Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm TMEM51 55092 hgsc.bcm.edu hg19 1 15541674 15541674 + Missense_Mutation SNP T T A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . TMEM51 NM_018022 exon2 c.T91A p.W31R GCCATGTGGAACC . 36.0 16.0 39.0 0.0 . 28 . . Atlas-SNP TCHH 7062 hgsc.bcm.edu hg19 1 152084224 152084224 + Missense_Mutation SNP T T C novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . TCHH NM_007113 exon3 c.A1469G p.K490R TCGAGCTTCAGCC . 120.0 11.0 69.0 0.0 . 275 . . Atlas-SNP FLG 2312 hgsc.bcm.edu hg19 1 152277443 152277443 + Missense_Mutation SNP G G T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . FLG NM_002016 exon3 c.C9919A p.Q3307K ACTGCTGGTGGCG . 166.0 101.0 130.0 0.0 . 900 . . Atlas-SNP FLG 2312 hgsc.bcm.edu hg19 1 152287879 152287879 + Nonsense_Mutation SNP A A T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . FLG NM_002016 exon2 c.T54A p.Y18X TTTTGAATATTGC . 437.0 87.0 327.0 0.0 . 900 . . Atlas-SNP PYGO2 90780 hgsc.bcm.edu hg19 1 154931467 154931467 + Missense_Mutation SNP C C A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . PYGO2 NM_138300 exon3 c.G1009T p.V337L CGTTCACCTCACT . 100.0 24.0 59.0 0.0 . 32 . . Atlas-SNP INSRR 3645 hgsc.bcm.edu hg19 1 156815580 156815580 + Missense_Mutation SNP C C T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . INSRR NM_014215 exon10 c.G2005A p.D669N GCGGATCGTTGTT . 180.0 70.0 108.0 0.0 . 309 . . Atlas-SNP TRAF3IP3 80342 hgsc.bcm.edu hg19 1 209953855 209953855 + Missense_Mutation SNP C C G rs147808288 TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . TRAF3IP3 NM_025228 exon15 c.C1353G p.N451K CCCTAACGAAGTG . 121.0 26.0 98.0 0.0 . 68 . C|1.000;G|0.000 Atlas-SNP MAP10 54627 hgsc.bcm.edu hg19 1 232943321 232943321 + Missense_Mutation SNP A A G novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . . NM_019090 exon1 c.A2552G p.Y851C CTTGCTATTCTGA . 113.0 17.0 105.0 0.0 . . . . Atlas-SNP C2orf71 388939 hgsc.bcm.edu hg19 2 29294547 29294547 + Nonsense_Mutation SNP C C A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . C2orf71 NM_001029883 exon1 c.G2581T p.E861X GGGTTTCCTTGGG . 109.0 35.0 119.0 0.0 . 146 . . Atlas-SNP DNAH6 1768 hgsc.bcm.edu hg19 2 84784866 84784866 + Missense_Mutation SNP T T G novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . DNAH6 NM_001370 exon11 c.T1610G p.I537S ATGGTATTTTGGG . 165.0 37.0 159.0 0.0 . 194 . . Atlas-SNP LYPD6B 130576 hgsc.bcm.edu hg19 2 150061778 150061778 + Missense_Mutation SNP C C T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 LYPD6B,NS,carcinoma,0,2 LYPD6B NM_177964 exon4 c.C89T p.S30L AGAGTTCGGACCG . 96.0 4.0 84.0 0.0 . 25 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179593438 179593438 + Silent SNP T T C novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . TTN NM_001267550 exon66 c.A19215G p.E6405E AACACATTCCAAG . 180.0 54.0 197.0 0.0 . 18412 . . Atlas-SNP TRAK2 66008 hgsc.bcm.edu hg19 2 202250957 202250957 + Silent SNP T T C novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . TRAK2 NM_015049 exon14 c.A1947G p.A649A TCCACCTGCTGAA . 122.0 36.0 152.0 0.0 . 62 . . Atlas-SNP COL6A3 1293 hgsc.bcm.edu hg19 2 238253847 238253847 + Missense_Mutation SNP C C A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . COL6A3 NM_004369 exon33 c.G7102T p.G2368C TGTTGCCCTTGGG . 86.0 13.0 113.0 0.0 . 608 . . Atlas-SNP FANCD2 2177 hgsc.bcm.edu hg19 3 10076196 10076196 + Silent SNP G G C novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . FANCD2 NM_001018115 exon4 c.G249C p.L83L GACCCTGAGGAGA . 133.0 27.0 163.0 0.0 . 253 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41266136 41266136 + Missense_Mutation SNP T T C rs121913407 bycluster TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 CTNNB1,NS,carcinoma,0,1 CTNNB1 NM_001098209 exon3 c.T133C p.S45P GCTCCTTCTCTGA . 157.0 48.0 169.0 0.0 . 4904 . . Atlas-SNP RAD54L2 23132 hgsc.bcm.edu hg19 3 51690041 51690041 + Silent SNP G G A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . RAD54L2 NM_015106 exon19 c.G3081A p.Q1027Q TGTGCAGTCCACC . 72.0 20.0 109.0 0.0 . 94 . . Atlas-SNP KLF15 28999 hgsc.bcm.edu hg19 3 126071030 126071030 + Missense_Mutation SNP C C A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . KLF15 NM_014079 exon2 c.G736T p.V246F CCTTGACATTCTC . 141.0 38.0 137.0 0.0 . 40 . . Atlas-SNP CCDC96 257236 hgsc.bcm.edu hg19 4 7043534 7043534 + Missense_Mutation SNP C C T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . CCDC96 NM_153376 exon1 c.G1132A p.E378K TGTTCTCCAGCCG . 81.0 18.0 93.0 0.0 . 34 . . Atlas-SNP SORCS2 57537 hgsc.bcm.edu hg19 4 7725465 7725465 + Silent SNP C C T rs373781482 TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . SORCS2 NM_020777 exon19 c.C2466T p.D822D TGGGGACGGCTTC . 50.0 17.0 68.0 0.0 . 98 . . Atlas-SNP CXCL2 2920 hgsc.bcm.edu hg19 4 74964377 74964377 + Silent SNP T T C novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . CXCL2 NM_002089 exon3 c.A249G p.K83K ACAAGCTTTCTGC . 113.0 44.0 153.0 0.0 . 6 . . Atlas-SNP MTHFD2L 441024 hgsc.bcm.edu hg19 4 75040279 75040279 + Missense_Mutation SNP T T C novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . MTHFD2L NM_001144978 exon2 c.T200C p.I67T AAGAAATACAGCG . 78.0 32.0 108.0 0.0 . 41 . . Atlas-SNP FAT1 2195 hgsc.bcm.edu hg19 4 187539094 187539094 + Silent SNP A A G novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . FAT1 NM_005245 exon10 c.T8646C p.N2882N CTGGTAATTGTCT . 95.0 28.0 107.0 0.0 . 500 . . Atlas-SNP TAS2R1 50834 hgsc.bcm.edu hg19 5 9630121 9630121 + Silent SNP G G A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . TAS2R1 NM_019599 exon1 c.C24T p.I8I AAAATAGATAATG . 261.0 119.0 234.0 1.0 . 84 . . Atlas-SNP NADKD1 133686 hgsc.bcm.edu hg19 5 36219713 36219713 + Missense_Mutation SNP T T C rs376035643 TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . NADKD1 NM_001085411 exon5 c.A629G p.Y210C CCACGATAGAACT . 49.0 9.0 45.0 0.0 . 47 . . Atlas-SNP ZNF366 167465 hgsc.bcm.edu hg19 5 71756953 71756953 + Missense_Mutation SNP T T C novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . ZNF366 NM_152625 exon2 c.A371G p.Y124C GAGTCATACTTGG . 218.0 56.0 163.0 0.0 . 108 . . Atlas-SNP THBS4 7060 hgsc.bcm.edu hg19 5 79351761 79351761 + Missense_Mutation SNP A A G novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . THBS4 NM_003248 exon3 c.A446G p.Q149R GCATCCAGGTGGA . 135.0 23.0 85.0 0.0 . 82 . . Atlas-SNP PCDHB16 57717 hgsc.bcm.edu hg19 5 140564287 140564287 + Missense_Mutation SNP G G T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . PCDHB16 NM_020957 exon1 c.G2153T p.R718M GGAGCAGGGCGGC . 80.0 45.0 88.0 0.0 . 159 . . Atlas-SNP PCDHB13 56123 hgsc.bcm.edu hg19 5 140595793 140595793 + Missense_Mutation SNP C C A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . PCDHB13 NM_018933 exon1 c.C2098A p.L700I TCTTCGCTCTTCC . 60.0 28.0 65.0 0.0 . 142 . . Atlas-SNP GABRG2 2566 hgsc.bcm.edu hg19 5 161569259 161569259 + Missense_Mutation SNP G G A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . GABRG2 NM_198903 exon8 c.G979A p.V327I CTCATTGTCGTCC . 178.0 39.0 168.0 0.0 . 142 . . Atlas-SNP CLTB 1212 hgsc.bcm.edu hg19 5 175819809 175819809 + Missense_Mutation SNP A A G novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . CLTB NM_007097 exon6 c.T656C p.L219P GACATGAGCACCG . 133.0 27.0 93.0 0.0 . 17 . . Atlas-SNP HIVEP1 3096 hgsc.bcm.edu hg19 6 12122422 12122422 + Silent SNP A A T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . HIVEP1 NM_002114 exon4 c.A2394T p.P798P AAAACCAGTGGGA . 211.0 75.0 130.0 0.0 . 242 . . Atlas-SNP DEK 7913 hgsc.bcm.edu hg19 6 18258580 18258580 + Missense_Mutation SNP T T C rs147997771 TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . DEK NM_003472 exon3 c.A202G p.M68V CTTGCATTGTCAA . 281.0 89.0 218.0 0.0 . 31 . T|1.000;C|0.000 Atlas-SNP TNXB 7148 hgsc.bcm.edu hg19 6 32064613 32064613 + Silent SNP C C T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . TNXB NM_019105 exon3 c.G1017A p.T339T GCTCCGCGTACCA . 104.0 23.0 97.0 0.0 . 553 . . Atlas-SNP DSE 29940 hgsc.bcm.edu hg19 6 116720771 116720771 + Missense_Mutation SNP A A T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . DSE NM_001080976 exon2 c.A358T p.I120F GAGAACATTGAAG . 78.0 25.0 88.0 0.0 . 98 . . Atlas-SNP IGF2R 3482 hgsc.bcm.edu hg19 6 160494446 160494446 + Missense_Mutation SNP A A G novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . IGF2R NM_000876 exon34 c.A4892G p.K1631R TGGACAAGCAGAC . 88.0 25.0 100.0 0.0 . 251 . . Atlas-SNP IGF2R 3482 hgsc.bcm.edu hg19 6 160523558 160523558 + Missense_Mutation SNP T T G novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . IGF2R NM_000876 exon46 c.T6850G p.F2284V GTGGGCTTTGACA . 158.0 31.0 192.0 0.0 . 251 . . Atlas-SNP NUDCD3 23386 hgsc.bcm.edu hg19 7 44425666 44425666 + Missense_Mutation SNP C C A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . NUDCD3 NM_015332 exon6 c.G1030T p.G344C GCTGGCCTCGGAA . 66.0 19.0 75.0 0.0 . 20 . . Atlas-SNP C7orf72 100130988 hgsc.bcm.edu hg19 7 50135733 50135733 + Missense_Mutation SNP T T A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . C7orf72 NM_001161834 exon1 c.T52A p.S18T AAAAGGTCCATCC . 129.0 30.0 140.0 0.0 . 26 . . Atlas-SNP ABCB1 5243 hgsc.bcm.edu hg19 7 87168617 87168617 + Silent SNP G G T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . ABCB1 NM_000927 exon20 c.C2364A p.L788L GTATCGGAGCCGC . 46.0 10.0 29.0 0.0 . 263 . . Atlas-SNP PEG10 23089 hgsc.bcm.edu hg19 7 94293280 94293280 + Missense_Mutation SNP G G A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . PEG10 NM_001172438 exon2 c.G640A p.E214K AAGCTGGAGCGCT . 62.0 23.0 79.0 0.0 . 36 . . Atlas-SNP ATP6V0A4 50617 hgsc.bcm.edu hg19 7 138394373 138394373 + Missense_Mutation SNP G G C novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . ATP6V0A4 NM_130841 exon20 c.C2425G p.H809D ACCAGTGCAGTCG . 67.0 13.0 85.0 0.0 . 93 . . Atlas-SNP ZNF467 168544 hgsc.bcm.edu hg19 7 149462853 149462853 + Silent SNP G G A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 ZNF467,right_lower_lobe,carcinoma,0,1 ZNF467 NM_207336 exon5 c.C738T p.C246C CTCCGCGCACGGG . 116.0 30.0 113.0 1.0 . 50 . . Atlas-SNP CYP7B1 9420 hgsc.bcm.edu hg19 8 65537039 65537039 + Silent SNP C C A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . CYP7B1 NM_004820 exon2 c.G180T p.L60L TAAGTTCAGGACC . 212.0 157.0 105.0 0.0 . 94 . . Atlas-SNP FAM83H 286077 hgsc.bcm.edu hg19 8 144810754 144810754 + Missense_Mutation SNP G G A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . FAM83H NM_198488 exon5 c.C877T p.R293C CCATGCGGGCCAG . 105.0 34.0 55.0 0.0 . 68 . . Atlas-SNP SCRIB 23513 hgsc.bcm.edu hg19 8 144885835 144885835 + Silent SNP C C T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . SCRIB NM_015356 exon23 c.G3396A p.E1132E GATGCCCTCGTCT . 62.0 14.0 45.0 0.0 . 192 . . Atlas-SNP MFSD3 113655 hgsc.bcm.edu hg19 8 145735205 145735205 + Missense_Mutation SNP G G T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . MFSD3 NM_138431 exon1 c.G489T p.W163C CTCGTGGCCGCAA . 121.0 56.0 53.0 0.0 . 17 . . Atlas-SNP ZNF16 7564 hgsc.bcm.edu hg19 8 146157910 146157910 + Nonsense_Mutation SNP G G T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . ZNF16 NM_006958 exon3 c.C263A p.S88X GCCTGTGATTCCA . 500.0 48.0 239.0 0.0 . 80 . . Atlas-SNP GAPVD1 26130 hgsc.bcm.edu hg19 9 128094293 128094293 + Missense_Mutation SNP G G T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . GAPVD1 NM_015635 exon12 c.G2262T p.R754S TGTCAGGGAGGTC . 72.0 22.0 82.0 0.0 . 124 . . Atlas-SNP TMEM26 219623 hgsc.bcm.edu hg19 10 63195964 63195964 + Silent SNP T T C novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . TMEM26 NM_178505 exon2 c.A234G p.P78P TAATGATGGAACG . 40.0 12.0 56.0 0.0 . 47 . . Atlas-SNP KNDC1 85442 hgsc.bcm.edu hg19 10 135015133 135015133 + Missense_Mutation SNP G G T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . KNDC1 NM_152643 exon17 c.G3118T p.V1040L AGGTCCGTAAAAG . 112.0 35.0 101.0 0.0 . 155 . . Atlas-SNP NAT10 55226 hgsc.bcm.edu hg19 11 34152419 34152419 + Missense_Mutation SNP G G A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . NAT10 NM_024662 exon13 c.G1304A p.S435N AACAGAGCGCCCA . 60.0 16.0 58.0 0.0 . 78 . . Atlas-SNP BRMS1 25855 hgsc.bcm.edu hg19 11 66109566 66109566 + Splice_Site SNP C C A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . BRMS1 NM_015399 exon3 c.139+1G>T . GGCTCACCGGAGC . 54.0 12.0 80.0 0.0 . 42 . . Atlas-SNP NCAM1 4684 hgsc.bcm.edu hg19 11 113103884 113103884 + Missense_Mutation SNP C C T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . NCAM1 NM_001242607 exon15 c.C1616T p.P539L CTTCACCATCCAT . 78.0 22.0 80.0 0.0 . 372 . . Atlas-SNP NLRX1 79671 hgsc.bcm.edu hg19 11 119054109 119054109 + Silent SNP C C A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . NLRX1 NM_024618 exon10 c.C2889A p.V963V CGAGGTCAGGGCC . 30.0 6.0 31.0 0.0 . 128 . . Atlas-SNP ST14 6768 hgsc.bcm.edu hg19 11 130058517 130058517 + Missense_Mutation SNP G G A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . ST14 NM_021978 exon3 c.G334A p.E112K TCCACTGAGTTTG . 52.0 10.0 60.0 0.0 . 82 . . Atlas-SNP IGSF9B 22997 hgsc.bcm.edu hg19 11 133790932 133790932 + Silent SNP G G A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . IGSF9B NM_014987 exon18 c.C2688T p.N896N GTCCTCGTTCTCC . 34.0 10.0 46.0 0.0 . 290 . . Atlas-SNP AKAP3 10566 hgsc.bcm.edu hg19 12 4737115 4737115 + Missense_Mutation SNP A A T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . AKAP3 NM_006422 exon4 c.T953A p.L318Q TTCTTCAGTAGGA . 120.0 35.0 108.0 0.0 . 212 . . Atlas-SNP SLCO1B3 28234 hgsc.bcm.edu hg19 12 21008043 21008043 + Missense_Mutation SNP G G A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . SLCO1B3 NM_019844 exon4 c.G166A p.E56K CAAATAGAAAGGA . 139.0 33.0 143.0 0.0 . 151 . . Atlas-SNP TROAP 10024 hgsc.bcm.edu hg19 12 49723688 49723688 + Silent SNP C C T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . TROAP NM_005480 exon12 c.C1213T p.L405L AGGTCACTGGAGG . 127.0 8.0 121.0 0.0 . 80 . . Atlas-SNP KRT79 338785 hgsc.bcm.edu hg19 12 53223841 53223841 + Missense_Mutation SNP T T G novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . KRT79 NM_175834 exon4 c.A821C p.Q274P ATCTCCTGGGTCA . 107.0 26.0 114.0 0.0 . 78 . . Atlas-SNP AVIL 10677 hgsc.bcm.edu hg19 12 58207158 58207158 + Missense_Mutation SNP C C G novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . AVIL NM_006576 exon3 c.G190C p.G64R CCTTCCCGATCCA . 65.0 10.0 106.0 0.0 . 60 . . Atlas-SNP FAM19A2 338811 hgsc.bcm.edu hg19 12 62148740 62148740 + Missense_Mutation SNP T T C novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . FAM19A2 NM_178539 exon3 c.A172G p.I58V CTTCTATCTTGTT . 130.0 37.0 145.0 0.0 . 38 . . Atlas-SNP FGD6 55785 hgsc.bcm.edu hg19 12 95603889 95603889 + Missense_Mutation SNP T T G novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . FGD6 NM_018351 exon2 c.A1171C p.N391H CACTGTTGGATTC . 85.0 22.0 109.0 0.0 . 127 . . Atlas-SNP DNAH10 196385 hgsc.bcm.edu hg19 12 124419244 124419244 + Silent SNP C C T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . DNAH10 NM_207437 exon77 c.C13200T p.P4400P CAAACCCAAGGTG . 105.0 30.0 112.0 0.0 . 888 . . Atlas-SNP AKAP11 11215 hgsc.bcm.edu hg19 13 42876851 42876851 + Silent SNP A A T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . AKAP11 NM_016248 exon8 c.A3969T p.P1323P ATTACCACCAAGT . 132.0 24.0 193.0 0.0 . 146 . . Atlas-SNP POU4F1 5457 hgsc.bcm.edu hg19 13 79175699 79175699 + Missense_Mutation SNP C C T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 POU4F1,NS,carcinoma,0,1 POU4F1 NM_006237 exon2 c.G1111A p.E371K AGGCCTCGAGGGA . 42.0 8.0 51.0 0.0 . 43 . . Atlas-SNP SLC8A3 6547 hgsc.bcm.edu hg19 14 70634966 70634966 + Silent SNP G G A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . SLC8A3 NM_183002 exon2 c.C174T p.V58V CAGGATGACACCC . 76.0 5.0 94.0 0.0 . 234 . . Atlas-SNP TRMT61A 115708 hgsc.bcm.edu hg19 14 103996384 103996384 + Silent SNP T T A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . TRMT61A NM_152307 exon2 c.T69A p.G23G CCATGGTGCAATG . 42.0 11.0 64.0 0.0 . 15 . . Atlas-SNP TRPM1 4308 hgsc.bcm.edu hg19 15 31325061 31325061 + Missense_Mutation SNP G G A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . TRPM1 NM_001252020 exon21 c.C2834T p.A945V GAAATGGCCACGA . 126.0 29.0 170.0 0.0 . 183 . . Atlas-SNP TGM5 9333 hgsc.bcm.edu hg19 15 43552276 43552276 + Missense_Mutation SNP A A T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . TGM5 NM_201631 exon3 c.T410A p.I137N AGCAGGATGAACT . 55.0 7.0 42.0 0.0 . 88 . . Atlas-SNP CRAMP1L 57585 hgsc.bcm.edu hg19 16 1676129 1676129 + Missense_Mutation SNP A A T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . CRAMP1L NM_020825 exon2 c.A502T p.T168S TGGAGCACAGAGG . 95.0 16.0 90.0 0.0 . 60 . . Atlas-SNP SMG1 23049 hgsc.bcm.edu hg19 16 18852978 18852978 + Nonsense_Mutation SNP G G T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . SMG1 NM_015092 exon41 c.C6605A p.S2202X AGTCCTGATCTTG . 184.0 85.0 181.0 0.0 . 401 . . Atlas-SNP SLC12A4 6560 hgsc.bcm.edu hg19 16 67995581 67995581 + Missense_Mutation SNP G G C novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 SLC12A4,colon,carcinoma,+1,1 SLC12A4 NM_001145962 exon2 c.C245G p.S82W AGAGACGATACCT . 51.0 18.0 84.0 0.0 . 81 . . Atlas-SNP SRCIN1 80725 hgsc.bcm.edu hg19 17 36719591 36719591 + Silent SNP A A C novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . SRCIN1 NM_025248 exon5 c.T708G p.A236A GTTGCGAGCCTCG . 79.0 15.0 63.0 0.0 . 66 . . Atlas-SNP KRTAP4-5 85289 hgsc.bcm.edu hg19 17 39305911 39305911 + Missense_Mutation SNP G G T rs141058010 bycluster;alternate_allele TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 KRTAP4-5,NS,carcinoma,0,1 KRTAP4-5 NM_033188 exon1 c.C109A p.R37S TGGGGCGGCAGCA . 74.0 8.0 66.0 0.0 . 34 . . Atlas-SNP KRTAP4-5 85289 hgsc.bcm.edu hg19 17 39305940 39305940 + Missense_Mutation SNP T T C novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . KRTAP4-5 NM_033188 exon1 c.A80G p.Q27R GTGGTCTGGCAGC . 93.0 9.0 80.0 0.0 . 34 . . Atlas-SNP KRTAP4-5 85289 hgsc.bcm.edu hg19 17 39305941 39305941 + Missense_Mutation SNP G G T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . KRTAP4-5 NM_033188 exon1 c.C79A p.Q27K TGGTCTGGCAGCA . 94.0 9.0 80.0 0.0 . 34 . . Atlas-SNP DHX8 1659 hgsc.bcm.edu hg19 17 41590858 41590858 + Silent SNP G G T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . DHX8 NM_004941 exon17 c.G2631T p.T877T GGTGACGCCTATT . 77.0 26.0 151.0 0.0 . 98 . . Atlas-SNP GPATCH8 23131 hgsc.bcm.edu hg19 17 42552196 42552196 + Splice_Site SNP C C A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . GPATCH8 NM_001002909 exon3 c.120+1G>T . ATCTTACCGATTC . 106.0 27.0 112.0 0.0 . 114 . . Atlas-SNP NPB 256933 hgsc.bcm.edu hg19 17 79860624 79860624 + Missense_Mutation SNP A A G novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . . NM_148896 exon2 c.A378G p.X126W CGCCTGAGCCCGG . 177.0 53.0 159.0 0.0 . . . . Atlas-SNP LINGO3 645191 hgsc.bcm.edu hg19 19 2290105 2290105 + Silent SNP C C G novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . LINGO3 NM_001101391 exon2 c.G1671C p.G557G GTGCTGCCCGCGG . 120.0 29.0 166.0 0.0 . 19 . . Atlas-SNP ARHGEF18 23370 hgsc.bcm.edu hg19 19 7528840 7528840 + Silent SNP G G A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . ARHGEF18 NM_001130955 exon12 c.G2208A p.K736K CACCAAGAGTAAG . 80.0 22.0 104.0 0.0 . 129 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9088914 9088914 + Nonsense_Mutation SNP C C T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . MUC16 NM_024690 exon1 c.G2901A p.W967X CTCTGGCCAAGTT . 131.0 35.0 163.0 0.0 . 4315 . . Atlas-SNP AP1M1 8907 hgsc.bcm.edu hg19 19 16319967 16319967 + Silent SNP C C A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . AP1M1 NM_001130524 exon5 c.C525A p.V175V GGACGTCATCGAG . 122.0 25.0 144.0 0.0 . 48 . . Atlas-SNP ANKLE1 126549 hgsc.bcm.edu hg19 19 17397348 17397348 + Missense_Mutation SNP A A T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . ANKLE1 NM_152363 exon9 c.A1835T p.Q612L ACATCCAGGCCCG . 91.0 25.0 82.0 0.0 . 27 . . Atlas-SNP CEP89 84902 hgsc.bcm.edu hg19 19 33370231 33370231 + Missense_Mutation SNP C C A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . CEP89 NM_032816 exon19 c.G2189T p.R730L ATTCTTCGGTTTT . 65.0 15.0 72.0 0.0 . 82 . . Atlas-SNP HLCS 3141 hgsc.bcm.edu hg19 21 38128887 38128887 + Silent SNP C C A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . HLCS NM_000411 exon11 c.G1965T p.G655G GTTGGGCCCTTTG . 159.0 44.0 155.0 0.0 . 64 . . Atlas-SNP ENOX2 10495 hgsc.bcm.edu hg19 X 129813673 129813673 + Silent SNP T T C novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . ENOX2 NM_182314 exon7 c.A390G p.V130V CACAAATACTGTT . 121.0 65.0 148.0 0.0 . 70 . . Atlas-SNP COX3 5742 hgsc.bcm.edu hg19 MT 9925 9925 + Nonsense_Mutation SNP G G A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . . ENST00000362079 exon1 c.G719A p.W240X CCGCCTGATACTG . 32.0 30.0 12.0 0.0 . . . . Atlas-SNP TRIP12 9320 hgsc.bcm.edu hg19 2 230661327 230661327 + Frame_Shift_Del DEL G G - novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . TRIP12 NM_004238 exon24 c.3572delA p.H1191fs . . 183.0 46.0 142.0 0.0 . 207 . . Atlas-Indel,Pindel FANCM 57697 hgsc.bcm.edu hg19 14 45650881 45650882 + Frame_Shift_Ins INS - - A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . FANCM NM_020937 exon16 c.4359_4360insA p.V1453fs . . 120.0 32.0 148.0 0.0 . 225 . . Atlas-Indel,Pindel TBATA 219793 hgsc.bcm.edu hg19 10 72541762 72541764 + In_Frame_Del DEL CTT CTT - novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 CTT CTT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . . NM_152710 exon4 c.71_73del p.24_25del . . 72.0 10.0 70.0 0.0 . . . . Atlas-INDEL TF 7018 hgsc.bcm.edu hg19 3 133494329 133494330 + Frame_Shift_Del DEL GC GC - novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 GC GC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . TF NM_001063 exon15 c.1739_1740del p.580_580del . . 59.0 10.0 63.0 0.0 . 116 . . Pindel