Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm KIAA1522 57648 hgsc.bcm.edu hg19 1 33235673 33235673 + Missense_Mutation SNP G G T novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . KIAA1522 NM_020888 exon6 c.G893T p.R298L TTGACCGTGTCTA . 37.0 17.0 36.0 0.0 . 68 . . Atlas-SNP MACF1 23499 hgsc.bcm.edu hg19 1 39748038 39748038 + Missense_Mutation SNP C C A novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . MACF1 NM_012090 exon8 c.C702A p.H234Q CATTCACCGATAC . 50.0 16.0 62.0 0.0 . 909 . . Atlas-SNP ROR1 4919 hgsc.bcm.edu hg19 1 64643503 64643503 + Silent SNP G G T novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . ROR1 NM_005012 exon9 c.G1779T p.L593L TTTTCTGCACATT . 48.0 19.0 56.0 0.0 . 113 . . Atlas-SNP USF1 7391 hgsc.bcm.edu hg19 1 161011514 161011514 + Silent SNP C C A novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . USF1 NM_001276373 exon6 c.G399T p.S133S ACTCCCCGATGTG . 48.0 28.0 53.0 0.0 . 29 . . Atlas-SNP RAB3GAP2 25782 hgsc.bcm.edu hg19 1 220406191 220406191 + Missense_Mutation SNP A A C novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . RAB3GAP2 NM_012414 exon2 c.T130G p.W44G CTTCCCAGTCTGT . 174.0 76.0 219.0 0.0 . 120 . . Atlas-SNP SNTG2 54221 hgsc.bcm.edu hg19 2 1204797 1204797 + Silent SNP G G T rs141600263 bycluster;by1000genomes;alternate_allele TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . SNTG2 NM_018968 exon9 c.G600T p.S200S CCCATCGTCACCT . 24.0 12.0 58.0 0.0 . 125 . G|1.000;A|0.000 Atlas-SNP CHRNA1 1134 hgsc.bcm.edu hg19 2 175624301 175624301 + Missense_Mutation SNP T T G novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . CHRNA1 NM_001039523 exon2 c.A104C p.Y35S CTGCTGTAGTCTT . 33.0 9.0 38.0 0.0 . 92 . . Atlas-SNP NBEAL1 65065 hgsc.bcm.edu hg19 2 204009591 204009591 + Missense_Mutation SNP G G T novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . NBEAL1 NM_001114132 exon31 c.G5030T p.C1677F AATATTGTAATTC . 81.0 29.0 103.0 0.0 . 266 . . Atlas-SNP TTLL4 9654 hgsc.bcm.edu hg19 2 219614829 219614829 + Missense_Mutation SNP A A G novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . TTLL4 NM_014640 exon15 c.A2833G p.I945V GAGGATATCATTT . 42.0 14.0 61.0 0.0 . 96 . . Atlas-SNP FYCO1 79443 hgsc.bcm.edu hg19 3 46000930 46000930 + Missense_Mutation SNP T T C novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . FYCO1 NM_024513 exon12 c.A3542G p.D1181G TTACAGTCGAGGC . 48.0 14.0 89.0 0.0 . 115 . . Atlas-SNP CADPS 8618 hgsc.bcm.edu hg19 3 62467525 62467525 + Missense_Mutation SNP G G T novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . CADPS NM_003716 exon22 c.C3046A p.P1016T CATTGGGTAGGTT . 110.0 34.0 164.0 0.0 . 387 . . Atlas-SNP EGF 1950 hgsc.bcm.edu hg19 4 110925746 110925746 + Nonsense_Mutation SNP G G T novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . EGF NM_001963 exon22 c.G3259T p.E1087X GACACTGAGGATG . 38.0 11.0 46.0 0.0 . 113 . . Atlas-SNP TLL1 7092 hgsc.bcm.edu hg19 4 166981307 166981307 + Silent SNP G G A novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . TLL1 NM_012464 exon15 c.G1974A p.V658V TTCTGTGAAGTTT . 54.0 17.0 95.0 0.0 . 194 . . Atlas-SNP SPCS3 60559 hgsc.bcm.edu hg19 4 177241334 177241334 + Missense_Mutation SNP G G A novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . SPCS3 NM_021928 exon1 c.G107A p.S36N ACAGGAGCGTCCC . 30.0 12.0 38.0 0.0 . 15 . . Atlas-SNP FAM135A 57579 hgsc.bcm.edu hg19 6 71243558 71243558 + Splice_Site SNP G G T novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . FAM135A NM_001105531 exon18 c.3377+1G>T . AATAAGGTATCTT . 63.0 16.0 65.0 0.0 . 181 . . Atlas-SNP NME8 51314 hgsc.bcm.edu hg19 7 37890296 37890296 + Nonsense_Mutation SNP A A T novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . . NM_016616 exon5 c.A157T p.K53X AAATTGAAAAATG . 88.0 24.0 97.0 0.0 . . . . Atlas-SNP KIAA1967 57805 hgsc.bcm.edu hg19 8 22471762 22471762 + Missense_Mutation SNP G G C novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . KIAA1967 NM_021174 exon9 c.G862C p.E288Q GAAAAGGAGGCAG . 23.0 15.0 70.0 0.0 . 72 . . Atlas-SNP ANK1 286 hgsc.bcm.edu hg19 8 41552758 41552758 + Missense_Mutation SNP T T C novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . ANK1 NM_001142446 exon28 c.A3175G p.K1059E GCTCCTTCCACAC . 21.0 17.0 43.0 0.0 . 497 . . Atlas-SNP NOV 4856 hgsc.bcm.edu hg19 8 120431544 120431544 + Missense_Mutation SNP G G A novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . NOV NM_002514 exon4 c.G736A p.V246M TGCATGGTGCGGC . 84.0 18.0 24.0 0.0 . 51 . . Atlas-SNP TTC18 118491 hgsc.bcm.edu hg19 10 75013758 75013758 + Missense_Mutation SNP A A G novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . TTC18 NM_145170 exon28 c.T3341C p.V1114A AAGCCAACTGTTT . 41.0 25.0 69.0 0.0 . 106 . . Atlas-SNP IDE 3416 hgsc.bcm.edu hg19 10 94267913 94267913 + Silent SNP A A G novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . IDE NM_004969 exon8 c.T1110C p.F370F AAACATAAAACCT . 111.0 41.0 170.0 0.0 . 77 . . Atlas-SNP PHRF1 57661 hgsc.bcm.edu hg19 11 592654 592654 + Silent SNP C C G novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . PHRF1 NM_020901 exon6 c.C600G p.L200L TTTGCTCTGCGAC . 26.0 8.0 40.0 0.0 . 188 . . Atlas-SNP PRKRIR 5612 hgsc.bcm.edu hg19 11 76063483 76063483 + Silent SNP C C T novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . PRKRIR NM_004705 exon5 c.G711A p.Q237Q TAGCATCTGCCTC . 313.0 200.0 176.0 0.0 . 65 . . Atlas-SNP SC5D 6309 hgsc.bcm.edu hg19 11 121177921 121177921 + Silent SNP G G A novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . . NM_001024956 exon5 c.G600A p.L200L CATCTTGGTTAAT . 80.0 22.0 201.0 0.0 . . . . Atlas-SNP KRT6B 3854 hgsc.bcm.edu hg19 12 52845422 52845422 + Silent SNP G G T novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . KRT6B NM_005555 exon1 c.C441A p.P147P GTTGAGGGGAGTC . 114.0 34.0 187.0 0.0 . 90 . . Atlas-SNP E2F7 144455 hgsc.bcm.edu hg19 12 77427753 77427753 + Missense_Mutation SNP T T G novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . E2F7 NM_203394 exon8 c.A1193C p.Q398P CAGACTTGAATCT . 67.0 36.0 113.0 0.0 . 201 . . Atlas-SNP SPRY2 10253 hgsc.bcm.edu hg19 13 80911669 80911669 + Missense_Mutation SNP C C A novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . SPRY2 NM_005842 exon2 c.G172T p.G58W TAGGCCCCTCTGT . 42.0 21.0 95.0 0.0 . 28 . . Atlas-SNP LIPC 3990 hgsc.bcm.edu hg19 15 58830682 58830682 + Missense_Mutation SNP C C T novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . LIPC NM_000236 exon2 c.C239T p.S80F ACTCCTCCCTGCC . 44.0 11.0 80.0 0.0 . 56 . . Atlas-SNP PDE8A 5151 hgsc.bcm.edu hg19 15 85610299 85610299 + Missense_Mutation SNP T T A novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . PDE8A NM_173454 exon3 c.T298A p.C100S AGGGCATGTGAAA . 41.0 17.0 61.0 0.0 . 50 . . Atlas-SNP NFAT5 10725 hgsc.bcm.edu hg19 16 69689669 69689669 + Missense_Mutation SNP T T C novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . NFAT5 NM_001113178 exon6 c.T1163C p.V388A TAGAAGTCGGCCT . 23.0 15.0 67.0 0.0 . 184 . . Atlas-SNP ABCC3 8714 hgsc.bcm.edu hg19 17 48745041 48745041 + Missense_Mutation SNP G G A novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . ABCC3 NM_003786 exon12 c.G1558A p.G520S AGGCAGGGTGAGC . 29.0 11.0 38.0 0.0 . 138 . . Atlas-SNP CD300C 10871 hgsc.bcm.edu hg19 17 72540897 72540897 + Missense_Mutation SNP A A T novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . CD300C NM_006678 exon2 c.T251A p.I84N TCCCTGATGGACA . 50.0 15.0 96.0 0.0 . 41 . . Atlas-SNP ZBTB14 7541 hgsc.bcm.edu hg19 18 5291933 5291933 + Missense_Mutation SNP A A T novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . . NM_001243702 exon4 c.T274A p.Y92N ACATGTAGTTCAG . 52.0 30.0 149.0 0.0 . . . . Atlas-SNP JUNB 3726 hgsc.bcm.edu hg19 19 12902979 12902979 + Missense_Mutation SNP C C A novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . JUNB NM_002229 exon1 c.C394A p.Q132K GAGGAGCAGGAGG . 33.0 16.0 35.0 0.0 . 14 . . Atlas-SNP LYL1 4066 hgsc.bcm.edu hg19 19 13211948 13211948 + Missense_Mutation SNP G G A novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . LYL1 NM_005583 exon2 c.C38T p.T13I GTCATGGTGGGGC . 37.0 10.0 35.0 0.0 . 17 . . Atlas-SNP CYP2A13 1553 hgsc.bcm.edu hg19 19 41594950 41594950 + Silent SNP C C T novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . CYP2A13 NM_000766 exon2 c.C297T p.S99S GTTCAGCGGGCGA . 49.0 20.0 92.0 0.0 . 90 . . Atlas-SNP PTPRT 11122 hgsc.bcm.edu hg19 20 40979316 40979316 + Missense_Mutation SNP G G T novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . PTPRT NM_007050 exon11 c.C1817A p.T606N GTGATGGTCGTGT . 40.0 18.0 48.0 0.0 . 372 . . Atlas-SNP CACNA1I 8911 hgsc.bcm.edu hg19 22 40060133 40060133 + Missense_Mutation SNP C C A novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . CACNA1I NM_021096 exon20 c.C3635A p.T1212K TCTTCACGGCCAT . 46.0 16.0 53.0 0.0 . 264 . . Atlas-SNP TTC38 55020 hgsc.bcm.edu hg19 22 46677505 46677505 + Missense_Mutation SNP A A G rs370933560 TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . TTC38 NM_017931 exon7 c.A625G p.I209V TTATCTATTAACC . 43.0 14.0 64.0 0.0 . 40 . . Atlas-SNP TBL1X 6907 hgsc.bcm.edu hg19 X 9677338 9677338 + Silent SNP C C G novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . TBL1X NM_001139466 exon14 c.C1287G p.S429S GGCATCCTGCTCG . 52.0 33.0 93.0 0.0 . 103 . . Atlas-SNP ENOX2 10495 hgsc.bcm.edu hg19 X 129813524 129813524 + Missense_Mutation SNP T T C novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . ENOX2 NM_182314 exon7 c.A539G p.Y180C GACAGATACAGGG . 49.0 43.0 83.0 0.0 . 70 . . Atlas-SNP NYAP2 57624 hgsc.bcm.edu hg19 2 226378129 226378129 + Frame_Shift_Del DEL G G - novel TCGA-RC-A7SF-01A-11D-A34Z-10 TCGA-RC-A7SF-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6704f86-2ea2-4f7c-8043-351f98123fc8 e9d14b6e-0f63-4c76-8189-1f7e8fad71db . . NM_020864 exon3 c.263delT p.V88fs . . 55.0 26.0 100.0 0.0 . . . . Atlas-Indel,Pindel