Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
PTCHD2	57540	hgsc.bcm.edu	hg19	1	11574466	11574466	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	PTCHD2	NM_020780	exon4	c.G1336T	p.G446W	CTCTATGGGGGGA	.	41.0	13.0	61.0	0.0	.	193	.	.	Atlas-SNP
PADI4	23569	hgsc.bcm.edu	hg19	1	17690059	17690059	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	PADI4	NM_012387	exon16	c.C1801A	p.P601T	CCCAAGCCCTTCG	.	114.0	50.0	84.0	0.0	.	70	.	.	Atlas-SNP
PTCH2	8643	hgsc.bcm.edu	hg19	1	45292375	45292375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	PTCH2	NM_001166292	exon18	c.G2761A	p.A921T	AGTCTGCAGTCTT	.	29.0	8.0	34.0	0.0	.	96	.	.	Atlas-SNP
INADL	10207	hgsc.bcm.edu	hg19	1	62341008	62341008	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	INADL	NM_176877	exon21	c.A2929C	p.N977H	AATCTTAATTCAT	.	392.0	144.0	406.0	0.0	.	179	.	.	Atlas-SNP
FOXD3	27022	hgsc.bcm.edu	hg19	1	63788839	63788839	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	FOXD3	NM_012183	exon1	c.A110G	p.E37G	TGGAAGAGAAGGA	.	20.0	7.0	10.0	0.0	.	15	.	.	Atlas-SNP
LHX8	431707	hgsc.bcm.edu	hg19	1	75608866	75608866	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	LHX8	NM_001001933	exon6	c.A453G	p.R151R	CCGGAGAGCCAAG	.	97.0	27.0	76.0	0.0	.	73	.	.	Atlas-SNP
SSX2IP	117178	hgsc.bcm.edu	hg19	1	85121516	85121516	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	SSX2IP	NM_001166417	exon12	c.A1388T	p.E463V	AATACCTCCAATC	.	61.0	25.0	73.0	0.0	.	53	.	.	Atlas-SNP
CLCA2	9635	hgsc.bcm.edu	hg19	1	86913417	86913417	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	CLCA2	NM_006536	exon11	c.A1940T	p.E647V	AGCCAGAGACTGG	.	38.0	11.0	37.0	0.0	.	102	.	.	Atlas-SNP
CD1E	913	hgsc.bcm.edu	hg19	1	158325807	158325807	+	Silent	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	CD1E	NM_030893	exon4	c.C816A	p.T272T	AGCAACCCTGGAT	.	111.0	28.0	89.0	0.0	.	129	.	.	Atlas-SNP
USP21	27005	hgsc.bcm.edu	hg19	1	161132173	161132173	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	USP21	NM_012475	exon4	c.C774T	p.L258L	AGAGCTCACTGAA	.	148.0	51.0	120.0	0.0	.	63	.	.	Atlas-SNP
RABGAP1L	9910	hgsc.bcm.edu	hg19	1	174957891	174957891	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	RABGAP1L	NM_001243765	exon8	c.C876A	p.D292E	GAAGGACTCACTT	.	86.0	36.0	91.0	0.0	.	103	.	.	Atlas-SNP
LHX9	56956	hgsc.bcm.edu	hg19	1	197887089	197887089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	LHX9	NM_020204	exon1	c.C136T	p.R46C	GAGGCCCGTCTGG	.	111.0	29.0	81.0	0.0	.	144	.	.	Atlas-SNP
IPO9	55705	hgsc.bcm.edu	hg19	1	201817700	201817700	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	IPO9	NM_018085	exon4	c.T492C	p.H164H	CGTCCATGGAGCC	.	105.0	26.0	98.0	0.0	.	98	.	.	Atlas-SNP
PLEKHA6	22874	hgsc.bcm.edu	hg19	1	204210871	204210871	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	PLEKHA6,NS,carcinoma,0,1	PLEKHA6	NM_014935	exon16	c.C2244T	p.I748I	AAGGCTGATGTCT	.	100.0	33.0	95.0	0.0	.	115	.	.	Atlas-SNP
CNTN2	6900	hgsc.bcm.edu	hg19	1	205041085	205041085	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	CNTN2	NM_005076	exon20	c.G2555T	p.W852L	GCTACTGGAAAGC	.	52.0	20.0	39.0	0.0	.	116	.	.	Atlas-SNP
CR2	1380	hgsc.bcm.edu	hg19	1	207644213	207644213	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	CR2	NM_001006658	exon7	c.C1354G	p.Q452E	TCCATACAGTGTA	.	96.0	24.0	70.0	0.0	.	164	.	.	Atlas-SNP
KCNK2	3776	hgsc.bcm.edu	hg19	1	215259976	215259976	+	Silent	SNP	C	C	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	KCNK2	NM_001017425	exon2	c.C312G	p.S104S	CATATCCCAACAT	.	96.0	24.0	60.0	0.0	.	135	.	.	Atlas-SNP
TGFB2	7042	hgsc.bcm.edu	hg19	1	218607497	218607497	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	TGFB2	NM_001135599	exon4	c.A668T	p.E223V	GAGCAGAAGGCGA	.	161.0	72.0	124.0	0.0	.	102	.	.	Atlas-SNP
LPIN1	23175	hgsc.bcm.edu	hg19	2	11922631	11922631	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	LPIN1	NM_001261428	exon9	c.G1409C	p.R470T	GGAAAAGAGGTAC	.	70.0	21.0	68.0	0.0	.	99	.	.	Atlas-SNP
ATAD2B	54454	hgsc.bcm.edu	hg19	2	24011501	24011501	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ATAD2B	NM_001242338	exon20	c.G2657T	p.R886I	TGTATTCTAAAGA	.	99.0	36.0	120.0	0.0	.	110	.	.	Atlas-SNP
POMC	5443	hgsc.bcm.edu	hg19	2	25384341	25384341	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	POMC	NM_001035256	exon4	c.C413T	p.S138F	GAGTAGGAGCGCT	.	30.0	16.0	12.0	0.0	.	33	.	.	Atlas-SNP
KCNG3	170850	hgsc.bcm.edu	hg19	2	42720469	42720469	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	KCNG3	NM_172344	exon1	c.G173T	p.R58L	TCGTTGCGCTCGC	.	24.0	8.0	9.0	0.0	.	19	.	.	Atlas-SNP
MAT2A	4144	hgsc.bcm.edu	hg19	2	85770059	85770059	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	MAT2A	NM_005911	exon8	c.T987C	p.S329S	ATTATCTATCTCC	.	172.0	57.0	181.0	0.0	.	23	.	.	Atlas-SNP
GLI2	2736	hgsc.bcm.edu	hg19	2	121747847	121747847	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	GLI2	NM_005270	exon13	c.A4357T	p.M1453L	ATCCACATGTACG	.	99.0	38.0	96.0	0.0	.	187	.	.	Atlas-SNP
AMER3	205147	hgsc.bcm.edu	hg19	2	131520150	131520150	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	.	NM_152698	exon2	c.A505G	p.N169D	CGGAGAAACAAGA	.	32.0	10.0	28.0	0.0	.	.	.	.	Atlas-SNP
FMNL2	114793	hgsc.bcm.edu	hg19	2	153471456	153471456	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	FMNL2	NM_052905	exon12	c.C1154A	p.A385D	AAGATGCTGAAAC	.	90.0	40.0	92.0	0.0	.	75	.	.	Atlas-SNP
ERMN	57471	hgsc.bcm.edu	hg19	2	158177872	158177872	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ERMN	NM_001009959	exon4	c.T805C	p.S269P	ATCTGGAATAAGC	.	102.0	5.0	130.0	0.0	.	31	.	.	Atlas-SNP
TBR1	10716	hgsc.bcm.edu	hg19	2	162273138	162273138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	TBR1	NM_006593	exon1	c.G217A	p.D73N	TCCAAGGACTCAC	.	64.0	28.0	62.0	0.0	.	59	.	.	Atlas-SNP
LRP2	4036	hgsc.bcm.edu	hg19	2	170003385	170003385	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	LRP2,colon,carcinoma,0,1	LRP2	NM_004525	exon69	c.C12675A	p.F4225L	GTCCTCGAAAACC	.	149.0	49.0	153.0	0.0	.	751	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179479034	179479034	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	TTN	NM_001267550	exon262	c.A49090G	p.T16364A	CATTGGTTACATC	.	140.0	46.0	133.0	0.0	.	18412	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179489420	179489420	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	TTN	NM_001267550	exon242	c.A44587G	p.T14863A	CGACCGTCTGGTC	.	91.0	33.0	87.0	0.0	.	18412	.	.	Atlas-SNP
SF3B1	23451	hgsc.bcm.edu	hg19	2	198266711	198266711	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	SF3B1	NM_012433	exon15	c.A2221C	p.K741Q	TTACCTTTCCTCT	.	169.0	60.0	155.0	0.0	.	1038	.	.	Atlas-SNP
SPEG	10290	hgsc.bcm.edu	hg19	2	220336992	220336992	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	SPEG	NM_005876	exon15	c.T3879C	p.A1293A	GGTGGCTGTGACG	.	28.0	11.0	33.0	0.0	.	272	.	.	Atlas-SNP
ANO7	50636	hgsc.bcm.edu	hg19	2	242148731	242148731	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ANO7	NM_001001891	exon12	c.T1271C	p.V424A	GCACCGTGTTCTT	.	32.0	7.0	24.0	0.0	.	136	.	.	Atlas-SNP
ATG4B	23192	hgsc.bcm.edu	hg19	2	242590731	242590731	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ATG4B	NM_178326	exon3	c.G165A	p.R55R	ATACAGGAAAAAC	.	78.0	21.0	83.0	0.0	.	35	.	.	Atlas-SNP
CLASP2	23122	hgsc.bcm.edu	hg19	3	33638205	33638205	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	CLASP2	NM_015097	exon19	c.A1949G	p.D650G	TTACCATCCAGCT	.	358.0	134.0	334.0	0.0	.	138	.	.	Atlas-SNP
RHOA	387	hgsc.bcm.edu	hg19	3	49400013	49400013	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	RHOA	NM_001664	exon4	c.C324T	p.P108P	CACGTTGGGACAG	.	110.0	39.0	120.0	0.0	.	46	.	.	Atlas-SNP
GPR62	118442	hgsc.bcm.edu	hg19	3	51990739	51990739	+	Silent	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	GPR62	NM_080865	exon1	c.C1071A	p.P357P	GAGCCCCGCATAC	.	130.0	44.0	96.0	0.0	.	13	.	.	Atlas-SNP
EPHA6	285220	hgsc.bcm.edu	hg19	3	97185271	97185271	+	Silent	SNP	A	A	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	EPHA6	NM_173655	exon5	c.A15C	p.P5P	CTCTCCATTTCAA	.	68.0	30.0	67.0	0.0	.	439	.	.	Atlas-SNP
IGSF11	152404	hgsc.bcm.edu	hg19	3	118647489	118647489	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	IGSF11	NM_001015887	exon3	c.C291T	p.T97T	TGGCATGGTGCCT	.	73.0	21.0	53.0	0.0	.	122	.	.	Atlas-SNP
GPR156	165829	hgsc.bcm.edu	hg19	3	119885965	119885965	+	Missense_Mutation	SNP	C	C	A	rs375340933		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	GPR156	NM_153002	exon9	c.G2359T	p.G787W	GCCCCCCAGTAGG	.	80.0	31.0	57.0	0.0	.	85	.	.	Atlas-SNP
MRPL47	57129	hgsc.bcm.edu	hg19	3	179310438	179310438	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	MRPL47	NM_020409	exon6	c.T623G	p.F208C	CTGAGAAAATGGT	.	78.0	27.0	57.0	0.0	.	31	.	.	Atlas-SNP
IQCG	84223	hgsc.bcm.edu	hg19	3	197670818	197670818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	IQCG	NM_032263	exon4	c.C113T	p.P38L	TCTTTAGGTATTC	.	79.0	33.0	107.0	0.0	.	44	.	.	Atlas-SNP
BOD1L1	259282	hgsc.bcm.edu	hg19	4	13610294	13610294	+	Splice_Site	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	.	NM_148894	exon9	c.1604-2A>G	.	CCTGCCTAGAAAA	.	83.0	36.0	83.0	0.0	.	.	.	.	Atlas-SNP
KDR	3791	hgsc.bcm.edu	hg19	4	55963911	55963911	+	Silent	SNP	G	G	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	KDR	NM_002253	exon18	c.C2532G	p.A844A	GCCAAAGGCACCA	.	63.0	20.0	47.0	0.0	.	307	.	.	Atlas-SNP
CCSER1	401145	hgsc.bcm.edu	hg19	4	91645123	91645123	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	.	NM_001145065	exon7	c.A1991T	p.E664V	TTACTGAAGAGCC	.	349.0	135.0	360.0	0.0	.	.	.	.	Atlas-SNP
ADH1A	124	hgsc.bcm.edu	hg19	4	100205700	100205700	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ADH1A	NM_000667	exon5	c.C423A	p.F141L	GCCAAGGAAGTGG	.	139.0	32.0	112.0	0.0	.	49	.	.	Atlas-SNP
MTTP	4547	hgsc.bcm.edu	hg19	4	100532577	100532577	+	Silent	SNP	G	G	A	rs369415595		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	MTTP	NM_000253	exon15	c.G1956A	p.Q652Q	CTTTCAGTACATT	.	150.0	57.0	153.0	0.0	.	127	.	.	Atlas-SNP
H2AFZ	3015	hgsc.bcm.edu	hg19	4	100870052	100870052	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	H2AFZ,NS,carcinoma,0,1	H2AFZ	NM_002106	exon4	c.C241T	p.R81C	TAATACGCTTTAC	.	167.0	50.0	173.0	1.0	.	13	.	.	Atlas-SNP
GUCY1B3	2983	hgsc.bcm.edu	hg19	4	156724875	156724875	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	GUCY1B3	NM_000857	exon11	c.G1513T	p.E505X	ATGATGGAAATTG	.	59.0	22.0	48.0	0.0	.	65	.	.	Atlas-SNP
GRIA2	2891	hgsc.bcm.edu	hg19	4	158281153	158281153	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	GRIA2	NM_000826	exon13	c.T2149C	p.S717P	CGGAAGTCCAAAG	.	89.0	24.0	91.0	0.0	.	358	.	.	Atlas-SNP
C4orf45	152940	hgsc.bcm.edu	hg19	4	159956201	159956201	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	C4orf45	NM_152543	exon1	c.A48C	p.K16N	CATTTGTTTTCCC	.	87.0	33.0	82.0	0.0	.	8	.	.	Atlas-SNP
C4orf47	441054	hgsc.bcm.edu	hg19	4	186366160	186366160	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	C4orf47	NM_001114357	exon6	c.C757A	p.H253N	CCATCACATTCTG	.	163.0	7.0	203.0	0.0	.	13	.	.	Atlas-SNP
C5orf55	116349	hgsc.bcm.edu	hg19	5	442609	442609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	C5orf55	NM_138464	exon1	c.C329T	p.S110L	CCCAGTGACCCAC	.	37.0	16.0	19.0	0.0	.	11	.	.	Atlas-SNP
ACOT12	134526	hgsc.bcm.edu	hg19	5	80640019	80640019	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ACOT12	NM_130767	exon9	c.T940G	p.Y314D	CCCGATAGCGTCT	.	196.0	51.0	155.0	0.0	.	57	.	.	Atlas-SNP
MEF2C	4208	hgsc.bcm.edu	hg19	5	88057132	88057132	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	MEF2C	NM_001193350	exon4	c.A272G	p.K91R	AGGCCCTTCTTTC	.	82.0	5.0	63.0	0.0	.	184	.	.	Atlas-SNP
TRIM36	55521	hgsc.bcm.edu	hg19	5	114506870	114506870	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	TRIM36	NM_001017397	exon2	c.C113T	p.T38M	TCCGTCGTCTTCC	.	129.0	56.0	94.0	0.0	.	126	.	.	Atlas-SNP
CXCL14	9547	hgsc.bcm.edu	hg19	5	134914414	134914414	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	CXCL14	NM_004887	exon1	c.C91T	p.R31C	CCACACGCGCGGT	.	57.0	32.0	40.0	0.0	.	13	.	.	Atlas-SNP
PCDHA7	56141	hgsc.bcm.edu	hg19	5	140215935	140215935	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	PCDHA7	NM_031852	exon1	c.A1967T	p.E656V	ACGGGGAGCCCTC	.	78.0	39.0	54.0	0.0	.	367	.	.	Atlas-SNP
ARHGEF37	389337	hgsc.bcm.edu	hg19	5	148996303	148996303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ARHGEF37	NM_001001669	exon5	c.A632G	p.N211S	ATATCAATGAGTA	.	146.0	33.0	109.0	0.0	.	45	.	.	Atlas-SNP
TENM2	57451	hgsc.bcm.edu	hg19	5	167645700	167645700	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	.	NM_001122679	exon23	c.C4777G	p.H1593D	GGCATCCACCAAT	.	186.0	36.0	105.0	0.0	.	.	.	.	Atlas-SNP
FAM196B	100131897	hgsc.bcm.edu	hg19	5	169310676	169310676	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	FAM196B	NM_001129891	exon2	c.C227T	p.P76L	GTGGGGGGAAGAT	.	106.0	31.0	71.0	0.0	.	28	.	.	Atlas-SNP
DSP	1832	hgsc.bcm.edu	hg19	6	7571705	7571705	+	Silent	SNP	A	A	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	DSP	NM_004415	exon14	c.A1791T	p.S597S	AGGCTCAGAGATG	.	173.0	43.0	85.0	0.0	.	306	.	.	Atlas-SNP
JARID2	3720	hgsc.bcm.edu	hg19	6	15496837	15496837	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	JARID2	NM_004973	exon7	c.A1381G	p.K461E	AAGATGAAAGGGG	.	67.0	15.0	12.0	0.0	.	135	.	.	Atlas-SNP
BTN3A1	11119	hgsc.bcm.edu	hg19	6	26409957	26409957	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	BTN3A1	NM_007048	exon5	c.A912G	p.T304T	AAGCACAAGAGGT	.	48.0	9.0	20.0	0.0	.	80	.	.	Atlas-SNP
GABBR1	2550	hgsc.bcm.edu	hg19	6	29572726	29572726	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	GABBR1	NM_001470	exon21	c.T2479C	p.S827P	GGCTGGACAGAAT	.	74.0	27.0	48.0	0.0	.	95	.	.	Atlas-SNP
TTBK1	84630	hgsc.bcm.edu	hg19	6	43214466	43214466	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	TTBK1	NM_032538	exon2	c.T68C	p.I23T	CCGACATCCTGCC	.	206.0	24.0	113.0	0.0	.	124	.	.	Atlas-SNP
PLA2G7	7941	hgsc.bcm.edu	hg19	6	46682256	46682256	+	Silent	SNP	A	A	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	PLA2G7	NM_005084	exon5	c.T411A	p.P137P	CCTCAGAGGGGAA	.	121.0	23.0	58.0	0.0	.	49	.	.	Atlas-SNP
PRDM1	639	hgsc.bcm.edu	hg19	6	106536266	106536266	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.,1	PRDM1	NM_001198	exon2	c.A233T	p.Q78L	CGGTTCAGGCGGA	.	73.0	33.0	76.0	0.0	.	195	.	.	Atlas-SNP
RADIL	55698	hgsc.bcm.edu	hg19	7	4854972	4854972	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	RADIL	NM_018059	exon9	c.C2076G	p.H692Q	GAAGAAGTGCTCT	.	46.0	17.0	42.0	0.0	.	110	.	.	Atlas-SNP
AHR	196	hgsc.bcm.edu	hg19	7	17379497	17379497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	AHR	NM_001621	exon10	c.A2048G	p.Q683R	TCAGTCAAGAGTT	.	52.0	19.0	71.0	0.0	.	89	.	.	Atlas-SNP
STK31	56164	hgsc.bcm.edu	hg19	7	23825118	23825118	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	STK31	NM_031414	exon18	c.A2170G	p.M724V	CTTACAATGAGCT	.	90.0	21.0	100.0	0.0	.	175	.	.	Atlas-SNP
MAGI2	9863	hgsc.bcm.edu	hg19	7	79082460	79082460	+	Missense_Mutation	SNP	T	T	G	rs373785355	alternate_allele	TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	MAGI2	NM_012301	exon1	c.A177C	p.K59N	CACCAATTTGCTG	.	79.0	22.0	72.0	0.0	.	246	.	.	Atlas-SNP
AKAP9	10142	hgsc.bcm.edu	hg19	7	91669986	91669986	+	Splice_Site	SNP	A	A	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	AKAP9	NM_005751	exon18	c.4693-2A>C	.	TATTAAAGATTCA	.	86.0	34.0	91.0	0.0	.	788	.	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	hg19	7	100683826	100683826	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	MUC17	NM_001040105	exon3	c.A9129T	p.E3043D	TAGTGAAGGAAGT	.	46.0	21.0	50.0	0.0	.	804	.	.	Atlas-SNP
DENND2A	27147	hgsc.bcm.edu	hg19	7	140221816	140221816	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	DENND2A	NM_015689	exon16	c.T2750C	p.F917S	GTCAGGAACAAAG	.	77.0	29.0	66.0	0.0	.	132	.	.	Atlas-SNP
ZNF398	57541	hgsc.bcm.edu	hg19	7	148876417	148876417	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ZNF398	NM_170686	exon6	c.T1453C	p.C485R	TTCTCCTGCCCTC	.	39.0	12.0	41.0	0.0	.	54	.	.	Atlas-SNP
AGAP3	116988	hgsc.bcm.edu	hg19	7	150817090	150817090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	AGAP3	NM_001042535	exon8	c.G986T	p.G329V	GCGGCGGCAGCGC	.	38.0	16.0	49.0	0.0	.	121	.	.	Atlas-SNP
RP1	6101	hgsc.bcm.edu	hg19	8	55534100	55534100	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	RP1	NM_006269	exon2	c.C574A	p.Q192K	GTCATGCAGCGCC	.	92.0	44.0	61.0	0.0	.	429	.	.	Atlas-SNP
LRRCC1	85444	hgsc.bcm.edu	hg19	8	86048194	86048194	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	LRRCC1	NM_033402	exon14	c.A2325G	p.Q775Q	GGCACAACAAGGT	.	235.0	39.0	133.0	0.0	.	212	.	.	Atlas-SNP
MMP16	4325	hgsc.bcm.edu	hg19	8	89053953	89053953	+	Silent	SNP	T	T	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	MMP16	NM_005941	exon10	c.A1560T	p.G520G	TGGATATCCAGGT	.	152.0	65.0	106.0	0.0	.	176	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113314168	113314168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	CSMD3	NM_198123	exon53	c.C8294A	p.P2765H	TTTGGAGGTGTAG	.	104.0	17.0	41.0	0.0	.	2325	.	.	Atlas-SNP
ARC	23237	hgsc.bcm.edu	hg19	8	143695326	143695326	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ARC	NM_015193	exon1	c.G307C	p.A103P	GGTTGGCGATGGT	.	38.0	6.0	20.0	0.0	.	34	.	.	Atlas-SNP
RECK	8434	hgsc.bcm.edu	hg19	9	36122844	36122844	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	RECK	NM_021111	exon21	c.A2718G	p.A906A	AGAAGCAGAGAAG	.	46.0	23.0	65.0	0.0	.	73	.	.	Atlas-SNP
TRPM6	140803	hgsc.bcm.edu	hg19	9	77397736	77397736	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	TRPM6	NM_017662	exon22	c.G2953C	p.A985P	CTATGGCCATGAT	.	59.0	38.0	105.0	0.0	.	377	.	.	Atlas-SNP
TUBB8	347688	hgsc.bcm.edu	hg19	10	93331	93331	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	TUBB8	NM_177987	exon4	c.A1001G	p.Q334R	TTATCTTGAATGT	.	95.0	7.0	100.0	0.0	.	62	.	.	Atlas-SNP
DIP2C	22982	hgsc.bcm.edu	hg19	10	329266	329266	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	DIP2C,rectum,adenoma,0,1	DIP2C	NM_014974	exon35	c.C4240A	p.R1414S	CTGTGCGTGCCCA	.	100.0	37.0	69.0	0.0	.	195	.	.	Atlas-SNP
ENTPD1	953	hgsc.bcm.edu	hg19	10	97602202	97602202	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ENTPD1	NM_001164178	exon4	c.C400A	p.Q134K	CAGCACCAAGAGA	.	135.0	52.0	129.0	0.0	.	44	.	.	Atlas-SNP
ZRANB1	54764	hgsc.bcm.edu	hg19	10	126631850	126631850	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ZRANB1	NM_017580	exon1	c.A788T	p.D263V	AGACTGATTGGCT	.	42.0	15.0	38.0	0.0	.	60	.	.	Atlas-SNP
KRTAP5-2	440021	hgsc.bcm.edu	hg19	11	1619366	1619366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	KRTAP5-2	NM_001004325	exon1	c.G115A	p.G39S	CAGAGCCACAGCC	.	38.0	13.0	40.0	0.0	.	38	.	.	Atlas-SNP
LSP1	4046	hgsc.bcm.edu	hg19	11	1887904	1887904	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	LSP1	NM_001242932	exon2	c.T200C	p.V67A	AATGTGTTTTCCC	.	60.0	20.0	70.0	0.0	.	59	.	.	Atlas-SNP
OR8K3	219473	hgsc.bcm.edu	hg19	11	56085886	56085886	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	OR8K3	NM_001005202	exon1	c.A104G	p.Y35C	TGATCTATGTGAT	.	67.0	36.0	80.0	0.0	.	92	.	.	Atlas-SNP
TENM4	26011	hgsc.bcm.edu	hg19	11	78369307	78369307	+	Silent	SNP	C	C	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	ODZ4_ENST00000278550,colon,carcinoma,0,2	.	NM_001098816	exon34	c.G8106C	p.A2702A	GGCCCACGCTTGG	.	69.0	28.0	44.0	0.0	.	.	.	.	Atlas-SNP
FAT3	120114	hgsc.bcm.edu	hg19	11	92616284	92616284	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	FAT3	NM_001008781	exon23	c.T12662C	p.V4221A	GCAACGTCTACCA	.	46.0	13.0	31.0	0.0	.	1822	.	.	Atlas-SNP
PKNOX2	63876	hgsc.bcm.edu	hg19	11	125267956	125267956	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	PKNOX2	NM_022062	exon7	c.C586G	p.Q196E	CACTCACAGGTAA	.	89.0	30.0	68.0	0.0	.	60	.	.	Atlas-SNP
NTM	50863	hgsc.bcm.edu	hg19	11	132205003	132205003	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	NTM	NM_001144058	exon8	c.T1031A	p.L344Q	GGCTGCTGCCTCT	.	35.0	20.0	29.0	0.0	.	253	.	.	Atlas-SNP
NCAPD3	23310	hgsc.bcm.edu	hg19	11	134076627	134076627	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	NCAPD3	NM_015261	exon8	c.G883T	p.V295F	TGATGACCTAGAA	.	81.0	43.0	70.0	0.0	.	141	.	.	Atlas-SNP
NECAP1	25977	hgsc.bcm.edu	hg19	12	8242584	8242584	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	NECAP1	NM_015509	exon2	c.A148T	p.T50S	CGAATCACTTCAA	.	52.0	22.0	76.0	0.0	.	21	.	.	Atlas-SNP
OVCH1	341350	hgsc.bcm.edu	hg19	12	29628110	29628110	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	OVCH1	NM_183378	exon14	c.G1484T	p.G495V	AACATTCCACAAA	.	143.0	42.0	135.0	0.0	.	195	.	.	Atlas-SNP
CCDC65	85478	hgsc.bcm.edu	hg19	12	49298898	49298898	+	Splice_Site	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	CCDC65	NM_033124	exon2	c.300+2T>C	.	TCAAGGTAGGCAC	.	37.0	18.0	52.0	0.0	.	41	.	.	Atlas-SNP
HOXC8	3224	hgsc.bcm.edu	hg19	12	54403335	54403335	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	HOXC8	NM_022658	exon1	c.T267C	p.Y89Y	ATTCTATGGCTAC	.	66.0	22.0	65.0	0.0	.	15	.	.	Atlas-SNP
GLS2	27165	hgsc.bcm.edu	hg19	12	56868406	56868406	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	GLS2	NM_013267	exon12	c.T1146C	p.S382S	TTCAGCACTCAGC	.	28.0	10.0	25.0	0.0	.	42	.	.	Atlas-SNP
LRP1	4035	hgsc.bcm.edu	hg19	12	57603645	57603645	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	LRP1	NM_002332	exon80	c.C12433T	p.P4145S	AAGCAGCCCGAAG	.	26.0	10.0	28.0	0.0	.	428	.	.	Atlas-SNP
MDM1	56890	hgsc.bcm.edu	hg19	12	68715374	68715374	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	MDM1	NM_017440	exon6	c.C836T	p.A279V	ATCTCTGCTTCCA	.	89.0	20.0	73.0	0.0	.	74	.	.	Atlas-SNP
C12orf42	374470	hgsc.bcm.edu	hg19	12	103762676	103762676	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	C12orf42	NM_001099336	exon4	c.T248A	p.L83Q	AAATTCAGAAAGT	.	242.0	72.0	256.0	0.0	.	50	.	.	Atlas-SNP
WSCD2	9671	hgsc.bcm.edu	hg19	12	108589818	108589818	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	WSCD2	NM_014653	exon2	c.T209C	p.M70T	GTGACATGCATCT	.	48.0	17.0	63.0	0.0	.	125	.	.	Atlas-SNP
IFT88	8100	hgsc.bcm.edu	hg19	13	21175874	21175874	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	IFT88	NM_175605	exon14	c.A870G	p.T290T	AGTTACATTTATT	.	180.0	53.0	208.0	0.0	.	83	.	.	Atlas-SNP
COL4A2	1284	hgsc.bcm.edu	hg19	13	111090978	111090978	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	COL4A2	NM_001846	exon15	c.A875C	p.K292T	CCTTGAAGGGAGA	.	119.0	40.0	114.0	0.0	.	178	.	.	Atlas-SNP
SRP54	6729	hgsc.bcm.edu	hg19	14	35492189	35492189	+	Silent	SNP	G	G	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	SRP54,rectum,carcinoma,0,1	SRP54	NM_003136	exon14	c.G1230C	p.S410S	AGGATCGGGTGTA	.	70.0	24.0	77.0	0.0	.	38	.	.	Atlas-SNP
MTA1	9112	hgsc.bcm.edu	hg19	14	105931048	105931048	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	MTA1	NM_004689	exon15	c.C1382G	p.P461R	GGAGCCCCAAGTT	.	81.0	24.0	49.0	0.0	.	61	.	.	Atlas-SNP
TJP1	7082	hgsc.bcm.edu	hg19	15	30010589	30010589	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	TJP1	NM_003257	exon21	c.G3757T	p.E1253X	CCTCTTCTTCGGT	.	93.0	29.0	75.0	0.0	.	140	.	.	Atlas-SNP
FBN1	2200	hgsc.bcm.edu	hg19	15	48764821	48764821	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	FBN1	NM_000138	exon35	c.C4263T	p.L1421L	TGCATTGAGGCAC	.	67.0	17.0	57.0	0.0	.	310	.	.	Atlas-SNP
PRTG	283659	hgsc.bcm.edu	hg19	15	55912922	55912922	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	PRTG	NM_173814	exon19	c.A3137G	p.K1046R	TTGTTTTTAATTA	.	133.0	42.0	107.0	0.0	.	110	.	.	Atlas-SNP
RASGRF1	5923	hgsc.bcm.edu	hg19	15	79327481	79327481	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	RASGRF1	NM_001145648	exon6	c.T950A	p.L317Q	AGGACCAGCGTGG	.	45.0	21.0	48.0	0.0	.	168	.	.	Atlas-SNP
RASGRF1	5923	hgsc.bcm.edu	hg19	15	79339166	79339166	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	RASGRF1	NM_001145648	exon5	c.T800G	p.L267R	GGGCGCAGGAAAT	.	46.0	20.0	38.0	0.0	.	168	.	.	Atlas-SNP
TM6SF1	53346	hgsc.bcm.edu	hg19	15	83795555	83795555	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	TM6SF1	NM_023003	exon8	c.C757T	p.Q253X	CAATTTCAAGAGC	.	98.0	40.0	62.0	0.0	.	38	.	.	Atlas-SNP
ACSM2B	348158	hgsc.bcm.edu	hg19	16	20554485	20554485	+	Missense_Mutation	SNP	G	G	A	rs143500332		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ACSM2B	NM_182617	exon12	c.C1381T	p.R461W	CTGCCCGTCCCAT	.	155.0	47.0	263.0	0.0	.	121	.	G|1.000;A|0.000	Atlas-SNP
CAMKK1	84254	hgsc.bcm.edu	hg19	17	3779538	3779538	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	CAMKK1	NM_172207	exon11	c.C1089A	p.S363S	CTGGCCGGAATCA	.	38.0	23.0	47.0	0.0	.	70	.	.	Atlas-SNP
KIF1C	10749	hgsc.bcm.edu	hg19	17	4905414	4905414	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	KIF1C	NM_006612	exon6	c.G424A	p.V142M	TACTCTGTGGAGG	.	43.0	20.0	76.0	0.0	.	70	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7578457	7578457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	TP53_ENST00000545858,NS,adenocarcinoma,0,2	TP53	NM_000546	exon5	c.G473A	p.R158H	ATGGCGCGGACGC	.	41.0	18.0	60.0	1.0	.	33396	.	.	Atlas-SNP
MYO18A	399687	hgsc.bcm.edu	hg19	17	27420004	27420004	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	MYO18A	NM_078471	exon33	c.T4942G	p.F1648V	ACTCAAAGTCCCG	.	36.0	9.0	37.0	0.0	.	217	.	.	Atlas-SNP
LRRC37B	114659	hgsc.bcm.edu	hg19	17	30348372	30348372	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	LRRC37B	NM_052888	exon1	c.G207T	p.P69P	AGCCCCGGGGGAC	.	87.0	6.0	67.0	0.0	.	67	.	.	Atlas-SNP
HOXB7	3217	hgsc.bcm.edu	hg19	17	46685380	46685380	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	HOXB7,colon,carcinoma,0,1	HOXB7	NM_004502	exon2	c.C478T	p.R160C	GGTAGCGATTGTA	.	105.0	24.0	66.0	0.0	.	15	.	.	Atlas-SNP
MPO	4353	hgsc.bcm.edu	hg19	17	56348028	56348028	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	MPO	NM_000250	exon12	c.G2227C	p.E743Q	AGGCTTCCCTCCA	.	104.0	23.0	80.0	0.0	.	114	.	.	Atlas-SNP
TBX2	6909	hgsc.bcm.edu	hg19	17	59485645	59485645	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	TBX2	NM_005994	exon7	c.C1917T	p.T639T	CACCACCGGGCTG	.	187.0	54.0	96.0	0.0	.	30	.	.	Atlas-SNP
FASN	2194	hgsc.bcm.edu	hg19	17	80040839	80040839	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	FASN	NM_004104	exon33	c.G5718A	p.Q1906Q	CCCACGCTGTATC	.	68.0	21.0	40.0	0.0	.	154	.	.	Atlas-SNP
TBCD	6904	hgsc.bcm.edu	hg19	17	80851463	80851463	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	TBCD	NM_005993	exon17	c.A1604T	p.D535V	CAGCTGACTATTT	.	430.0	231.0	312.0	0.0	.	94	.	.	Atlas-SNP
LAMA1	284217	hgsc.bcm.edu	hg19	18	7033066	7033066	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	LAMA1	NM_005559	exon15	c.A2080T	p.S694C	TAGAGCTGGCTAT	.	36.0	11.0	51.0	0.0	.	458	.	.	Atlas-SNP
TXNDC2	84203	hgsc.bcm.edu	hg19	18	9886946	9886946	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	TXNDC2	NM_001098529	exon2	c.T470C	p.I157T	AACCCATCCAGCC	.	140.0	55.0	139.0	0.0	.	168	.	.	Atlas-SNP
CCDC178	374864	hgsc.bcm.edu	hg19	18	30554599	30554599	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	.	NM_001105528	exon21	c.T2435A	p.F812Y	AGTTTGAAGTGCT	.	67.0	34.0	45.0	0.0	.	.	.	.	Atlas-SNP
DIRAS1	148252	hgsc.bcm.edu	hg19	19	2717599	2717599	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	DIRAS1,bladder,carcinoma,0,1	DIRAS1	NM_145173	exon2	c.C206G	p.P69R	ATGGCCGGGAACT	.	38.0	15.0	31.0	0.0	.	26	.	.	Atlas-SNP
ZNF266	10781	hgsc.bcm.edu	hg19	19	9525003	9525003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ZNF266	NM_001271314	exon11	c.G598A	p.A200T	GCACAGCAAGGTC	.	73.0	25.0	67.0	0.0	.	65	.	.	Atlas-SNP
ZNF653	115950	hgsc.bcm.edu	hg19	19	11598499	11598499	+	Missense_Mutation	SNP	G	G	A	rs377200586		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ZNF653	NM_138783	exon4	c.C779T	p.P260L	CACAGCGGGGTAC	.	144.0	55.0	119.0	0.0	.	48	.	.	Atlas-SNP
CACNA1A	773	hgsc.bcm.edu	hg19	19	13365942	13365942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	CACNA1A	NM_001127221	exon29	c.G4725A	p.M1575I	GGCGATCATGGCC	.	24.0	9.0	26.0	0.0	.	715	.	.	Atlas-SNP
CALR3	125972	hgsc.bcm.edu	hg19	19	16601349	16601349	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	CALR3	NM_145046	exon3	c.G226A	p.A76T	AGATGGCATAGAA	.	92.0	30.0	93.0	0.0	.	41	.	.	Atlas-SNP
MAG	4099	hgsc.bcm.edu	hg19	19	35786342	35786342	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	MAG	NM_080600	exon3	c.T31C	p.W11R	CTGTTCTGGATTA	.	59.0	21.0	65.0	0.0	.	172	.	.	Atlas-SNP
COX6B1	1340	hgsc.bcm.edu	hg19	19	36142167	36142167	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	COX6B1	NM_001863	exon2	c.A22G	p.K8E	GAGACCAAAATCA	.	79.0	19.0	70.0	0.0	.	20	.	.	Atlas-SNP
ZNF571	51276	hgsc.bcm.edu	hg19	19	38056846	38056846	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ZNF571	NM_016536	exon4	c.A484T	p.N162Y	CTATATTATGATT	.	79.0	29.0	65.0	0.0	.	54	.	.	Atlas-SNP
DEDD2	162989	hgsc.bcm.edu	hg19	19	42713936	42713936	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	DEDD2	NM_133328	exon4	c.A505T	p.R169X	GCCGTCTGGCACC	.	37.0	11.0	26.0	0.0	.	16	.	.	Atlas-SNP
ZNF468	90333	hgsc.bcm.edu	hg19	19	53352366	53352366	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ZNF468	NM_001008801	exon3	c.A116C	p.E39A	TAATTCTCCAGCA	.	17.0	7.0	13.0	0.0	.	46	.	.	Atlas-SNP
KIR2DL1	3802	hgsc.bcm.edu	hg19	19	55284949	55284949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	KIR2DL1	NM_014218	exon3	c.G235A	p.G79R	CATGATGGGGTCT	.	26.0	21.0	33.0	0.0	.	46	.	.	Atlas-SNP
FERMT1	55612	hgsc.bcm.edu	hg19	20	6057861	6057861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	FERMT1	NM_017671	exon15	c.G1993A	p.D665N	CCTCATCGAGTGT	.	74.0	30.0	56.0	0.0	.	106	.	.	Atlas-SNP
PAK7	57144	hgsc.bcm.edu	hg19	20	9546703	9546703	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	PAK7	NM_177990	exon5	c.T1319C	p.V440A	GGGCTGACCACCA	.	59.0	18.0	73.0	0.0	.	194	.	.	Atlas-SNP
CDK5RAP1	51654	hgsc.bcm.edu	hg19	20	31967440	31967440	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	CDK5RAP1	NM_016408	exon8	c.G934C	p.E312Q	GGACCTCCGAATT	.	107.0	44.0	90.0	0.0	.	62	.	.	Atlas-SNP
PREX1	57580	hgsc.bcm.edu	hg19	20	47267445	47267445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	PREX1	NM_020820	exon23	c.C2804T	p.A935V	TAGCAGGCAATCC	.	44.0	14.0	48.0	0.0	.	441	.	.	Atlas-SNP
BAGE3	85318	hgsc.bcm.edu	hg19	21	11049620	11049620	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	.	NM_182481	exon4	c.G281A	p.R94Q	TTCCTTCGCTATA	.	551.0	31.0	545.0	0.0	.	.	.	.	Atlas-SNP
USP25	29761	hgsc.bcm.edu	hg19	21	17250204	17250204	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	USP25	NM_013396	exon23	c.C2889T	p.V963V	TATTGTCCCATTT	.	167.0	59.0	170.0	0.0	.	156	.	.	Atlas-SNP
ADAMTS1	9510	hgsc.bcm.edu	hg19	21	28210528	28210528	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ADAMTS1	NM_006988	exon9	c.G2274A	p.Q758Q	TCCCCTCTGGTTC	.	68.0	29.0	64.0	0.0	.	131	.	.	Atlas-SNP
C2CD2	25966	hgsc.bcm.edu	hg19	21	43332526	43332526	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	C2CD2	NM_015500	exon7	c.G868T	p.V290L	GCTGCACGACGCA	.	48.0	20.0	46.0	0.0	.	47	.	.	Atlas-SNP
MAGEB4	4115	hgsc.bcm.edu	hg19	X	30260451	30260451	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	MAGEB4	NM_002367	exon1	c.C199A	p.P67T	GAGCCACCCACCA	.	64.0	45.0	58.0	0.0	.	75	.	.	Atlas-SNP
KDM6A	7403	hgsc.bcm.edu	hg19	X	44870266	44870266	+	Splice_Site	SNP	T	T	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	KDM6A	NM_021140	exon5	c.443+2T>G	.	CAGTGGTAAGTTG	.	40.0	26.0	49.0	0.0	.	274	.	.	Atlas-SNP
KIF4A	24137	hgsc.bcm.edu	hg19	X	69595074	69595074	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	KIF4A	NM_012310	exon17	c.A1799G	p.K600R	GCCGCAAACGTCT	.	70.0	54.0	62.0	0.0	.	118	.	.	Atlas-SNP
CXCR3	2833	hgsc.bcm.edu	hg19	X	70836903	70836903	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	CXCR3	NM_001142797	exon2	c.T560A	p.L187H	AGCAGGAGGGCTC	.	17.0	13.0	28.0	0.0	.	57	.	.	Atlas-SNP
ESX1	80712	hgsc.bcm.edu	hg19	X	103495144	103495144	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ESX1	NM_153448	exon4	c.G986C	p.R329P	GGCACACGCGCCA	.	20.0	7.0	1.0	0.0	.	57	.	.	Atlas-SNP
RGAG1	57529	hgsc.bcm.edu	hg19	X	109695556	109695556	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	RGAG1	NM_020769	exon3	c.A1711G	p.T571A	GCCATGACTTCTG	.	63.0	6.0	70.0	0.0	.	168	.	.	Atlas-SNP
AFF2	2334	hgsc.bcm.edu	hg19	X	148072845	148072845	+	Missense_Mutation	SNP	G	G	C	rs149966195	bycluster;by1000genomes;alternate_allele	TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	AFF2	NM_002025	exon21	c.G3919C	p.D1307H	CGCATCGATGCCC	.	34.0	25.0	28.0	0.0	.	679	.	G|1.000;A|0.000	Atlas-SNP
PLXNA3	55558	hgsc.bcm.edu	hg19	X	153698841	153698841	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	PLXNA3	NM_017514	exon30	c.C5043A	p.H1681Q	AGCCCACCGGGGC	.	94.0	68.0	105.0	0.0	.	156	.	.	Atlas-SNP
DDX3Y	8653	hgsc.bcm.edu	hg19	Y	15024659	15024659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	DDX3Y	NM_004660	exon5	c.G302T	p.S101I	GACGGAGTGACTA	.	109.0	85.0	97.0	0.0	.	13	.	.	Atlas-SNP
NLGN4Y	22829	hgsc.bcm.edu	hg19	Y	16941900	16941900	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	NLGN4Y	NM_014893	exon5	c.A1102G	p.M368V	GACATCATGCTGG	.	199.0	107.0	188.0	1.0	.	44	.	.	Atlas-SNP
TSC2	7249	hgsc.bcm.edu	hg19	16	2122984	2122984	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	TSC2	NM_001114382	exon21	c.2354delA	p.Q785fs	.	.	36.0	15.0	35.0	0.0	.	364	.	.	Atlas-Indel,Pindel
FAM194A	131831	hgsc.bcm.edu	hg19	3	150421522	150421523	+	In_Frame_Ins	INS	-	-	CCTCCT	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	FAM194A	NM_152394	exon1	c.164_165insAGGAGG	p.V55delinsEEV	.	.	40.0	14.0	33.0	0.0	.	91	.	.	Atlas-INDEL
APOBEC3B	9582	hgsc.bcm.edu	hg19	22	39388141	39388141	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	APOBEC3B,colon,carcinoma,-1,1	APOBEC3B	NM_004900	exon7	c.1120delC	p.R374fs	.	.	91.0	20.0	77.0	0.0	.	32	.	.	Atlas-INDEL
SPAG6	9576	hgsc.bcm.edu	hg19	10	22678098	22678098	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	SPAG6	NM_172242	exon7	c.861delG	p.Q287fs	.	.	107.0	37.0	73.0	0.0	.	90	.	.	Atlas-INDEL
OPCML	4978	hgsc.bcm.edu	hg19	11	132526997	132526997	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	OPCML	NM_002545	exon2	c.386delA	p.H129fs	.	.	147.0	45.0	135.0	0.0	.	166	.	.	Atlas-Indel,Pindel
ATF6	22926	hgsc.bcm.edu	hg19	1	161762113	161762114	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	ATF6	NM_007348	exon6	c.684_685insA	p.T228fs	.	.	32.0	11.0	30.0	0.0	.	84	.	.	Atlas-Indel,Pindel
CDH11	1009	hgsc.bcm.edu	hg19	16	65025685	65025685	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	CDH11	NM_001797	exon6	c.798delA	p.P266fs	.	.	50.0	22.0	78.0	0.0	.	260	.	.	Atlas-INDEL
SPAG6	9576	hgsc.bcm.edu	hg19	10	22678098	22678099	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	SPAG6	NM_172242	exon7	c.861_862del	p.287_288del	.	.	110.0	26.0	73.0	0.0	.	90	.	.	Pindel
CDH11	1009	hgsc.bcm.edu	hg19	16	65025685	65025686	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-MI-A75I-01A-11D-A32G-10	TCGA-MI-A75I-10A-01D-A32G-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c9dad44d-b8c3-40f4-83ee-da8c82890611	dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3	.	CDH11	NM_001797	exon6	c.797_798del	p.266_266del	.	.	51.0	17.0	79.0	0.0	.	260	.	.	Pindel