	20	.	.	Atlas-SNP
TM7SF3	51768	hgsc.bcm.edu	hg19	12	27133508	27133508	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	TM7SF3	NM_016551	exon8	c.A1027G	p.K343E	CATACTTGATAGG	.	62.0	14.0	78.0	0.0	.	41	.	.	Atlas-SNP
ARID2	196528	hgsc.bcm.edu	hg19	12	46244622	46244622	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	ARID2	NM_152641	exon15	c.G2716C	p.V906L	CAGCAAGTTTCAT	.	175.0	13.0	153.0	0.0	.	311	.	.	Atlas-SNP
HOXC4	3221	hgsc.bcm.edu	hg19	12	54448087	54448087	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	HOXC4	NM_014620	exon3	c.C381T	p.S127S	CTCCAGCGCCGCC	.	103.0	85.0	155.0	0.0	.	29	.	.	Atlas-SNP
APAF1	317	hgsc.bcm.edu	hg19	12	99071268	99071268	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	APAF1	NM_181868	exon13	c.A1859G	p.H620R	TTTACCATGCCTG	.	120.0	55.0	110.0	0.0	.	111	.	.	Atlas-SNP
FAM194B	220081	hgsc.bcm.edu	hg19	13	46170693	46170693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	FAM194B	NM_182542	exon3	c.G448A	p.D150N	TATAATCTTCCTT	.	82.0	9.0	127.0	0.0	.	42	.	.	Atlas-SNP
SPERT	220082	hgsc.bcm.edu	hg19	13	46288182	46288182	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	SPERT	NM_152719	exon3	c.A1022G	p.E341G	GGGAGGAGGAGGC	.	33.0	25.0	76.0	0.0	.	54	.	.	Atlas-SNP
TM9SF2	9375	hgsc.bcm.edu	hg19	13	100172304	100172304	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	TM9SF2	NM_004800	exon3	c.A254T	p.Q85L	TTTGCCAAGCATC	.	79.0	52.0	158.0	1.0	.	52	.	.	Atlas-SNP
ATP6V1D	51382	hgsc.bcm.edu	hg19	14	67805346	67805346	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	ATP6V1D	NM_015994	exon9	c.T736C	p.F246L	ATTCAAATAGAAG	.	52.0	43.0	98.0	0.0	.	21	.	.	Atlas-SNP
TICRR	90381	hgsc.bcm.edu	hg19	15	90169017	90169017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	C15orf42,NS,carcinoma,0,1	.	NM_152259	exon20	c.G5476T	p.G1826C	GTTTCCGGTGAGT	.	86.0	4.0	81.0	0.0	.	.	.	.	Atlas-SNP
ERCC4	2072	hgsc.bcm.edu	hg19	16	14041908	14041908	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	ERCC4	NM_005236	exon11	c.A2455G	p.S819G	AAACAAAGCAAGC	.	107.0	42.0	99.0	0.0	.	100	.	.	Atlas-SNP
TCF25	22980	hgsc.bcm.edu	hg19	16	89967154	89967154	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	TCF25	NM_014972	exon12	c.C1333T	p.Q445X	GCCAGGCAGAAGG	.	42.0	35.0	60.0	0.0	.	61	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7578260	7578260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	TP53_ENST00000545858,NS,carcinoma,+1,29	TP53	NM_000546	exon6	c.G589T	p.V197L	CTTCCACTCGGAT	.	89.0	69.0	173.0	0.0	.	33396	.	.	Atlas-SNP
SPECC1	92521	hgsc.bcm.edu	hg19	17	20013852	20013852	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	SPECC1	NM_001033553	exon3	c.A260G	p.E87G	TCACGGAGAGCCG	.	175.0	78.0	146.0	0.0	.	100	.	.	Atlas-SNP
PSENEN	55851	hgsc.bcm.edu	hg19	19	36236844	36236844	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	PSENEN	NM_172341	exon2	c.C13T	p.R5X	CTGGAGCGAGTGT	.	87.0	5.0	70.0	0.0	.	16	.	.	Atlas-SNP
ZFP30	22835	hgsc.bcm.edu	hg19	19	38126594	38126594	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	ZFP30	NM_014898	exon6	c.C848A	p.A283E	AGGTGTGCATACT	.	99.0	4.0	82.0	0.0	.	68	.	.	Atlas-SNP
ZIM2	23619	hgsc.bcm.edu	hg19	19	57286077	57286077	+	Silent	SNP	A	A	G	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	ZIM2	NM_015363	exon11	c.T1563C	p.T521T	CTCAACAGTTTTC	.	125.0	55.0	98.0	0.0	.	511	.	.	Atlas-SNP
HSPA13	6782	hgsc.bcm.edu	hg19	21	15750651	15750651	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	HSPA13	NM_006948	exon3	c.G449C	p.R150P	AATAGTCGAGAGC	.	150.0	50.0	89.0	0.0	.	44	.	.	Atlas-SNP
TBL1X	6907	hgsc.bcm.edu	hg19	X	9677726	9677726	+	Silent	SNP	A	A	G	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	TBL1X	NM_001139466	exon15	c.A1365G	p.K455K	CAATAAAGAGATC	.	178.0	165.0	147.0	0.0	.	103	.	.	Atlas-SNP
MAGEB18	286514	hgsc.bcm.edu	hg19	X	26157400	26157400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	MAGEB18	NM_173699	exon2	c.G298A	p.E100K	GAAGCTGAGGGCT	.	50.0	46.0	55.0	0.0	.	67	.	.	Atlas-SNP
MAGEB16	139604	hgsc.bcm.edu	hg19	X	35820424	35820424	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	MAGEB16	NM_001099921	exon2	c.C111T	p.T37T	GAAGACCCTCCTC	.	81.0	19.0	66.0	0.0	.	64	.	.	Atlas-SNP
ITIH6	347365	hgsc.bcm.edu	hg19	X	54784679	54784679	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	.	NM_198510	exon8	c.A1828G	p.M610V	GCACCATGACCAG	.	106.0	93.0	105.0	0.0	.	.	.	.	Atlas-SNP
AR	367	hgsc.bcm.edu	hg19	X	66931524	66931524	+	Silent	SNP	C	C	A	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	AR	NM_000044	exon4	c.C2166A	p.A722A	CAAGGCCTTGCCT	.	185.0	22.0	178.0	0.0	.	249	.	.	Atlas-SNP
SLITRK2	84631	hgsc.bcm.edu	hg19	X	144904694	144904694	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	SLITRK2	NM_001144005	exon5	c.G751A	p.G251R	TTGCATGGGAAAG	.	80.0	75.0	69.0	0.0	.	221	.	.	Atlas-SNP
FAM20A	54757	hgsc.bcm.edu	hg19	17	66538937	66538937	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	FAM20A,NS,carcinoma,0,1	FAM20A	NM_017565	exon6	c.827delG	p.R276fs	.	.	68.0	26.0	63.0	0.0	.	35	.	.	Atlas-INDEL
SLC25A47	283600	hgsc.bcm.edu	hg19	14	100795930	100795932	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	SLC25A47	NM_207117	exon6	c.874_876del	p.292_292del	.	.	33.0	23.0	48.0	0.0	.	36	.	.	Atlas-INDEL
POMGNT1	55624	hgsc.bcm.edu	hg19	1	46654650	46654653	+	Frame_Shift_Del	DEL	GGCC	GGCC	-	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	GGCC	GGCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	POMGNT1	NM_001243766	exon23	c.1986_1989del	p.662_663del	.	.	25.0	23.0	39.0	0.0	.	96	.	.	Atlas-INDEL
ANKRD30B	374860	hgsc.bcm.edu	hg19	18	14772230	14772230	+	Splice_Site	DEL	A	A	-	novel		TCGA-RC-A7SH-01A-11D-A382-10	TCGA-RC-A7SH-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bd131049-2873-436b-8759-496f580bd84e	13d667d3-0fd0-4480-9de6-f626c9dc9128	.	ANKRD30B	NM_001145029	exon9	c.1329+2A>-	.	.	.	114.0	40.0	93.0	0.0	.	237	.	.	Atlas-INDEL