Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
TNFRSF8	943	hgsc.bcm.edu	hg19	1	12175637	12175637	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	TNFRSF8	NM_001243	exon8	c.A797C	p.D266A	TAGATGACCTTGT	.	103.0	34.0	100.0	0.0	.	70	.	.	Atlas-SNP
LRP8	7804	hgsc.bcm.edu	hg19	1	53727742	53727742	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	LRP8	NM_004631	exon12	c.G1912C	p.E638Q	TCACCTCAAACAC	.	211.0	76.0	205.0	0.0	.	58	.	.	Atlas-SNP
IL12RB2	3595	hgsc.bcm.edu	hg19	1	67833556	67833556	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	IL12RB2	NM_001559	exon10	c.A1307G	p.N436S	TGGACAACATTCT	.	159.0	39.0	140.0	0.0	.	94	.	.	Atlas-SNP
CTSK	1513	hgsc.bcm.edu	hg19	1	150778408	150778408	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CTSK	NM_000396	exon4	c.G328T	p.E110X	CCCATTCTGGGAT	.	134.0	59.0	204.0	0.0	.	27	.	.	Atlas-SNP
CHRNB2	1141	hgsc.bcm.edu	hg19	1	154543798	154543798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CHRNB2	NM_000748	exon5	c.C499A	p.Q167K	GACCAGCAGAACT	.	278.0	16.0	274.0	0.0	.	74	.	.	Atlas-SNP
RUSC1	23623	hgsc.bcm.edu	hg19	1	155295430	155295430	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	RUSC1	NM_001105203	exon6	c.G1781C	p.S594T	GCCGTAGCCGCTT	.	118.0	37.0	110.0	0.0	.	85	.	.	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	hg19	1	181452992	181452992	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	CACNA1E_ENST00000367573,colon,carcinoma,0,2	CACNA1E	NM_001205293	exon1	c.G112T	p.A38S	GCGGCCGCCTACA	.	198.0	79.0	202.0	1.0	.	778	.	.	Atlas-SNP
TRAF5	7188	hgsc.bcm.edu	hg19	1	211545809	211545809	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	TRAF5	NM_004619	exon11	c.A1439G	p.Q480R	TCAGGCAGAGGGT	.	81.0	25.0	74.0	0.0	.	64	.	.	Atlas-SNP
EPRS	2058	hgsc.bcm.edu	hg19	1	220193425	220193425	+	Silent	SNP	T	T	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	EPRS	NM_004446	exon10	c.A1254G	p.P418P	AATATATGGTTTT	.	102.0	23.0	140.0	0.0	.	140	.	.	Atlas-SNP
WDR43	23160	hgsc.bcm.edu	hg19	2	29129433	29129433	+	Silent	SNP	A	A	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	WDR43	NM_015131	exon3	c.A471G	p.T157T	ACAGACATGCAAA	.	85.0	24.0	98.0	0.0	.	38	.	.	Atlas-SNP
PEX13	5194	hgsc.bcm.edu	hg19	2	61258823	61258823	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	PEX13	NM_002618	exon2	c.A362C	p.Q121P	TTCAGCAAGCTGA	.	138.0	36.0	94.0	0.0	.	27	.	.	Atlas-SNP
OTX1	5013	hgsc.bcm.edu	hg19	2	63283430	63283430	+	Silent	SNP	A	A	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	OTX1	NM_014562	exon5	c.A1044T	p.S348S	AGCCTCATGGCGG	.	157.0	54.0	153.0	0.0	.	49	.	.	Atlas-SNP
MRPL53	116540	hgsc.bcm.edu	hg19	2	74699251	74699251	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	MRPL53	NM_053050	exon3	c.C334T	p.R112C	GTCAGCGACCAGT	.	120.0	10.0	138.0	0.0	.	13	.	.	Atlas-SNP
NCKAP5	344148	hgsc.bcm.edu	hg19	2	133489528	133489528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	NCKAP5	NM_207363	exon17	c.C5225A	p.P1742Q	GAGTCTGGCTGGC	.	220.0	72.0	236.0	0.0	.	322	.	.	Atlas-SNP
LRP2	4036	hgsc.bcm.edu	hg19	2	170055351	170055351	+	Silent	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	LRP2	NM_004525	exon45	c.G8523A	p.L2841L	GTCACACAAATAA	.	94.0	27.0	89.0	0.0	.	751	.	.	Atlas-SNP
MYO3B	140469	hgsc.bcm.edu	hg19	2	171260757	171260757	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	MYO3B	NM_001083615	exon20	c.A2278T	p.M760L	CTCCAGATGGAAT	.	88.0	28.0	94.0	0.0	.	320	.	.	Atlas-SNP
HNRNPA3	220988	hgsc.bcm.edu	hg19	2	178081416	178081416	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	HNRNPA3	NM_194247	exon6	c.G656T	p.G219V	GAGGTGGATCTGG	.	111.0	31.0	148.0	0.0	.	42	.	.	Atlas-SNP
OSBPL6	114880	hgsc.bcm.edu	hg19	2	179201097	179201097	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	OSBPL6	NM_001201482	exon9	c.A727G	p.T243A	TGCACAACTGGCC	.	112.0	39.0	136.0	0.0	.	178	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179579150	179579150	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	TTN	NM_001267550	exon91	c.G26351A	p.W8784X	GAAATCCATATGT	.	70.0	11.0	61.0	0.0	.	18412	.	.	Atlas-SNP
METTL21A	151194	hgsc.bcm.edu	hg19	2	208478154	208478154	+	Silent	SNP	A	A	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	METTL21A	NM_145280	exon4	c.T273A	p.T91T	CGTGATAGTCACA	.	19.0	5.0	26.0	0.0	.	24	.	.	Atlas-SNP
TRPM8	79054	hgsc.bcm.edu	hg19	2	234894478	234894478	+	Silent	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	TRPM8	NM_024080	exon21	c.C2908T	p.L970L	AACATCCTGCTGG	.	208.0	84.0	251.0	0.0	.	146	.	.	Atlas-SNP
TOP2B	7155	hgsc.bcm.edu	hg19	3	25668275	25668275	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	TOP2B	NM_001068	exon17	c.T2082A	p.H694Q	TAAGCCATGTAGC	.	74.0	4.0	66.0	0.0	.	98	.	.	Atlas-SNP
MST1	4485	hgsc.bcm.edu	hg19	3	49724207	49724207	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	MST1	NM_020998	exon7	c.T757C	p.Y253H	GGCAATAGTTGTC	.	436.0	74.0	425.0	0.0	.	84	.	.	Atlas-SNP
GNAI2	2771	hgsc.bcm.edu	hg19	3	50273847	50273847	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	GNAI2	NM_002070	exon1	c.G80T	p.G27V	AGGACGGAGAGAA	.	118.0	41.0	99.0	0.0	.	42	.	.	Atlas-SNP
CACNA2D2	9254	hgsc.bcm.edu	hg19	3	50415488	50415488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CACNA2D2	NM_001174051	exon15	c.G1430A	p.G477D	TCCTTGCCTGCCA	.	134.0	32.0	113.0	0.0	.	82	.	.	Atlas-SNP
TMPRSS7	344805	hgsc.bcm.edu	hg19	3	111785275	111785275	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	TMPRSS7	NM_001042575	exon11	c.G1214A	p.R405K	CCTTCAGGCAGCA	.	80.0	36.0	79.0	0.0	.	126	.	.	Atlas-SNP
NR1I2	8856	hgsc.bcm.edu	hg19	3	119526207	119526207	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	NR1I2	NM_022002	exon2	c.G227T	p.G76V	TCGGAGGTCCCCA	.	171.0	50.0	166.0	0.0	.	44	.	.	Atlas-SNP
KCNMB3	27094	hgsc.bcm.edu	hg19	3	178968887	178968887	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	KCNMB3	NM_014407	exon1	c.A5G	p.D2G	GAAAAGTCCATCT	.	101.0	26.0	122.0	0.0	.	46	.	.	Atlas-SNP
PEX5L	51555	hgsc.bcm.edu	hg19	3	179537706	179537706	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	PEX5L	NM_016559	exon9	c.A881T	p.N294I	ATCCAGTTCCTCC	.	182.0	57.0	188.0	0.0	.	104	.	.	Atlas-SNP
TLR1	7096	hgsc.bcm.edu	hg19	4	38799346	38799346	+	Silent	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	TLR1	NM_003263	exon4	c.G1107A	p.G369G	AAGGTGCCCACAA	.	32.0	5.0	38.0	0.0	.	70	.	.	Atlas-SNP
IBSP	3381	hgsc.bcm.edu	hg19	4	88732684	88732684	+	Silent	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	IBSP	NM_004967	exon7	c.C576T	p.S192S	CGGCAGCAGCGGA	.	238.0	79.0	240.0	0.0	.	53	.	.	Atlas-SNP
TBC1D9	23158	hgsc.bcm.edu	hg19	4	141543975	141543975	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	TBC1D9	NM_015130	exon21	c.C3175T	p.L1059F	GCAGGAGGCTGGT	.	43.0	26.0	38.0	0.0	.	198	.	.	Atlas-SNP
ARFIP1	27236	hgsc.bcm.edu	hg19	4	153750843	153750843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	ARFIP1_ENST00000451320,NS,carcinoma,0,2	ARFIP1	NM_001025593	exon2	c.G58A	p.E20K	AATGGAGAAGTTG	.	40.0	11.0	77.0	0.0	.	69	.	.	Atlas-SNP
CHD1	1105	hgsc.bcm.edu	hg19	5	98229286	98229286	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CHD1	NM_001270	exon13	c.G1825T	p.A609S	TAAATGCCCAATT	.	71.0	4.0	107.0	0.0	.	137	.	.	Atlas-SNP
PPIP5K2	23262	hgsc.bcm.edu	hg19	5	102469329	102469329	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	PPIP5K2	NM_015216	exon2	c.G287T	p.C96F	GTGATTGTCTTAT	.	40.0	14.0	61.0	0.0	.	98	.	.	Atlas-SNP
PCDHB11	56125	hgsc.bcm.edu	hg19	5	140579644	140579644	+	Silent	SNP	C	C	T	rs377046428		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	PCDHB11,colon,carcinoma,0,1	PCDHB11	NM_018931	exon1	c.C297T	p.I99I	TTCCATCGAGCCT	.	96.0	5.0	109.0	0.0	.	162	.	.	Atlas-SNP
C1QTNF2	114898	hgsc.bcm.edu	hg19	5	159781851	159781851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	C1QTNF2	NM_031908	exon2	c.G303A	p.M101I	TCCCATCATTCCT	.	80.0	29.0	66.0	0.0	.	33	.	.	Atlas-SNP
AGPAT1	10554	hgsc.bcm.edu	hg19	6	32138303	32138303	+	Silent	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	AGPAT1	NM_006411	exon4	c.C409T	p.L137L	AGGCCAGCCCGGC	.	124.0	36.0	114.0	0.0	.	22	.	.	Atlas-SNP
FOXP4	116113	hgsc.bcm.edu	hg19	6	41566660	41566660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	FOXP4	NM_001012426	exon17	c.G2029A	p.E677K	CCGGGAGAAGAAC	.	258.0	89.0	275.0	0.0	.	83	.	.	Atlas-SNP
LGSN	51557	hgsc.bcm.edu	hg19	6	63990465	63990465	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	LGSN	NM_016571	exon4	c.A991G	p.T331A	CAGAAGTGCTGCA	.	51.0	25.0	67.0	0.0	.	82	.	.	Atlas-SNP
PGM3	5238	hgsc.bcm.edu	hg19	6	83888466	83888466	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	PGM3	NM_001199917	exon9	c.A1039C	p.S347R	TCAAACTTTCTCC	.	85.0	32.0	109.0	0.0	.	39	.	.	Atlas-SNP
KIAA0408	9729	hgsc.bcm.edu	hg19	6	127768213	127768213	+	Silent	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	KIAA0408	NM_014702	exon5	c.G1251A	p.E417E	ACTGCTCTCTGCT	.	36.0	5.0	66.0	0.0	.	61	.	.	Atlas-SNP
PLXNA4	91584	hgsc.bcm.edu	hg19	7	131833385	131833385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	PLXNA4_ENST00000359827,right_upper_lobe,carcinoma,0,2	PLXNA4	NM_020911	exon26	c.G4681A	p.A1561T	TCCTTGCCCCACT	.	151.0	49.0	109.0	0.0	.	873	.	.	Atlas-SNP
NRG1	3084	hgsc.bcm.edu	hg19	8	32621590	32621590	+	Silent	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	NRG1	NM_013956	exon13	c.C1608T	p.Y536Y	AGAGTACGAGCCA	.	106.0	29.0	114.0	0.0	.	260	.	.	Atlas-SNP
PRDM14	63978	hgsc.bcm.edu	hg19	8	70981670	70981670	+	Silent	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	PRDM14	NM_024504	exon2	c.G426A	p.P142P	ACAACACGGGCCA	.	147.0	12.0	150.0	0.0	.	102	.	.	Atlas-SNP
CNTLN	54875	hgsc.bcm.edu	hg19	9	17394764	17394764	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CNTLN	NM_017738	exon15	c.T2312C	p.V771A	CAGAAGTCACTTC	.	96.0	33.0	142.0	0.0	.	128	.	.	Atlas-SNP
FRMD3	257019	hgsc.bcm.edu	hg19	9	85863364	85863364	+	Silent	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	FRMD3	NM_174938	exon14	c.C1263T	p.A421A	CTCCCGGGCTGCC	.	40.0	14.0	36.0	0.0	.	96	.	.	Atlas-SNP
CCDC180	0	hgsc.bcm.edu	hg19	9	100105674	100105674	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	.	NM_020893	exon19	c.C2459G	p.S820C	TGGAGTCCTTCAC	.	108.0	6.0	83.0	0.0	.	.	.	.	Atlas-SNP
TGFBR1	7046	hgsc.bcm.edu	hg19	9	101908774	101908774	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	TGFBR1	NM_004612	exon7	c.G1138A	p.A380T	TACATGGCCCCTG	.	45.0	9.0	77.0	0.0	.	70	.	.	Atlas-SNP
EXD3	54932	hgsc.bcm.edu	hg19	9	140247082	140247082	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	EXD3	NM_017820	exon11	c.C1027A	p.L343I	CCTGGAGCCTGAA	.	65.0	4.0	53.0	0.0	.	86	.	.	Atlas-SNP
AKR1E2	83592	hgsc.bcm.edu	hg19	10	4879675	4879675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	AKR1E2	NM_001040177	exon5	c.G484A	p.G162R	ATCACCGGGCTGG	.	108.0	41.0	92.0	0.0	.	30	.	.	Atlas-SNP
ADAM12	8038	hgsc.bcm.edu	hg19	10	127760045	127760045	+	Splice_Site	SNP	C	C	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	ADAM12	NM_003474	exon13	c.1332+1G>T	.	TTCTTACCTCTGG	.	95.0	47.0	210.0	0.0	.	388	.	.	Atlas-SNP
ADAM12	8038	hgsc.bcm.edu	hg19	10	127760046	127760046	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	ADAM12	NM_021641	exon12	c.G1332T	p.E444D	TCTTACCTCTGGC	.	96.0	47.0	211.0	0.0	.	388	.	.	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	hg19	11	1095258	1095258	+	Silent	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	MUC2	NM_002457	exon33	c.G6066A	p.K2022K	CTCCAAGTCGACG	.	169.0	19.0	153.0	0.0	.	614	.	.	Atlas-SNP
NUP98	4928	hgsc.bcm.edu	hg19	11	3707425	3707425	+	Splice_Site	SNP	C	C	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	NUP98	NM_016320	exon30	c.4455-1G>C	.	TAATGTCTGCAAA	.	109.0	38.0	110.0	0.0	.	149	.	.	Atlas-SNP
IPO7	10527	hgsc.bcm.edu	hg19	11	9450696	9450696	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	IPO7	NM_006391	exon14	c.T1544A	p.V515E	TGAAAGTGGAAGC	.	119.0	31.0	156.0	0.0	.	72	.	.	Atlas-SNP
CTR9	9646	hgsc.bcm.edu	hg19	11	10796824	10796824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CTR9	NM_014633	exon23	c.C2956A	p.P986T	CGACGTCCACCAA	.	46.0	20.0	66.0	0.0	.	94	.	.	Atlas-SNP
ARHGAP20	57569	hgsc.bcm.edu	hg19	11	110477435	110477435	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	ARHGAP20	NM_020809	exon10	c.C814T	p.R272X	AGTCTCGAAGATG	.	55.0	12.0	72.0	0.0	.	150	.	.	Atlas-SNP
BCO2	83875	hgsc.bcm.edu	hg19	11	112064703	112064703	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	BCO2	NM_031938	exon4	c.G619T	p.E207X	ACTCTGGAAAAAA	.	68.0	16.0	71.0	0.0	.	44	.	.	Atlas-SNP
USP2	9099	hgsc.bcm.edu	hg19	11	119228275	119228275	+	Silent	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	USP2	NM_004205	exon11	c.G1527A	p.R509R	TCGGATCCTGGAT	.	132.0	50.0	115.0	0.0	.	71	.	.	Atlas-SNP
NANOG	79923	hgsc.bcm.edu	hg19	12	7945627	7945627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	NANOG	NM_024865	exon2	c.C233T	p.T78I	AACCCACTTCTGC	.	134.0	62.0	194.0	0.0	.	30	.	.	Atlas-SNP
OR9K2	441639	hgsc.bcm.edu	hg19	12	55524128	55524128	+	Silent	SNP	T	T	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	OR9K2,NS,carcinoma,0,1	OR9K2	NM_001005243	exon1	c.T576C	p.S192S	TTTATCTTTTTGC	.	96.0	33.0	107.0	1.0	.	63	.	.	Atlas-SNP
TMBIM4	51643	hgsc.bcm.edu	hg19	12	66531753	66531753	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	TMBIM4	NM_016056	exon7	c.T704G	p.V235G	TTATTAACTGCTT	.	51.0	16.0	55.0	0.0	.	47	.	.	Atlas-SNP
LRRIQ1	84125	hgsc.bcm.edu	hg19	12	85518185	85518185	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	LRRIQ1	NM_001079910	exon17	c.A3895T	p.R1299X	CAGAAGAGAGAAG	.	78.0	27.0	76.0	0.0	.	512	.	.	Atlas-SNP
LRRIQ1	84125	hgsc.bcm.edu	hg19	12	85554390	85554390	+	Splice_Site	SNP	G	G	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	LRRIQ1	NM_001079910	exon24	c.4721-1G>C	.	TGTTTAGATTCCA	.	52.0	23.0	50.0	0.0	.	512	.	.	Atlas-SNP
HNF1A	6927	hgsc.bcm.edu	hg19	12	121431983	121431983	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	HNF1A,NS,other,0,2	HNF1A	NM_000545	exon4	c.A730G	p.R244G	ATCCAGAGAGGGG	.	163.0	46.0	150.0	1.0	.	302	.	.	Atlas-SNP
HNF1A	6927	hgsc.bcm.edu	hg19	12	121434162	121434162	+	Silent	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	HNF1A	NM_000545	exon5	c.G1053T	p.V351V	CCAAGTGTCCCCC	.	142.0	33.0	168.0	0.0	.	302	.	.	Atlas-SNP
HNF1A	6927	hgsc.bcm.edu	hg19	12	121434164	121434164	+	Missense_Mutation	SNP	C	C	T	rs151344538	alternate_allele	TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	HNF1A	NM_000545	exon5	c.C1055T	p.S352F	AAGTGTCCCCCAC	.	141.0	29.0	167.0	0.0	.	302	.	.	Atlas-SNP
CPB2	1361	hgsc.bcm.edu	hg19	13	46638821	46638821	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CPB2	NM_001872	exon8	c.C758T	p.T253I	AGGTCTGTTCCGA	.	145.0	50.0	160.0	0.0	.	60	.	.	Atlas-SNP
KLHL1	57626	hgsc.bcm.edu	hg19	13	70293586	70293586	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	KLHL1	NM_020866	exon9	c.A1930G	p.T644A	CACATGTGGCCAC	.	130.0	32.0	146.0	0.0	.	164	.	.	Atlas-SNP
LMO7	4008	hgsc.bcm.edu	hg19	13	76429476	76429476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	LMO7	NM_005358	exon28	c.G3896A	p.G1299D	CCCTGGGTCTTTG	.	166.0	49.0	176.0	0.0	.	334	.	.	Atlas-SNP
FBXL3	26224	hgsc.bcm.edu	hg19	13	77589641	77589641	+	Silent	SNP	A	A	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	FBXL3	NM_012158	exon4	c.T546A	p.T182T	TACTGGAGTATCA	.	109.0	38.0	147.0	0.0	.	46	.	.	Atlas-SNP
IRS2	8660	hgsc.bcm.edu	hg19	13	110437992	110437992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	IRS2	NM_003749	exon1	c.C409T	p.R137C	GCGCGCGGTACCA	.	39.0	12.0	30.0	0.0	.	44	.	.	Atlas-SNP
NDN	4692	hgsc.bcm.edu	hg19	15	23931535	23931535	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	NDN	NM_002487	exon1	c.A830G	p.E277G	AGGAACTCCATGA	.	52.0	12.0	69.0	0.0	.	79	.	.	Atlas-SNP
UNC13C	440279	hgsc.bcm.edu	hg19	15	54590037	54590037	+	Silent	SNP	T	T	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	UNC13C	NM_001080534	exon10	c.T4017A	p.S1339S	TGTATCTGGGGCC	.	276.0	81.0	291.0	0.0	.	674	.	.	Atlas-SNP
GTF3C1	2975	hgsc.bcm.edu	hg19	16	27549250	27549250	+	Splice_Site	SNP	T	T	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	GTF3C1	NM_001520	exon5	c.609-2A>T	.	CAACCCTGGAGGA	.	79.0	26.0	71.0	0.0	.	210	.	.	Atlas-SNP
VPS35	55737	hgsc.bcm.edu	hg19	16	46716005	46716005	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	VPS35	NM_018206	exon3	c.G185C	p.S62T	TAGTAACTCTTTG	.	156.0	10.0	214.0	0.0	.	49	.	.	Atlas-SNP
DVL2	1856	hgsc.bcm.edu	hg19	17	7131298	7131298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	DVL2	NM_004422	exon10	c.G1100T	p.R367L	TCACTTCGGGGGA	.	97.0	51.0	187.0	0.0	.	49	.	.	Atlas-SNP
SHISA6	388336	hgsc.bcm.edu	hg19	17	11166833	11166833	+	Silent	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	SHISA6	NM_207386	exon2	c.G789A	p.K263K	GGCCAAGCAGACT	.	116.0	58.0	228.0	0.0	.	44	.	.	Atlas-SNP
KIAA0100	9703	hgsc.bcm.edu	hg19	17	26948494	26948494	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	KIAA0100	NM_014680	exon27	c.G4982T	p.R1661L	CGCTGCCGGTGCT	.	69.0	21.0	83.0	0.0	.	175	.	.	Atlas-SNP
ABCA6	23460	hgsc.bcm.edu	hg19	17	67080447	67080447	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	ABCA6	NM_080284	exon34	c.A4310G	p.D1437G	GGTTCATCCAGGA	.	114.0	29.0	109.0	0.0	.	210	.	.	Atlas-SNP
SLC26A11	284129	hgsc.bcm.edu	hg19	17	78220002	78220002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	SLC26A11	NM_173626	exon12	c.G1147A	p.V383M	GGCCTGGTGACGG	.	69.0	20.0	53.0	0.0	.	60	.	.	Atlas-SNP
NDUFV2	4729	hgsc.bcm.edu	hg19	18	9102767	9102767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	NDUFV2	NM_021074	exon1	c.C26T	p.A9V	TCCGGGCCCGGGC	.	33.0	16.0	20.0	0.0	.	17	.	.	Atlas-SNP
FZR1	51343	hgsc.bcm.edu	hg19	19	3522996	3522996	+	Silent	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	FZR1	NM_001136197	exon1	c.G9A	p.Q3Q	GGACCAGGACTAT	.	202.0	66.0	164.0	0.0	.	42	.	.	Atlas-SNP
ZNF558	148156	hgsc.bcm.edu	hg19	19	8932718	8932718	+	Silent	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	ZNF558,NS,carcinoma,0,2	ZNF558	NM_144693	exon2	c.C81T	p.G27G	CTCTCCGCCCTGT	.	191.0	77.0	217.0	1.0	.	43	.	.	Atlas-SNP
SCN1B	6324	hgsc.bcm.edu	hg19	19	35523452	35523452	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	SCN1B	NM_001037	exon2	c.T61A	p.C21S	GGGGGCTGCGTGG	.	80.0	19.0	87.0	0.0	.	32	.	.	Atlas-SNP
PLA2G4C	8605	hgsc.bcm.edu	hg19	19	48565344	48565344	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	PLA2G4C	NM_001159322	exon14	c.A1198G	p.I400V	TGTTGATGGCTAA	.	147.0	43.0	162.0	0.0	.	76	.	.	Atlas-SNP
SHANK1	50944	hgsc.bcm.edu	hg19	19	51171701	51171701	+	Silent	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	SHANK1	NM_016148	exon22	c.C3516T	p.S1172S	GCCCTGGCTGCTG	.	15.0	6.0	18.0	0.0	.	210	.	.	Atlas-SNP
ZNF480	147657	hgsc.bcm.edu	hg19	19	52817496	52817496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	ZNF480	NM_144684	exon3	c.G163T	p.V55L	AAGGATGTGATGT	.	67.0	18.0	63.0	0.0	.	123	.	.	Atlas-SNP
BPIFA3	128861	hgsc.bcm.edu	hg19	20	31814775	31814775	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	.	NM_178466	exon6	c.G661A	p.V221M	CTGGATGTGAAAC	.	105.0	18.0	134.0	0.0	.	.	.	.	Atlas-SNP
EPB41L1	2036	hgsc.bcm.edu	hg19	20	34773213	34773213	+	Silent	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	EPB41L1	NM_001258329	exon8	c.C741T	p.T247T	CCAGACCCGGGAG	.	86.0	13.0	93.0	0.0	.	111	.	.	Atlas-SNP
ZSWIM1	90204	hgsc.bcm.edu	hg19	20	44511883	44511883	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	ZSWIM1	NM_080603	exon2	c.A652C	p.S218R	CTCCTGAGCAACT	.	74.0	20.0	80.0	0.0	.	35	.	.	Atlas-SNP
RFPL2	10739	hgsc.bcm.edu	hg19	22	32589248	32589248	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	RFPL2	NM_006605	exon1	c.C14T	p.S5L	ACAAGTGACAACC	.	211.0	106.0	217.0	0.0	.	81	.	.	Atlas-SNP
CLCN5	1184	hgsc.bcm.edu	hg19	X	49854827	49854827	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CLCN5	NM_001127898	exon13	c.G1799T	p.G600V	TGACTGGTGGCTT	.	49.0	29.0	66.0	0.0	.	137	.	.	Atlas-SNP
FAM46D	169966	hgsc.bcm.edu	hg19	X	79698451	79698451	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	FAM46D	NM_001170574	exon5	c.G413A	p.C138Y	AGGTTTGCAATGG	.	49.0	7.0	80.0	0.0	.	69	.	.	Atlas-SNP
SLC25A5	292	hgsc.bcm.edu	hg19	X	118603838	118603838	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	SLC25A5	NM_001152	exon2	c.T326G	p.F109C	CCCAGTTTTGGCT	.	104.0	11.0	80.0	0.0	.	33	.	.	Atlas-SNP
XPNPEP2	7512	hgsc.bcm.edu	hg19	X	128876095	128876095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	XPNPEP2	NM_003399	exon2	c.G61T	p.G21C	GCCTGGGGCCACA	.	58.0	4.0	48.0	0.0	.	84	.	.	Atlas-SNP
BCORL1	63035	hgsc.bcm.edu	hg19	X	129149866	129149866	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	BCORL1	NM_021946	exon3	c.C3118G	p.L1040V	CCACAGCTTGGAA	.	129.0	81.0	101.0	0.0	.	213	.	.	Atlas-SNP
IGSF1	3547	hgsc.bcm.edu	hg19	X	130408573	130408573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	IGSF1	NM_001170961	exon18	c.G3766A	p.G1256R	TCTTACCTGCTGC	.	29.0	5.0	60.0	0.0	.	231	.	.	Atlas-SNP
SLC9A6	10479	hgsc.bcm.edu	hg19	X	135106598	135106598	+	Silent	SNP	A	A	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	SLC9A6	NM_001042537	exon12	c.A1572G	p.V524V	GTGGGTATTTGGT	.	93.0	54.0	106.0	0.0	.	64	.	.	Atlas-SNP
GAB3	139716	hgsc.bcm.edu	hg19	X	153940659	153940659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	GAB3	NM_001081573	exon4	c.C914T	p.S305F	GTGTTGGACATAA	.	130.0	95.0	95.0	0.0	.	73	.	.	Atlas-SNP
USP34	9736	hgsc.bcm.edu	hg19	2	61441759	61441760	+	In_Frame_Ins	INS	-	-	GACCTTGTT	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	USP34	NM_014709	exon68	c.8118_8119insAACAAGGTC	p.S2706delinsSTRS	.	.	267.0	21.0	236.0	0.0	.	334	.	.	Atlas-Indel,Pindel
HMGCR	3156	hgsc.bcm.edu	hg19	5	74651016	74651017	+	In_Frame_Ins	INS	-	-	CAAGAC	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	HMGCR	NM_000859	exon13	c.1699_1700insCAAGAC	p.N567delinsTRH	.	.	107.0	21.0	112.0	0.0	.	53	.	.	Atlas-INDEL
UNKL	64718	hgsc.bcm.edu	hg19	16	1417163	1417179	+	Frame_Shift_Del	DEL	CCGATGTCCCCACAGCC	CCGATGTCCCCACAGCC	-	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	CCGATGTCCCCACAGCC	CCGATGTCCCCACAGCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	UNKL	NM_023076	exon5	c.458_474del	p.153_158del	.	.	144.0	10.0	128.0	0.0	.	46	.	.	Atlas-Indel,Pindel
HMGCR	3156	hgsc.bcm.edu	hg19	5	74651018	74651018	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	HMGCR	NM_000859	exon13	c.1700delA	p.N567fs	.	.	106.0	21.0	108.0	0.0	.	53	.	.	Atlas-INDEL
ZDHHC4	55146	hgsc.bcm.edu	hg19	7	6621814	6621814	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	ZDHHC4	NM_018106	exon5	c.301delC	p.L101fs	.	.	167.0	61.0	171.0	0.0	.	36	.	.	Atlas-Indel,Pindel
HNF1A	6927	hgsc.bcm.edu	hg19	12	121434166	121434166	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	HNF1A	NM_000545	exon5	c.1056delC	p.S352fs	.	.	139.0	21.0	168.0	0.0	.	302	.	.	Pindel
HMGCR	3156	hgsc.bcm.edu	hg19	5	74651021	74651022	+	Frame_Shift_Ins	INS	-	-	CAAGA	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	HMGCR	NM_000859	exon13	c.1704_1705insCAAGA	p.R568fs	.	.	107.0	16.0	107.0	0.0	.	53	.	.	Pindel