Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
LZIC	84328	hgsc.bcm.edu	hg19	1	9995639	9995639	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	LZIC	NM_032368	exon3	c.C148G	p.L50V	GCTCCAGAGTTTC	.	78.0	28.0	70.0	0.0	.	11	.	.	Atlas-SNP
RSC1A1	6248	hgsc.bcm.edu	hg19	1	15988085	15988085	+	Silent	SNP	C	C	G	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	RSC1A1	NM_006511	exon1	c.C1722G	p.A574A	TCCTGCCACAGAT	.	250.0	79.0	239.0	0.0	.	29	.	.	Atlas-SNP
DDOST	1650	hgsc.bcm.edu	hg19	1	20980769	20980769	+	Silent	SNP	G	G	A	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	DDOST	NM_005216	exon7	c.C792T	p.F264F	GTCGCTGAAGAAG	.	153.0	48.0	128.0	0.0	.	30	.	.	Atlas-SNP
AHDC1	27245	hgsc.bcm.edu	hg19	1	27875598	27875598	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	AHDC1	NM_001029882	exon6	c.C3029A	p.A1010D	GGTGAGGCAGGGA	.	37.0	4.0	27.0	0.0	.	98	.	.	Atlas-SNP
TMEM61	199964	hgsc.bcm.edu	hg19	1	55452005	55452005	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	TMEM61	NM_182532	exon2	c.G251A	p.G84D	TCATTGGCCTGCT	.	125.0	36.0	72.0	0.0	.	22	.	.	Atlas-SNP
ARHGAP29	9411	hgsc.bcm.edu	hg19	1	94654393	94654393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	ARHGAP29	NM_004815	exon15	c.G1681A	p.G561R	ATGTACCTGGACT	.	215.0	9.0	234.0	0.0	.	132	.	.	Atlas-SNP
GJA8	2703	hgsc.bcm.edu	hg19	1	147380477	147380477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	GJA8	NM_005267	exon2	c.G395A	p.S132N	AGAAGAGCAGCGG	.	53.0	11.0	52.0	0.0	.	108	.	.	Atlas-SNP
CELF3	11189	hgsc.bcm.edu	hg19	1	151679692	151679692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	CELF3	NM_007185	exon8	c.C851A	p.P284Q	GGCACCGGGCTGT	.	97.0	4.0	75.0	0.0	.	49	.	.	Atlas-SNP
IGFN1	91156	hgsc.bcm.edu	hg19	1	201196307	201196307	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	IGFN1	NM_001164586	exon23	c.C11084A	p.A3695E	GCCAGGCAGTCAG	.	127.0	6.0	106.0	0.0	.	220	.	.	Atlas-SNP
LYG2	254773	hgsc.bcm.edu	hg19	2	99861811	99861811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	LYG2,NS,carcinoma,0,2	LYG2	NM_175735	exon4	c.G295A	p.A99T	TGGCTGCGATGAC	.	62.0	3.0	49.0	0.0	.	26	.	.	Atlas-SNP
CCSER1	401145	hgsc.bcm.edu	hg19	4	91230460	91230460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	.	NM_001145065	exon2	c.C1025T	p.A342V	CCTCTGCTGCTAA	.	217.0	70.0	191.0	0.0	.	.	.	.	Atlas-SNP
ZNF879	345462	hgsc.bcm.edu	hg19	5	178459932	178459932	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	ZNF879	NM_001136116	exon5	c.G983T	p.C328F	GTCAGTGCTCATC	.	99.0	4.0	119.0	0.0	.	41	.	.	Atlas-SNP
TOX	9760	hgsc.bcm.edu	hg19	8	59852023	59852023	+	Silent	SNP	C	C	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	TOX	NM_014729	exon3	c.G249A	p.L83L	GTGCACCAGCGAG	.	213.0	11.0	209.0	0.0	.	83	.	.	Atlas-SNP
LRRC69	100130742	hgsc.bcm.edu	hg19	8	92212905	92212905	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	LRRC69	NM_001129890	exon7	c.T818C	p.I273T	ATGACATAGAACG	.	298.0	90.0	280.0	0.0	.	24	.	.	Atlas-SNP
UCN3	114131	hgsc.bcm.edu	hg19	10	5416093	5416093	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	UCN3	NM_053049	exon2	c.T410C	p.I137T	TCAACATCGCCAA	.	66.0	4.0	66.0	0.0	.	13	.	.	Atlas-SNP
KIAA1279	26128	hgsc.bcm.edu	hg19	10	70775430	70775430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	KIAA1279	NM_015634	exon7	c.C1124T	p.S375F	CCATCTCTGCAGT	.	95.0	37.0	94.0	0.0	.	35	.	.	Atlas-SNP
HTR7	3363	hgsc.bcm.edu	hg19	10	92616999	92616999	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	HTR7	NM_019860	exon1	c.A430G	p.I144V	CCCCGATGAGGTC	.	306.0	79.0	223.0	0.0	.	122	.	.	Atlas-SNP
MYOF	26509	hgsc.bcm.edu	hg19	10	95109596	95109596	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	MYOF	NM_013451	exon36	c.A4052G	p.N1351S	GGAAAGTTGGGTG	.	209.0	59.0	177.0	0.0	.	177	.	.	Atlas-SNP
OR5J2	282775	hgsc.bcm.edu	hg19	11	55944717	55944717	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	OR5J2,NS,carcinoma,0,1	OR5J2	NM_001005492	exon1	c.G624C	p.M208I	TGCCATGGCCACC	.	309.0	96.0	308.0	1.0	.	98	.	.	Atlas-SNP
FAT3	120114	hgsc.bcm.edu	hg19	11	92533065	92533065	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	FAT3	NM_001008781	exon9	c.C6886G	p.L2296V	ACAACACTATCAG	.	145.0	12.0	159.0	0.0	.	1822	.	.	Atlas-SNP
ZNF423	23090	hgsc.bcm.edu	hg19	16	49671020	49671020	+	Silent	SNP	C	C	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	ZNF423	NM_015069	exon4	c.G2043A	p.L681L	CACTGTCAGGTGC	.	249.0	77.0	182.0	0.0	.	463	.	.	Atlas-SNP
LDHD	197257	hgsc.bcm.edu	hg19	16	75146313	75146313	+	Silent	SNP	G	G	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	LDHD	NM_153486	exon11	c.C1465A	p.R489R	GCTGCCGCATGGT	.	99.0	4.0	93.0	0.0	.	34	.	.	Atlas-SNP
SGSH	6448	hgsc.bcm.edu	hg19	17	78188902	78188902	+	Silent	SNP	C	C	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	SGSH	NM_000199	exon3	c.G285A	p.V95V	GTGGTGCACGTCC	.	55.0	4.0	17.0	0.0	.	27	.	.	Atlas-SNP
LRFN1	57622	hgsc.bcm.edu	hg19	19	39804840	39804840	+	Silent	SNP	C	C	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	LRFN1	NM_020862	exon1	c.G1137A	p.A379A	CGCCGTCGCTTCC	.	50.0	20.0	30.0	0.0	.	59	.	.	Atlas-SNP
SHANK3	85358	hgsc.bcm.edu	hg19	22	51160334	51160334	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	SHANK3	NM_033517	exon21	c.A4031T	p.E1344V	GGGTGGAGGAGGC	.	68.0	11.0	46.0	0.0	.	96	.	.	Atlas-SNP
SLC9A6	10479	hgsc.bcm.edu	hg19	X	135122263	135122263	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	SLC9A6	NM_001042537	exon15	c.G1756C	p.G586R	CACAGCGGGCCTC	.	151.0	96.0	118.0	0.0	.	64	.	.	Atlas-SNP
TMEM257	9142	hgsc.bcm.edu	hg19	X	144909486	144909486	+	Silent	SNP	C	C	A	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	.	NM_004709	exon1	c.C291A	p.P97P	GTCTCCCAGGGCC	.	124.0	68.0	107.0	0.0	.	.	.	.	Atlas-SNP
CYTB	0	hgsc.bcm.edu	hg19	MT	15243	15243	+	Missense_Mutation	SNP	G	G	A	rs207459999	bycluster	TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	.	ENST00000361789	exon1	c.G497A	p.G166E	TCTGAGGAGGCTA	.	38.0	7.0	8.0	0.0	.	.	.	.	Atlas-SNP
COL11A2	1302	hgsc.bcm.edu	hg19	6	33154431	33154431	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	COL11A2	NM_080679	exon5	c.772delC	p.P258fs	.	.	324.0	52.0	275.0	0.0	.	124	.	.	Pindel