Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
YTHDF2	51441	hgsc.bcm.edu	hg19	1	29070165	29070165	+	Silent	SNP	C	C	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	YTHDF2	NM_016258	exon4	c.C1383T	p.V461V	CAGTGTCAACGGC	.	302.0	55.0	356.0	0.0	.	47	.	.	Atlas-SNP
MACF1	23499	hgsc.bcm.edu	hg19	1	39909144	39909144	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	MACF1	NM_012090	exon76	c.A13152T	p.E4384D	AATTGAAGATTTC	.	42.0	28.0	55.0	0.0	.	909	.	.	Atlas-SNP
SEMA6C	10500	hgsc.bcm.edu	hg19	1	151111134	151111134	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	SEMA6C	NM_001178061	exon7	c.C428A	p.S143X	CTGAATGAGTTCG	.	205.0	29.0	203.0	0.0	.	70	.	.	Atlas-SNP
FCRL5	83416	hgsc.bcm.edu	hg19	1	157488260	157488260	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	FCRL5	NM_031281	exon15	c.A2771G	p.Y924C	TCTGAGTAAACCA	.	113.0	27.0	105.0	0.0	.	177	.	.	Atlas-SNP
CENPF	1063	hgsc.bcm.edu	hg19	1	214818024	214818024	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	CENPF	NM_016343	exon13	c.T5111C	p.L1704P	TCAATCTAGACAT	.	254.0	99.0	276.0	0.0	.	321	.	.	Atlas-SNP
NUP133	55746	hgsc.bcm.edu	hg19	1	229601263	229601263	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	NUP133	NM_018230	exon17	c.A2203T	p.M735L	GCAGCATATCCTG	.	56.0	18.0	59.0	0.0	.	111	.	.	Atlas-SNP
ABCB10	23456	hgsc.bcm.edu	hg19	1	229667460	229667460	+	Missense_Mutation	SNP	G	G	A	rs139689788	bycluster	TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	ABCB10,caecum,carcinoma,0,1	ABCB10	NM_012089	exon7	c.C1358T	p.S453L	AGCTCCGAGTAGA	.	103.0	18.0	158.0	1.0	.	71	.	G|1.000;A|0.000	Atlas-SNP
GNPAT	8443	hgsc.bcm.edu	hg19	1	231408132	231408132	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	GNPAT	NM_014236	exon11	c.C1597G	p.L533V	AACACACTAAAGG	.	69.0	5.0	91.0	0.0	.	73	.	.	Atlas-SNP
DISC1	27185	hgsc.bcm.edu	hg19	1	231829897	231829897	+	Silent	SNP	G	G	A	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	DISC1	NM_001164541	exon2	c.G393A	p.R131R	TGACAGGCTTAGC	.	46.0	18.0	58.0	0.0	.	207	.	.	Atlas-SNP
FAM161A	84140	hgsc.bcm.edu	hg19	2	62069387	62069387	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	FAM161A	NM_032180	exon2	c.A292C	p.K98Q	CTACTTTCTTGAA	.	78.0	31.0	80.0	0.0	.	200	.	.	Atlas-SNP
SAP130	79595	hgsc.bcm.edu	hg19	2	128757662	128757662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	SAP130	NM_001145928	exon9	c.C1154T	p.A385V	TTGGTTGCCAAAA	.	118.0	26.0	166.0	0.0	.	169	.	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	hg19	2	142012194	142012194	+	Silent	SNP	G	G	A	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	LRP1B	NM_018557	exon4	c.C360T	p.C120C	CTGTTGGCAATTG	.	57.0	12.0	64.0	0.0	.	1315	.	.	Atlas-SNP
SCRN3	79634	hgsc.bcm.edu	hg19	2	175289262	175289262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	SCRN3	NM_024583	exon7	c.C977T	p.S326L	CCAGTTCACCAAC	.	257.0	119.0	342.0	0.0	.	76	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179448455	179448455	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	TTN	NM_001267550	exon312	c.G65454T	p.E21818D	TGTGTACTCTTCC	.	106.0	20.0	125.0	0.0	.	18412	.	.	Atlas-SNP
AOX1	316	hgsc.bcm.edu	hg19	2	201462230	201462230	+	Splice_Site	SNP	T	T	G	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	AOX1	NM_001159	exon4	c.309+2T>G	.	TTCAGGTGAGGAT	.	34.0	6.0	53.0	0.0	.	152	.	.	Atlas-SNP
ABCA12	26154	hgsc.bcm.edu	hg19	2	215840618	215840618	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	ABCA12	NM_173076	exon34	c.G5272T	p.V1758F	TGGTAACAAAGAC	.	179.0	36.0	209.0	0.0	.	368	.	.	Atlas-SNP
SCN10A	6336	hgsc.bcm.edu	hg19	3	38830494	38830494	+	Silent	SNP	C	C	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	SCN10A	NM_006514	exon3	c.G423A	p.L141L	ATTAACCAAAATA	.	135.0	17.0	114.0	0.0	.	359	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266136	41266136	+	Missense_Mutation	SNP	T	T	C	rs121913407	bycluster	TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	CTNNB1,NS,carcinoma,0,1	CTNNB1	NM_001098209	exon3	c.T133C	p.S45P	GCTCCTTCTCTGA	.	168.0	86.0	147.0	0.0	.	4904	.	.	Atlas-SNP
ZBTB11	27107	hgsc.bcm.edu	hg19	3	101370476	101370476	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	ZBTB11	NM_014415	exon11	c.G2696T	p.R899L	AGAGATCGGGCAT	.	72.0	32.0	66.0	0.0	.	77	.	.	Atlas-SNP
KBTBD12	166348	hgsc.bcm.edu	hg19	3	127642047	127642047	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	KBTBD12	NM_207335	exon1	c.T143A	p.V48D	GACTGGTCCTGGC	.	286.0	52.0	323.0	0.0	.	41	.	.	Atlas-SNP
MAGEF1	64110	hgsc.bcm.edu	hg19	3	184429511	184429511	+	Silent	SNP	C	C	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	MAGEF1,colon,carcinoma,0,1	MAGEF1	NM_022149	exon1	c.G99A	p.S33S	CTCCTGCGAGGCG	.	93.0	45.0	151.0	1.0	.	27	.	.	Atlas-SNP
EVC2	132884	hgsc.bcm.edu	hg19	4	5633652	5633652	+	Silent	SNP	G	G	A	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	EVC2	NM_147127	exon11	c.C1578T	p.H526H	CTGTCTGTGAGCT	.	73.0	12.0	142.0	0.0	.	202	.	.	Atlas-SNP
WDR19	57728	hgsc.bcm.edu	hg19	4	39254852	39254852	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	WDR19	NM_025132	exon25	c.A2816G	p.E939G	ATCCTGAAAAAGC	.	88.0	24.0	135.0	0.0	.	96	.	.	Atlas-SNP
OCIAD2	132299	hgsc.bcm.edu	hg19	4	48901944	48901944	+	Splice_Site	SNP	T	T	C	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	OCIAD2	NM_152398	exon4	c.67-2A>G	.	AGGCTCTGTAAGG	.	77.0	11.0	109.0	0.0	.	16	.	.	Atlas-SNP
LPHN3	23284	hgsc.bcm.edu	hg19	4	62936333	62936333	+	Missense_Mutation	SNP	C	C	G	rs146722627	by1000genomes;alternate_allele	TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	LPHN3	NM_015236	exon23	c.C4117G	p.P1373A	CAGTCACCCCATA	.	129.0	34.0	165.0	0.0	.	800	.	C|1.000;T|0.000	Atlas-SNP
GSTCD	79807	hgsc.bcm.edu	hg19	4	106638934	106638934	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	GSTCD	NM_024751	exon2	c.A164T	p.E55V	CCAAAGAGGTGAG	.	260.0	91.0	267.0	0.0	.	69	.	.	Atlas-SNP
PITX2	5308	hgsc.bcm.edu	hg19	4	111543517	111543517	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	PITX2	NM_000325	exon1	c.G100T	p.A34S	CCATGGCTAACGG	.	442.0	92.0	518.0	0.0	.	73	.	.	Atlas-SNP
SYNPO2	171024	hgsc.bcm.edu	hg19	4	119951690	119951690	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	SYNPO2	NM_001128934	exon4	c.G1760T	p.R587I	TGAATAGAACGGC	.	138.0	25.0	135.0	0.0	.	353	.	.	Atlas-SNP
MAB21L2	10586	hgsc.bcm.edu	hg19	4	151505054	151505054	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	MAB21L2	NM_006439	exon1	c.G873A	p.W291X	GGACTGGGACGAG	.	145.0	55.0	154.0	0.0	.	53	.	.	Atlas-SNP
SEMA5A	9037	hgsc.bcm.edu	hg19	5	9227034	9227034	+	Missense_Mutation	SNP	G	G	A	rs139668453	bycluster	TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	SEMA5A	NM_003966	exon7	c.C379T	p.R127W	ATAACCGGTCGCC	.	555.0	250.0	803.0	1.0	.	236	.	G|1.000;A|0.000	Atlas-SNP
DNAH5	1767	hgsc.bcm.edu	hg19	5	13894846	13894846	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	DNAH5	NM_001369	exon16	c.G2344A	p.D782N	CTTCATCCACTTT	.	60.0	13.0	108.0	0.0	.	868	.	.	Atlas-SNP
MTMR12	54545	hgsc.bcm.edu	hg19	5	32230150	32230150	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	MTMR12	NM_001040446	exon16	c.A1978G	p.T660A	TCAGAGTGGCCAC	.	107.0	44.0	111.0	0.0	.	76	.	.	Atlas-SNP
NPR3	4883	hgsc.bcm.edu	hg19	5	32711930	32711930	+	Silent	SNP	C	C	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	NPR3	NM_000908	exon1	c.C48T	p.G16G	ACTCGGCTGGGCG	.	135.0	44.0	157.0	0.0	.	65	.	.	Atlas-SNP
DAB2	1601	hgsc.bcm.edu	hg19	5	39392502	39392502	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	DAB2	NM_001343	exon4	c.C295A	p.L99I	CAGAAAGGGAAAT	.	67.0	11.0	60.0	0.0	.	124	.	.	Atlas-SNP
MAP1B	4131	hgsc.bcm.edu	hg19	5	71496132	71496132	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	MAP1B	NM_005909	exon5	c.A6950T	p.D2317V	AGAAAGACAAGGA	.	179.0	72.0	194.0	0.0	.	243	.	.	Atlas-SNP
LYSMD3	116068	hgsc.bcm.edu	hg19	5	89815032	89815032	+	Silent	SNP	T	T	A	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	LYSMD3	NM_198273	exon3	c.A525T	p.T175T	ATTGTCTGTACAC	.	110.0	20.0	104.0	0.0	.	25	.	.	Atlas-SNP
TCOF1	6949	hgsc.bcm.edu	hg19	5	149772339	149772339	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	TCOF1	NM_001135243	exon22	c.G3586T	p.V1196L	GATGTGGTGGCGC	.	79.0	8.0	94.0	0.0	.	154	.	.	Atlas-SNP
ATP10B	23120	hgsc.bcm.edu	hg19	5	160071238	160071238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	ATP10B	NM_025153	exon9	c.C775A	p.Q259K	TGGTCTGGTCAGG	.	94.0	31.0	110.0	0.0	.	201	.	.	Atlas-SNP
CRISP1	167	hgsc.bcm.edu	hg19	6	49806179	49806179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	CRISP1	NM_001205220	exon7	c.G593A	p.C198Y	CTTGGGCAGGCTT	.	136.0	20.0	99.0	0.0	.	45	.	.	Atlas-SNP
GCM1	8521	hgsc.bcm.edu	hg19	6	52999070	52999070	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	GCM1	NM_003643	exon3	c.A128T	p.H43L	TAGATGTGTTTGG	.	149.0	17.0	137.0	0.0	.	47	.	.	Atlas-SNP
POU3F2	5454	hgsc.bcm.edu	hg19	6	99283620	99283620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	POU3F2	NM_005604	exon1	c.G871A	p.V291M	GCGGACGTGGGGC	.	135.0	27.0	168.0	0.0	.	33	.	.	Atlas-SNP
STXBP5	134957	hgsc.bcm.edu	hg19	6	147704135	147704135	+	Splice_Site	SNP	G	G	A	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	STXBP5	NM_139244	exon25	c.3306+1G>A	.	CATGAGGTACGAC	.	65.0	48.0	116.0	0.0	.	163	.	.	Atlas-SNP
HOXA4	3201	hgsc.bcm.edu	hg19	7	27170333	27170333	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	HOXA4	NM_002141	exon1	c.T20C	p.L7S	TTTATCAAAAACG	.	255.0	43.0	310.0	0.0	.	21	.	.	Atlas-SNP
URGCP	55665	hgsc.bcm.edu	hg19	7	43921551	43921551	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	URGCP	NM_001077663	exon4	c.G118T	p.E40X	TCCATTCCAAATC	.	91.0	10.0	89.0	0.0	.	170	.	.	Atlas-SNP
NACAD	23148	hgsc.bcm.edu	hg19	7	45121229	45121229	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	NACAD	NM_001146334	exon4	c.C4228A	p.Q1410K	GACTCTGCTTGGC	.	71.0	25.0	88.0	0.0	.	44	.	.	Atlas-SNP
ZNF479	90827	hgsc.bcm.edu	hg19	7	57188071	57188071	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	ZNF479	NM_033273	exon5	c.A1051G	p.K351E	AGGGTTTCTCTCT	.	272.0	117.0	350.0	0.0	.	193	.	.	Atlas-SNP
SEMA3E	9723	hgsc.bcm.edu	hg19	7	83119477	83119477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	SEMA3E	NM_012431	exon2	c.C229T	p.L77F	ATACAAGGTCCCT	.	77.0	22.0	99.0	0.0	.	125	.	.	Atlas-SNP
ZNF804B	219578	hgsc.bcm.edu	hg19	7	88963831	88963831	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	ZNF804B	NM_181646	exon4	c.G1535T	p.R512I	CTAAAAGAGAGAG	.	298.0	67.0	338.0	0.0	.	322	.	.	Atlas-SNP
PEX1	5189	hgsc.bcm.edu	hg19	7	92118609	92118609	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	PEX1	NM_000466	exon23	c.G3765C	p.E1255D	TTACAGCTCAGCA	.	115.0	15.0	97.0	0.0	.	102	.	.	Atlas-SNP
CALCR	799	hgsc.bcm.edu	hg19	7	93055707	93055707	+	Silent	SNP	G	G	A	rs138214388		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	CALCR,arm,malignant_melanoma,0,1	CALCR	NM_001164737	exon16	c.C1488T	p.I496I	AGGGATGATCTCA	.	81.0	26.0	97.0	0.0	.	200	.	.	Atlas-SNP
PODXL	5420	hgsc.bcm.edu	hg19	7	131241049	131241049	+	Missense_Mutation	SNP	G	G	A	rs201847316		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	PODXL	NM_001018111	exon1	c.C70T	p.P24S	GCGACGGCGACGA	.	125.0	7.0	170.0	0.0	.	53	.	.	Atlas-SNP
SSPO	23145	hgsc.bcm.edu	hg19	7	149480011	149480011	+	Silent	SNP	C	C	G	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	.	NM_198455	exon15	c.C1977G	p.S659S	AGCTTCCTCTGCC	.	72.0	9.0	91.0	0.0	.	.	.	.	Atlas-SNP
SSPO	23145	hgsc.bcm.edu	hg19	7	149480083	149480083	+	Silent	SNP	C	C	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	.	NM_198455	exon15	c.C2049T	p.I683I	CTACATCACCCTG	.	95.0	11.0	110.0	0.0	.	.	.	.	Atlas-SNP
GIMAP8	155038	hgsc.bcm.edu	hg19	7	150171329	150171329	+	Silent	SNP	G	G	A	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	GIMAP8,NS,carcinoma,0,2	GIMAP8	NM_175571	exon4	c.G912A	p.P304P	TGCTCCGGACATC	.	90.0	6.0	184.0	0.0	.	136	.	.	Atlas-SNP
GIMAP4	55303	hgsc.bcm.edu	hg19	7	150269493	150269493	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	GIMAP4	NM_018326	exon3	c.C335T	p.P112L	CCTCCCCAGGGCC	.	203.0	33.0	176.0	0.0	.	61	.	.	Atlas-SNP
KCNH2	3757	hgsc.bcm.edu	hg19	7	150649763	150649763	+	Missense_Mutation	SNP	G	G	A	rs199472901		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	KCNH2	NM_000238	exon6	c.C1307T	p.T436M	TCTTCCGTCTCCT	.	59.0	21.0	129.0	0.0	.	157	.	.	Atlas-SNP
EPHX2	2053	hgsc.bcm.edu	hg19	8	27369359	27369359	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	EPHX2	NM_001979	exon6	c.A667T	p.N223Y	CTTCTCAATACCC	.	61.0	35.0	122.0	0.0	.	57	.	.	Atlas-SNP
PREX2	80243	hgsc.bcm.edu	hg19	8	68950408	68950408	+	Silent	SNP	T	T	C	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	PREX2	NM_025170	exon7	c.T720C	p.T240T	CATCACTGACACC	.	115.0	11.0	105.0	0.0	.	614	.	.	Atlas-SNP
RUNX1T1	862	hgsc.bcm.edu	hg19	8	93003931	93003931	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	RUNX1T1	NM_001198679	exon7	c.C1104G	p.H368Q	GTAGTGGTGGGCA	.	166.0	32.0	182.0	0.0	.	516	.	.	Atlas-SNP
SEC16A	9919	hgsc.bcm.edu	hg19	9	139355726	139355726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	SEC16A	NM_014866	exon13	c.G4894T	p.D1632Y	AAGCATCCTGCAA	.	66.0	26.0	91.0	0.0	.	249	.	.	Atlas-SNP
ANK3	288	hgsc.bcm.edu	hg19	10	61832737	61832737	+	Silent	SNP	C	C	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	ANK3	NM_020987	exon37	c.G7902A	p.V2634V	CAGTAGCACTTTC	.	92.0	31.0	105.0	0.0	.	703	.	.	Atlas-SNP
JMJD1C	221037	hgsc.bcm.edu	hg19	10	64950795	64950795	+	Silent	SNP	G	G	C	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	JMJD1C	NM_032776	exon17	c.C6150G	p.G2050G	TGTTCTGCCATTT	.	124.0	5.0	156.0	0.0	.	347	.	.	Atlas-SNP
MGEA5	10724	hgsc.bcm.edu	hg19	10	103560098	103560098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	MGEA5	NM_012215	exon8	c.G1096A	p.E366K	TATCTTCATCACT	.	59.0	24.0	63.0	0.0	.	53	.	.	Atlas-SNP
WDR96	80217	hgsc.bcm.edu	hg19	10	105944833	105944833	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	WDR96	NM_025145	exon16	c.T2082G	p.D694E	TTGTCCATCCATT	.	87.0	17.0	82.0	0.0	.	183	.	.	Atlas-SNP
TACC2	10579	hgsc.bcm.edu	hg19	10	123844186	123844186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	TACC2	NM_206862	exon4	c.C2171T	p.P724L	ATTTTCCACCAAC	.	175.0	67.0	195.0	0.0	.	271	.	.	Atlas-SNP
SPTBN2	6712	hgsc.bcm.edu	hg19	11	66468343	66468343	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	SPTBN2	NM_006946	exon16	c.A3227T	p.D1076V	TGGAAGTCATCCA	.	39.0	8.0	75.0	0.0	.	188	.	.	Atlas-SNP
FAT3	120114	hgsc.bcm.edu	hg19	11	92624158	92624158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	FAT3	NM_001008781	exon25	c.C13553A	p.S4518Y	ATGTGTCTGCCAA	.	71.0	9.0	97.0	0.0	.	1822	.	.	Atlas-SNP
C11orf34	349633	hgsc.bcm.edu	hg19	11	112119549	112119549	+	Silent	SNP	A	A	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	C11orf34	NM_001145024	exon4	c.T597A	p.A199A	GAGAAAAGCAAGC	.	114.0	25.0	188.0	0.0	.	6	.	.	Atlas-SNP
ARHGAP32	9743	hgsc.bcm.edu	hg19	11	128840898	128840898	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	ARHGAP32	NM_001142685	exon22	c.G4168A	p.A1390T	CCCGGGCACCGTC	.	35.0	7.0	66.0	0.0	.	307	.	.	Atlas-SNP
CLEC1A	51267	hgsc.bcm.edu	hg19	12	10233967	10233967	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	CLEC1A	NM_016511	exon3	c.C260G	p.S87C	ATTTGAGAAATGG	.	145.0	54.0	191.0	0.0	.	48	.	.	Atlas-SNP
COPZ1	22818	hgsc.bcm.edu	hg19	12	54743441	54743441	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	COPZ1	NM_001271736	exon8	c.A509G	p.Q170R	TGTCTCAGGTATG	.	113.0	41.0	150.0	0.0	.	10	.	.	Atlas-SNP
OR6C4	341418	hgsc.bcm.edu	hg19	12	55945104	55945104	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	OR6C4	NM_001005494	exon1	c.A94C	p.T32P	TTCCTCACCTACA	.	178.0	64.0	178.0	0.0	.	34	.	.	Atlas-SNP
METTL1	4234	hgsc.bcm.edu	hg19	12	58163586	58163586	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	METTL1	NM_005371	exon3	c.A428G	p.K143R	AGGTGCTTCATGG	.	109.0	36.0	135.0	0.0	.	14	.	.	Atlas-SNP
TNFRSF19	55504	hgsc.bcm.edu	hg19	13	24242840	24242840	+	Silent	SNP	C	C	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	TNFRSF19	NM_018647	exon9	c.C849T	p.G283G	CGCAGGCCCAGCC	.	83.0	26.0	73.0	0.0	.	52	.	.	Atlas-SNP
COG6	57511	hgsc.bcm.edu	hg19	13	40256393	40256393	+	Silent	SNP	C	C	A	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	COG6	NM_001145079	exon8	c.C780A	p.V260V	ACCTGTCTTATAT	.	200.0	68.0	436.0	0.0	.	49	.	.	Atlas-SNP
LIG4	3981	hgsc.bcm.edu	hg19	13	108863529	108863529	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	LIG4	NM_206937	exon3	c.A88G	p.K30E	GTCCTTTACTTTT	.	104.0	17.0	99.0	0.0	.	91	.	.	Atlas-SNP
OR4K2	390431	hgsc.bcm.edu	hg19	14	20345061	20345061	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	OR4K2	NM_001005501	exon1	c.T635G	p.I212S	GTTTTATTGTTTT	.	78.0	10.0	91.0	0.0	.	97	.	.	Atlas-SNP
C14orf39	317761	hgsc.bcm.edu	hg19	14	60928094	60928094	+	Silent	SNP	C	C	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	C14orf39	NM_174978	exon13	c.G1095A	p.Q365Q	CGACCACTGATTG	.	96.0	34.0	174.0	0.0	.	79	.	.	Atlas-SNP
TMEM30B	161291	hgsc.bcm.edu	hg19	14	61747677	61747677	+	Silent	SNP	C	C	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	TMEM30B	NM_001017970	exon1	c.G189A	p.L63L	GTACTCCAGCTCC	.	34.0	12.0	38.0	0.0	.	13	.	.	Atlas-SNP
SHC4	399694	hgsc.bcm.edu	hg19	15	49255156	49255156	+	Silent	SNP	G	G	A	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	SHC4,bladder,carcinoma,0,1	SHC4	NM_203349	exon1	c.C57T	p.F19F	GTGCCCGAAGAGT	.	56.0	10.0	107.0	0.0	.	70	.	.	Atlas-SNP
MAN2C1	4123	hgsc.bcm.edu	hg19	15	75651670	75651670	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	MAN2C1	NM_001256494	exon17	c.A2058C	p.R686S	CTCACCTCTTGCA	.	75.0	19.0	122.0	0.0	.	76	.	.	Atlas-SNP
MAN2C1	4123	hgsc.bcm.edu	hg19	15	75651671	75651671	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	MAN2C1	NM_006715	exon17	c.G2044T	p.E682X	TCACCTCTTGCAC	.	76.0	19.0	123.0	0.0	.	76	.	.	Atlas-SNP
ITGAM	3684	hgsc.bcm.edu	hg19	16	31336283	31336283	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	ITGAM	NM_001145808	exon19	c.C2297T	p.P766L	AGTTTCCCTTTGA	.	57.0	10.0	48.0	0.0	.	137	.	.	Atlas-SNP
SUPT6H	6830	hgsc.bcm.edu	hg19	17	27024667	27024667	+	Silent	SNP	T	T	G	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	SUPT6H	NM_003170	exon31	c.T4239G	p.A1413A	TGTTGCTCGCTAT	.	77.0	23.0	115.0	0.0	.	165	.	.	Atlas-SNP
ACACA	31	hgsc.bcm.edu	hg19	17	35615246	35615246	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	ACACA	NM_198834	exon13	c.A1550T	p.Y517F	ACCCCATACATCA	.	216.0	38.0	232.0	0.0	.	395	.	.	Atlas-SNP
MPP2	4355	hgsc.bcm.edu	hg19	17	41975687	41975687	+	Silent	SNP	C	C	A	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	MPP2	NM_005374	exon3	c.G93T	p.L31L	CAGGTCCAGCTCT	.	97.0	16.0	130.0	0.0	.	67	.	.	Atlas-SNP
AXIN2	8313	hgsc.bcm.edu	hg19	17	63545701	63545701	+	Missense_Mutation	SNP	T	T	C	rs139274803		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	AXIN2	NM_004655	exon3	c.A893G	p.N298S	CTGTCGTTGGCGC	.	100.0	30.0	128.0	0.0	.	92	.	T|1.000;C|0.000	Atlas-SNP
H3F3B	3021	hgsc.bcm.edu	hg19	17	73775166	73775166	+	Silent	SNP	A	A	C	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	H3F3B	NM_005324	exon2	c.T90G	p.A30A	AGAGGGAGCGCTT	.	112.0	37.0	143.0	0.0	.	12	.	.	Atlas-SNP
CEP192	55125	hgsc.bcm.edu	hg19	18	13100343	13100343	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	CEP192	NM_032142	exon38	c.G6703T	p.V2235L	ACTCAAGTGGAAC	.	161.0	47.0	189.0	0.0	.	340	.	.	Atlas-SNP
GAREM	64762	hgsc.bcm.edu	hg19	18	29890207	29890207	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	.	NM_022751	exon3	c.G342C	p.K114N	AAATGCCTTAGCC	.	109.0	20.0	201.0	0.0	.	.	.	.	Atlas-SNP
MYO5B	4645	hgsc.bcm.edu	hg19	18	47364067	47364067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	MYO5B	NM_001080467	exon37	c.G4958A	p.C1653Y	TCCAGGCAGTATG	.	94.0	8.0	159.0	0.0	.	178	.	.	Atlas-SNP
ZNF443	10224	hgsc.bcm.edu	hg19	19	12542634	12542634	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	ZNF443	NM_005815	exon4	c.C352G	p.L118V	AATTAAGGGATGA	.	133.0	56.0	207.0	0.0	.	63	.	.	Atlas-SNP
CACNA1A	773	hgsc.bcm.edu	hg19	19	13387894	13387894	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	CACNA1A	NM_001127221	exon23	c.A3874G	p.M1292V	TCACCATCTCAAA	.	108.0	20.0	135.0	0.0	.	715	.	.	Atlas-SNP
COMP	1311	hgsc.bcm.edu	hg19	19	18895754	18895754	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	COMP	NM_000095	exon16	c.G1866A	p.W622X	CGCCTGCCAATAC	.	97.0	20.0	110.0	0.0	.	62	.	.	Atlas-SNP
ZNF729	100287226	hgsc.bcm.edu	hg19	19	22499578	22499578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	ZNF729	NM_001242680	exon4	c.C3359T	p.T1120M	CCCTTACGAAACA	.	51.0	24.0	56.0	0.0	.	78	.	.	Atlas-SNP
WDR87	83889	hgsc.bcm.edu	hg19	19	38380266	38380266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	WDR87	NM_031951	exon6	c.G3928A	p.V1310I	GCGGGACTACATC	.	105.0	20.0	113.0	0.0	.	191	.	.	Atlas-SNP
LIPE	3991	hgsc.bcm.edu	hg19	19	42914801	42914801	+	Silent	SNP	C	C	A	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	LIPE	NM_005357	exon2	c.G1077T	p.A359A	GAGGTGCGCCACA	.	113.0	45.0	141.0	0.0	.	83	.	.	Atlas-SNP
ARHGAP35	2909	hgsc.bcm.edu	hg19	19	47422764	47422764	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	.	NM_004491	exon1	c.G832T	p.E278X	AAGTATGAGTGGC	.	83.0	4.0	124.0	0.0	.	.	.	.	Atlas-SNP
CACNG6	59285	hgsc.bcm.edu	hg19	19	54515342	54515342	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	CACNG6	NM_145814	exon4	c.G682A	p.G228S	GGGGCCGGCCTGA	.	57.0	11.0	46.0	0.0	.	42	.	.	Atlas-SNP
ZNF135	7694	hgsc.bcm.edu	hg19	19	58579098	58579098	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	ZNF135	NM_007134	exon4	c.G1318A	p.G440R	GAGTGTGGGAAAG	.	133.0	67.0	135.0	0.0	.	159	.	.	Atlas-SNP
POFUT1	23509	hgsc.bcm.edu	hg19	20	30803178	30803178	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	POFUT1	NM_172236	exon3	c.C353A	p.P118H	ACTGGCCCCCTGA	.	174.0	22.0	143.0	0.0	.	52	.	.	Atlas-SNP
ARHGAP40	343578	hgsc.bcm.edu	hg19	20	37272355	37272355	+	Silent	SNP	G	G	A	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	ARHGAP40	NM_001164431	exon11	c.G1368A	p.L456L	ACTGCTGGAATTC	.	91.0	5.0	83.0	0.0	.	50	.	.	Atlas-SNP
MTFP1	51537	hgsc.bcm.edu	hg19	22	30823227	30823227	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	MTFP1	NM_016498	exon3	c.G265T	p.A89S	TGGCAGGCTCTAG	.	41.0	6.0	72.0	0.0	.	7	.	.	Atlas-SNP
TCF20	6942	hgsc.bcm.edu	hg19	22	42607116	42607116	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	TCF20	NM_181492	exon1	c.C4196A	p.A1399D	TGAACAGCAACAC	.	86.0	27.0	133.0	0.0	.	164	.	.	Atlas-SNP
FAM120C	54954	hgsc.bcm.edu	hg19	X	54209040	54209040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	FAM120C	NM_017848	exon1	c.G592A	p.V198M	GTCCCACGATCAG	.	88.0	45.0	80.0	0.0	.	89	.	.	Atlas-SNP
POF1B	79983	hgsc.bcm.edu	hg19	X	84600900	84600900	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	POF1B	NM_024921	exon6	c.T689A	p.L230Q	TGGCACAGTTCAT	.	83.0	34.0	74.0	0.0	.	77	.	.	Atlas-SNP
GPC4	2239	hgsc.bcm.edu	hg19	X	132548888	132548888	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	GPC4	NM_001448	exon1	c.C106G	p.L36V	CGTAAAGACGTCG	.	138.0	43.0	162.0	0.0	.	58	.	.	Atlas-SNP
PNMA3	29944	hgsc.bcm.edu	hg19	X	152225496	152225496	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	PNMA3	NM_013364	exon2	c.G84C	p.E28D	CCCCGAGGACTGT	.	121.0	47.0	140.0	0.0	.	81	.	.	Atlas-SNP
ARHGAP4	393	hgsc.bcm.edu	hg19	X	153174961	153174961	+	Silent	SNP	G	G	A	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	ARHGAP4	NM_001164741	exon21	c.C2563T	p.L855L	TCTGCAGCCCTGC	.	114.0	87.0	142.0	0.0	.	103	.	.	Atlas-SNP
TTF1	7270	hgsc.bcm.edu	hg19	9	135277372	135277373	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	TTF1	NM_007344	exon2	c.837_838insA	p.K279fs	.	.	68.0	16.0	78.0	0.0	.	82	.	.	Atlas-INDEL
STARD5	80765	hgsc.bcm.edu	hg19	15	81616431	81616432	+	Frame_Shift_Ins	INS	-	-	CGGGTCCATTGCGT	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	STARD5	NM_181900	exon1	c.10_11insACGCAATGGACCCG	p.A4fs	.	.	83.0	14.0	143.0	0.0	.	20	.	.	Atlas-INDEL
CROT	54677	hgsc.bcm.edu	hg19	7	86978406	86978406	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	.	CROT	NM_001243745	exon3	c.21delA	p.K7fs	.	.	376.0	143.0	528.0	0.0	.	81	.	.	Atlas-INDEL
TP53	7157	hgsc.bcm.edu	hg19	17	7577112	7577113	+	Frame_Shift_Ins	INS	-	-	ACAA	novel		TCGA-NI-A8LF-01A-11D-A35Z-10	TCGA-NI-A8LF-10A-01D-A35Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	591e019d-1317-490a-b687-1d8f75118e1f	9145d9de-76f8-4fbf-863f-d7f80611dcd9	TP53_ENST00000455263,NS,NS,+1,2	TP53	NM_001126112	exon8	c.826_827insTTGT	p.A276fs	.	.	58.0	36.0	138.0	0.0	.	33396	.	.	Atlas-INDEL