Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm PTPRU 10076 hgsc.bcm.edu hg19 1 29609329 29609329 + Silent SNP G G C rs142462225 alternate_allele TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . PTPRU NM_001195001 exon12 c.G2010C p.A670A ACTGGCGGCCAGC . 60.0 21.0 63.0 0.0 . 374 . G|1.000;A|0.000 Atlas-SNP STK40 83931 hgsc.bcm.edu hg19 1 36809505 36809505 + Silent SNP G G A novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . STK40 NM_032017 exon10 c.C960T p.A320A GGCGGCGGCCAGG . 86.0 33.0 95.0 0.0 . 53 . . Atlas-SNP ZMPSTE24 10269 hgsc.bcm.edu hg19 1 40735691 40735691 + Silent SNP G G T novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . ZMPSTE24 NM_005857 exon5 c.G519T p.V173V TGTTGTGACTCAG . 208.0 60.0 208.0 0.0 . 50 . . Atlas-SNP MCOLN2 255231 hgsc.bcm.edu hg19 1 85403450 85403450 + Silent SNP T T G novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . MCOLN2 NM_153259 exon11 c.A1323C p.P441P ATGGTATGGTCCT . 77.0 26.0 82.0 0.0 . 60 . . Atlas-SNP COL11A1 1301 hgsc.bcm.edu hg19 1 103428289 103428289 + Missense_Mutation SNP C C T novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . COL11A1 NM_080629 exon39 c.G2980A p.G994R GTTCCCCTATTGG . 186.0 57.0 195.0 0.0 . 972 . . Atlas-SNP MOV10 4343 hgsc.bcm.edu hg19 1 113231596 113231596 + Silent SNP T T C novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . MOV10 NM_020963 exon3 c.T177C p.Y59Y GCTGTATGGAATG . 104.0 32.0 105.0 0.0 . 74 . . Atlas-SNP ADAMTSL4 54507 hgsc.bcm.edu hg19 1 150531864 150531864 + Missense_Mutation SNP C C G novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . ADAMTSL4 NM_019032 exon17 c.C2865G p.H955Q TTCTCACCTCCCC . 97.0 18.0 75.0 0.0 . 101 . . Atlas-SNP SCNM1 79005 hgsc.bcm.edu hg19 1 151139457 151139457 + Missense_Mutation SNP C C T novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . SCNM1 NM_024041 exon3 c.C170T p.A57V CCCTGGCCATGCT . 80.0 20.0 67.0 0.0 . 22 . . Atlas-SNP LCE5A 254910 hgsc.bcm.edu hg19 1 152484038 152484038 + Missense_Mutation SNP T T C novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . LCE5A NM_178438 exon2 c.T28C p.C10R CAGCAGTGCCAGC . 106.0 35.0 90.0 0.0 . 15 . . Atlas-SNP APCS 325 hgsc.bcm.edu hg19 1 159558103 159558103 + Missense_Mutation SNP T T C novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . APCS NM_001639 exon2 c.T277C p.Y93H AGTCTATACATTG . 73.0 18.0 52.0 0.0 . 48 . . Atlas-SNP DNM3 26052 hgsc.bcm.edu hg19 1 172017769 172017769 + Missense_Mutation SNP C C A novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . DNM3 NM_001136127 exon10 c.C1214A p.P405Q TTACTCCAGACAT . 229.0 100.0 190.0 0.0 . 85 . . Atlas-SNP PRSS38 339501 hgsc.bcm.edu hg19 1 228004984 228004984 + Missense_Mutation SNP G G T novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . PRSS38 NM_183062 exon3 c.G386T p.W129L CCCAGTGGTATGA . 84.0 40.0 71.0 0.0 . 55 . . Atlas-SNP OBSCN 84033 hgsc.bcm.edu hg19 1 228481978 228481978 + Missense_Mutation SNP A A G novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . OBSCN NM_001271223 exon47 c.A12544G p.R4182G ACCCTCAGAGATG . 127.0 36.0 145.0 0.0 . 2142 . . Atlas-SNP MBD5 55777 hgsc.bcm.edu hg19 2 149227546 149227546 + Silent SNP T T C novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . MBD5 NM_018328 exon9 c.T2034C p.S678S TAGTTCTGCAGTT . 58.0 13.0 61.0 0.0 . 164 . . Atlas-SNP PKP4 8502 hgsc.bcm.edu hg19 2 159526346 159526346 + Missense_Mutation SNP A A G novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . PKP4 NM_001005476 exon17 c.A2843G p.K948R CCAGCAAAAACAT . 139.0 44.0 157.0 0.0 . 133 . . Atlas-SNP CSRNP3 80034 hgsc.bcm.edu hg19 2 166533005 166533005 + Missense_Mutation SNP G G A novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . CSRNP3 NM_001172173 exon6 c.G592A p.E198K GTGGAAGAAAAGC . 87.0 29.0 91.0 0.0 . 73 . . Atlas-SNP XIRP2 129446 hgsc.bcm.edu hg19 2 168115372 168115372 + Silent SNP G G A rs371997749 TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . XIRP2 NM_001199143 exon11 c.G2415A p.S805S TTATTCGAGGAAT . 143.0 47.0 138.0 0.0 . 914 . . Atlas-SNP LRP2 4036 hgsc.bcm.edu hg19 2 170072882 170072882 + Missense_Mutation SNP C C T novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . LRP2 NM_004525 exon35 c.G5707A p.A1903T TGTTAGCACTGGC . 144.0 44.0 140.0 0.0 . 751 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179432581 179432581 + Missense_Mutation SNP C C T novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . TTN NM_001267550 exon326 c.G78278A p.G26093E GGGGTTCCTGGTG . 112.0 40.0 120.0 0.0 . 18412 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179554080 179554080 + Missense_Mutation SNP T T G novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . TTN NM_001267550 exon124 c.A31948C p.K10650Q GAACTTTCTTCTT . 106.0 35.0 106.0 0.0 . 18412 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179614607 179614607 + Missense_Mutation SNP C C A novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . TTN NM_133379 exon46 c.G12520T p.D4174Y TGGAATCCCCTTC . 151.0 59.0 154.0 0.0 . 18412 . . Atlas-SNP GLB1L 79411 hgsc.bcm.edu hg19 2 220102300 220102300 + Nonsense_Mutation SNP G G T rs183755555 bycluster;by1000genomes;alternate_allele TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . GLB1L NM_024506 exon16 c.C1623A p.Y541X TTTGGAGTAGAAT . 119.0 35.0 113.0 0.0 . 52 . G|0.999;A|0.001 Atlas-SNP GMPPA 29926 hgsc.bcm.edu hg19 2 220370193 220370193 + Missense_Mutation SNP G G A novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . GMPPA NM_205847 exon9 c.G769A p.A257T CTCTACGCCTCCC . 72.0 17.0 82.0 0.0 . 50 . . Atlas-SNP OBSL1 23363 hgsc.bcm.edu hg19 2 220422736 220422736 + Missense_Mutation SNP G G A rs373804245 alternate_allele TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . OBSL1 NM_001173431 exon11 c.C3599T p.A1200V GCGCCAGCCCGGG . 46.0 12.0 47.0 0.0 . 120 . . Atlas-SNP FANCD2 2177 hgsc.bcm.edu hg19 3 10102063 10102063 + Missense_Mutation SNP T T C novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . FANCD2 NM_001018115 exon19 c.T1742C p.M581T TGACCATGGCTGG . 64.0 26.0 61.0 0.0 . 253 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41266098 41266098 + Missense_Mutation SNP A A T rs121913396 bycluster TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 CTNNB1,gallbladder,other,+1,128 CTNNB1 NM_001098209 exon3 c.A95T p.D32V ACCTGGACTCTGG . 179.0 61.0 183.0 1.0 . 4904 . . Atlas-SNP ZNF502 91392 hgsc.bcm.edu hg19 3 44762400 44762400 + Missense_Mutation SNP G G A novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . ZNF502 NM_001134440 exon4 c.G91A p.D31N GAGCAGGATGTCT . 100.0 36.0 107.0 0.0 . 58 . . Atlas-SNP CLEC3B 7123 hgsc.bcm.edu hg19 3 45077186 45077186 + Missense_Mutation SNP A A T novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . CLEC3B NM_003278 exon3 c.A379T p.N127Y GTGGGCAACGAGG . 46.0 19.0 52.0 0.0 . 15 . . Atlas-SNP SLMAP 7871 hgsc.bcm.edu hg19 3 57898307 57898307 + Silent SNP T T A novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . SLMAP NM_007159 exon17 c.T1797A p.L599L TGAGCTTGAGCGG . 40.0 18.0 53.0 0.0 . 46 . . Atlas-SNP MECOM 2122 hgsc.bcm.edu hg19 3 168838896 168838896 + Silent SNP C C A rs185054275 bycluster;by1000genomes;alternate_allele TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . MECOM NM_004991 exon7 c.G1080T p.S360S GCCCGACGAAGTG . 68.0 30.0 81.0 0.0 . 216 . C|0.999;T|0.001 Atlas-SNP LRRC31 79782 hgsc.bcm.edu hg19 3 169565966 169565966 + Silent SNP A A T novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . LRRC31 NM_024727 exon8 c.G1269A p.S423S TTGAAGAGACATG . 48.0 24.0 65.0 0.0 . 66 . . Atlas-SNP ATP8A1 10396 hgsc.bcm.edu hg19 4 42583637 42583637 + Splice_Site SNP C C A novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . ATP8A1 NM_001105529 exon11 c.834+1G>T . ATTTCACCTGCAT . 65.0 30.0 70.0 0.0 . 206 . . Atlas-SNP FRAS1 80144 hgsc.bcm.edu hg19 4 79391155 79391155 + Silent SNP G G A novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . FRAS1 NM_025074 exon51 c.G7281A p.P2427P TCAGCCGTTCCGA . 67.0 22.0 82.0 0.0 . 779 . . Atlas-SNP STPG2 285555 hgsc.bcm.edu hg19 4 98902423 98902423 + Missense_Mutation SNP T T A novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . . NM_174952 exon6 c.A659T p.N220I GGTTCATTATATG . 83.0 28.0 125.0 0.0 . . . . Atlas-SNP KIAA1109 84162 hgsc.bcm.edu hg19 4 123128393 123128393 + Missense_Mutation SNP G G A novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . KIAA1109 NM_015312 exon14 c.G1627A p.D543N TGGATCGACTGTT . 165.0 40.0 207.0 0.0 . 424 . . Atlas-SNP DCHS2 54798 hgsc.bcm.edu hg19 4 155157921 155157921 + Missense_Mutation SNP C C T novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . DCHS2 NM_017639 exon25 c.G6518A p.S2173N CTAGCACTTGCTT . 69.0 29.0 68.0 0.0 . 594 . . Atlas-SNP FGA 2243 hgsc.bcm.edu hg19 4 155507134 155507134 + Missense_Mutation SNP C C T novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . FGA NM_000508 exon5 c.G1447A p.V483M AGGTCACCACTTC . 100.0 33.0 140.0 0.0 . 179 . . Atlas-SNP NUP155 9631 hgsc.bcm.edu hg19 5 37351407 37351407 + Missense_Mutation SNP T T C novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . NUP155 NM_153485 exon6 c.A608G p.D203G AAAGGATCTGGAA . 123.0 39.0 170.0 0.0 . 116 . . Atlas-SNP ERAP2 64167 hgsc.bcm.edu hg19 5 96232185 96232185 + Missense_Mutation SNP T T C novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . ERAP2 NM_001130140 exon8 c.T1348C p.F450L GAAATGTTTGATG . 200.0 63.0 233.0 0.0 . 77 . . Atlas-SNP PCDHGB1 56104 hgsc.bcm.edu hg19 5 140730776 140730776 + Missense_Mutation SNP G G T novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . PCDHGB1 NM_018922 exon1 c.G949T p.A317S GTGGAAGCTAAGG . 84.0 4.0 106.0 0.0 . 198 . . Atlas-SNP ARSI 340075 hgsc.bcm.edu hg19 5 149677632 149677632 + Silent SNP A A G novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . ARSI NM_001012301 exon2 c.T855C p.G285G GTAGAAACCGTAG . 64.0 27.0 80.0 0.0 . 65 . . Atlas-SNP GABRA6 2559 hgsc.bcm.edu hg19 5 161118965 161118965 + Missense_Mutation SNP C C A novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . GABRA6 NM_000811 exon8 c.C845A p.T282N TTTTAACTATGAC . 71.0 25.0 63.0 0.0 . 139 . . Atlas-SNP KCNIP1 30820 hgsc.bcm.edu hg19 5 170160865 170160865 + Missense_Mutation SNP T T C novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . KCNIP1 NM_001034837 exon8 c.T599C p.I200T ATGGCATCGTAAC . 45.0 11.0 46.0 0.0 . 66 . . Atlas-SNP HNRNPAB 3182 hgsc.bcm.edu hg19 5 177637219 177637219 + Missense_Mutation SNP G G T rs115721462 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . HNRNPAB NM_031266 exon7 c.G874T p.G292C TATGGCGGCTACG . 52.0 18.0 78.0 0.0 . 24 . G|0.999;A|0.001 Atlas-SNP PHF10 55274 hgsc.bcm.edu hg19 6 170114882 170114882 + Silent SNP G G T novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . PHF10 NM_018288 exon7 c.C750A p.V250V AGAACTGACCTTT . 76.0 38.0 126.0 0.0 . 76 . . Atlas-SNP VWDE 221806 hgsc.bcm.edu hg19 7 12375836 12375836 + Missense_Mutation SNP C C A novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . VWDE NM_001135924 exon27 c.G4585T p.G1529C CACCACCGTTTTT . 158.0 45.0 144.0 0.0 . 123 . . Atlas-SNP CPVL 54504 hgsc.bcm.edu hg19 7 29160618 29160618 + Silent SNP A A G novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . CPVL NM_019029 exon2 c.T60C p.C20C CCCATCACAGGGG . 105.0 34.0 144.0 0.0 . 60 . . Atlas-SNP BMPER 168667 hgsc.bcm.edu hg19 7 34192707 34192707 + Missense_Mutation SNP C C T rs143727756 TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . BMPER NM_133468 exon16 c.C1880T p.T627I CAGCCACCCAGTG . 97.0 37.0 84.0 0.0 . 131 . C|1.000;T|0.000 Atlas-SNP AMPH 273 hgsc.bcm.edu hg19 7 38670937 38670937 + Missense_Mutation SNP C C A novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . AMPH NM_139316 exon1 c.G15T p.K5N GCCCGTCTTGATG . 46.0 17.0 30.0 0.0 . 157 . . Atlas-SNP CDK13 8621 hgsc.bcm.edu hg19 7 40027408 40027408 + Silent SNP A A C novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . CDK13 NM_003718 exon2 c.A1422C p.A474A AGCTGCAGAAGCA . 99.0 40.0 105.0 0.0 . 114 . . Atlas-SNP CAMK2B 816 hgsc.bcm.edu hg19 7 44281927 44281927 + Nonsense_Mutation SNP C C A novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 CAMK2B,right_upper_lobe,carcinoma,0,1 CAMK2B NM_172081 exon10 c.G709T p.E237X CCCACTCAGGGGA . 67.0 28.0 75.0 0.0 . 56 . . Atlas-SNP DDC 1644 hgsc.bcm.edu hg19 7 50595913 50595913 + Missense_Mutation SNP A A T novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . DDC NM_001082971 exon6 c.T636A p.D212E GTTGCCATCTGAG . 81.0 28.0 79.0 0.0 . 100 . . Atlas-SNP HIP1 3092 hgsc.bcm.edu hg19 7 75368213 75368213 + Missense_Mutation SNP T T G novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . HIP1 NM_005338 exon1 c.A26C p.K9T ACCTGCTTCATGG . 31.0 14.0 45.0 0.0 . 91 . . Atlas-SNP GIMAP1-GIMAP5 0 hgsc.bcm.edu hg19 7 150440117 150440117 + Missense_Mutation SNP T T C novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . . NM_001199577 exon6 c.T1502C p.F501S TTTTTTTCATTAT . 51.0 12.0 80.0 0.0 . . . . Atlas-SNP MLL3 58508 hgsc.bcm.edu hg19 7 151860694 151860694 + Missense_Mutation SNP T T G novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . MLL3 NM_170606 exon43 c.A9968C p.H3323P CTAGTATGGCCAG . 158.0 56.0 187.0 0.0 . 1564 . . Atlas-SNP DPP6 1804 hgsc.bcm.edu hg19 7 154593130 154593130 + Silent SNP A A T novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . DPP6 NM_130797 exon13 c.A1365T p.G455G CCAGGGAGGACGA . 70.0 15.0 55.0 0.0 . 383 . . Atlas-SNP EXTL3 2137 hgsc.bcm.edu hg19 8 28575255 28575255 + Missense_Mutation SNP C C T rs200494893 bycluster TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 EXTL3,caecum,carcinoma,0,1 EXTL3 NM_001440 exon3 c.C1679T p.A560V GCAAGGCGGCTGG . 35.0 16.0 78.0 0.0 . 83 . C|0.999;T|0.001 Atlas-SNP SULF1 23213 hgsc.bcm.edu hg19 8 70551048 70551048 + Nonsense_Mutation SNP C C T novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . SULF1 NM_001128205 exon21 c.C2506T p.Q836X AGCTGTCAAGGAT . 333.0 72.0 205.0 0.0 . 153 . . Atlas-SNP TERF1 7013 hgsc.bcm.edu hg19 8 73944310 73944310 + Silent SNP A A G novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . TERF1 NM_017489 exon8 c.A981G p.Q327Q GTTGCAACATGGA . 180.0 106.0 116.0 0.0 . 48 . . Atlas-SNP ARHGAP39 80728 hgsc.bcm.edu hg19 8 145780976 145780976 + Missense_Mutation SNP A A T novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . ARHGAP39 NM_025251 exon5 c.T564A p.D188E ACTGTAATCCCGG . 129.0 25.0 101.0 0.0 . 80 . . Atlas-SNP KCNV2 169522 hgsc.bcm.edu hg19 9 2718181 2718181 + Missense_Mutation SNP G G A rs140256288 TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . KCNV2 NM_133497 exon1 c.G442A p.E148K ACAGACGAATACT . 113.0 38.0 163.0 0.0 . 72 . G|1.000;A|0.000 Atlas-SNP CNTFR 1271 hgsc.bcm.edu hg19 9 34552230 34552230 + Silent SNP G G T novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . CNTFR NM_147164 exon9 c.C1047A p.P349P CAAGAAGGGTGCC . 23.0 10.0 32.0 0.0 . 46 . . Atlas-SNP TRPM6 140803 hgsc.bcm.edu hg19 9 77442785 77442785 + Silent SNP C C T novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . TRPM6 NM_017662 exon7 c.G750A p.L250L ATCAGACAGGATG . 85.0 28.0 111.0 0.0 . 377 . . Atlas-SNP GAPVD1 26130 hgsc.bcm.edu hg19 9 128064751 128064751 + Missense_Mutation SNP G G T novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . GAPVD1 NM_015635 exon3 c.G675T p.R225S TGAGAGGTTCTCT . 54.0 25.0 55.0 0.0 . 124 . . Atlas-SNP TET1 80312 hgsc.bcm.edu hg19 10 70333914 70333914 + Missense_Mutation SNP A A G novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . TET1 NM_030625 exon2 c.A1819G p.T607A GAATGCACTTACT . 37.0 14.0 44.0 0.0 . 255 . . Atlas-SNP HTRA1 5654 hgsc.bcm.edu hg19 10 124273831 124273831 + Missense_Mutation SNP G G A novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . HTRA1 NM_002775 exon9 c.G1399A p.E467K GGTAATGAAGATA . 110.0 28.0 114.0 0.0 . 40 . . Atlas-SNP MUC2 4583 hgsc.bcm.edu hg19 11 1093298 1093298 + Missense_Mutation SNP C C T novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . MUC2 NM_002457 exon30 c.C5117T p.T1706M CCACTACGGTGAC . 64.0 8.0 69.0 0.0 . 614 . . Atlas-SNP OR52B4 143496 hgsc.bcm.edu hg19 11 4388835 4388835 + Missense_Mutation SNP G G A rs200224336 TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . OR52B4 NM_001005161 exon1 c.C691T p.P231S GAGAAGGCATGTG . 73.0 31.0 91.0 0.0 . 56 . G|0.999;A|0.001 Atlas-SNP STK33 65975 hgsc.bcm.edu hg19 11 8457664 8457664 + Silent SNP A A G novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . STK33 NM_030906 exon11 c.T970C p.L324L TTGCCAAAAAGGG . 88.0 32.0 123.0 0.0 . 147 . . Atlas-SNP SBF2 81846 hgsc.bcm.edu hg19 11 9868632 9868632 + Splice_Site SNP T T C novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . SBF2 NM_030962 exon24 c.2807-2A>G . ACCCACTGTAAAT . 159.0 52.0 195.0 0.0 . 146 . . Atlas-SNP NRXN2 9379 hgsc.bcm.edu hg19 11 64375122 64375122 + Missense_Mutation SNP G G T novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 NRXN2_ENST00000301894,caecum,carcinoma,0,2 NRXN2 NM_015080 exon23 c.C4685A p.A1562E TTGCCCGCCGGCA . 32.0 2.0 32.0 0.0 . 247 . . Atlas-SNP AICDA 57379 hgsc.bcm.edu hg19 12 8759514 8759514 + Missense_Mutation SNP T T A novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . AICDA NM_020661 exon2 c.A103T p.R35W CACGCCTCTTCAC . 47.0 14.0 81.0 0.0 . 37 . . Atlas-SNP BIN2 51411 hgsc.bcm.edu hg19 12 51693401 51693401 + Missense_Mutation SNP T T A novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . BIN2 NM_016293 exon6 c.A506T p.K169M GCAGTCTTGGCCT . 40.0 13.0 58.0 0.0 . 58 . . Atlas-SNP TSPAN31 6302 hgsc.bcm.edu hg19 12 58140038 58140038 + Missense_Mutation SNP A A C novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . TSPAN31 NM_005981 exon3 c.A311C p.Q104P GCAAACAGGTAAG . 118.0 40.0 134.0 0.0 . 20 . . Atlas-SNP LRRIQ1 84125 hgsc.bcm.edu hg19 12 85450884 85450884 + Silent SNP G G A novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 LRRIQ1_ENST00000393217,NS,carcinoma,0,2 LRRIQ1 NM_001079910 exon8 c.G2313A p.V771V ACCTGTGAAATGC . 155.0 61.0 193.0 0.0 . 512 . . Atlas-SNP UHRF1BP1L 23074 hgsc.bcm.edu hg19 12 100452950 100452950 + Nonsense_Mutation SNP C C T novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . UHRF1BP1L NM_015054 exon14 c.G2105A p.W702X TCTATCCAAAATT . 135.0 46.0 135.0 0.0 . 144 . . Atlas-SNP TMEM132B 114795 hgsc.bcm.edu hg19 12 126068404 126068404 + Missense_Mutation SNP A A T novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . TMEM132B NM_052907 exon5 c.A1286T p.E429V ACACCGAGGTTTT . 45.0 15.0 43.0 0.0 . 207 . . Atlas-SNP NOC4L 79050 hgsc.bcm.edu hg19 12 132636050 132636050 + Silent SNP G G A rs375514217 TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . NOC4L NM_024078 exon12 c.G1095A p.V365V CCTGGTGGCCGCC . 23.0 11.0 26.0 0.0 . 31 . . Atlas-SNP NALCN 259232 hgsc.bcm.edu hg19 13 101735199 101735199 + Silent SNP T T G novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . NALCN NM_052867 exon33 c.A3726C p.A1242A CATTGTTGCCAAA . 73.0 32.0 66.0 0.0 . 431 . . Atlas-SNP CCDC168 643677 hgsc.bcm.edu hg19 13 103383301 103383301 + Missense_Mutation SNP C C G novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . . NM_001146197 exon4 c.G19746C p.K6582N GGGTTTCTTTCTC . 136.0 48.0 167.0 0.0 . . . . Atlas-SNP FAM179B 23116 hgsc.bcm.edu hg19 14 45521641 45521641 + Missense_Mutation SNP A A G novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . FAM179B NM_015091 exon14 c.A4157G p.Y1386C ACAGGTATTATGG . 53.0 17.0 75.0 0.0 . 115 . . Atlas-SNP PYGL 5836 hgsc.bcm.edu hg19 14 51390766 51390766 + Missense_Mutation SNP C C A novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 PYGL,NS,carcinoma,0,1 PYGL NM_002863 exon5 c.G581T p.R194L TCTGGGCGGGACT . 110.0 34.0 140.0 0.0 . 77 . . Atlas-SNP SRSF5 6430 hgsc.bcm.edu hg19 14 70237967 70237967 + Missense_Mutation SNP G G T novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 SRSF5_ENST00000553521,NS,carcinoma,0,1 SRSF5 NM_001039465 exon8 c.G608T p.R203L GTAGCCGATCCCG . 65.0 3.0 64.0 0.0 . 45 . . Atlas-SNP GALC 2581 hgsc.bcm.edu hg19 14 88411981 88411981 + Missense_Mutation SNP G G A rs200960659 bycluster TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . GALC NM_000153 exon14 c.C1586T p.T529M CGTAGCGTGAAGT . 139.0 46.0 139.0 0.0 . 48 . . Atlas-SNP RYR3 6263 hgsc.bcm.edu hg19 15 33872221 33872221 + Missense_Mutation SNP A A G novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . RYR3 NM_001243996 exon13 c.A1313G p.E438G TAGAAGAAGTCCT . 134.0 41.0 167.0 0.0 . 760 . . Atlas-SNP TMEM87A 25963 hgsc.bcm.edu hg19 15 42519078 42519078 + Silent SNP G G A novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . TMEM87A NM_015497 exon15 c.C1329T p.A443A CCAGATGGCATCG . 45.0 14.0 54.0 0.0 . 56 . . Atlas-SNP KIAA1199 57214 hgsc.bcm.edu hg19 15 81235392 81235392 + Missense_Mutation SNP T T G novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . KIAA1199 NM_018689 exon27 c.T3806G p.L1269R CCATTCTGCAAGG . 99.0 34.0 107.0 0.0 . 118 . . Atlas-SNP TICRR 90381 hgsc.bcm.edu hg19 15 90159653 90159653 + Missense_Mutation SNP A A T novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . . NM_152259 exon16 c.A2887T p.T963S CTGCTGACTAAGA . 56.0 20.0 94.0 0.0 . . . . Atlas-SNP MLST8 64223 hgsc.bcm.edu hg19 16 2256124 2256124 + Missense_Mutation SNP T T C novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . MLST8 NM_001199174 exon2 c.T38C p.V13A ACCCGGTCATCCT . 38.0 15.0 57.0 0.0 . 60 . . Atlas-SNP MYH1 4619 hgsc.bcm.edu hg19 17 10408576 10408576 + Missense_Mutation SNP A A G novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . MYH1 NM_005963 exon21 c.T2339C p.M780T TCTCGCATCTCCT . 121.0 39.0 116.0 0.0 . 403 . . Atlas-SNP FAM83G 644815 hgsc.bcm.edu hg19 17 18874756 18874756 + Silent SNP T T C novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . FAM83G NM_001039999 exon6 c.A2388G p.L796L GGCCTTTAGGTGC . 57.0 12.0 60.0 0.0 . 51 . . Atlas-SNP KRTAP1-5 83895 hgsc.bcm.edu hg19 17 39183121 39183121 + Missense_Mutation SNP C C A novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . KRTAP1-5 NM_031957 exon1 c.G287T p.G96V CCAATGCCACAGC . 56.0 21.0 52.0 0.0 . 33 . . Atlas-SNP KRTAP1-5 83895 hgsc.bcm.edu hg19 17 39183122 39183122 + Missense_Mutation SNP C C A novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . KRTAP1-5 NM_031957 exon1 c.G286T p.G96C CAATGCCACAGCC . 55.0 21.0 51.0 0.0 . 33 . . Atlas-SNP SOST 50964 hgsc.bcm.edu hg19 17 41832903 41832903 + Missense_Mutation SNP C C T novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . SOST NM_025237 exon2 c.G449A p.G150D TCACCACCGGGAC . 12.0 5.0 4.0 0.0 . 19 . . Atlas-SNP CRHR1 1394 hgsc.bcm.edu hg19 17 43911988 43911988 + Splice_Site SNP A A T novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . CRHR1 NM_001256299 exon15 c.583-2A>T . GCCCACAGGTCCG . 23.0 4.0 22.0 0.0 . 48 . . Atlas-SNP CA10 56934 hgsc.bcm.edu hg19 17 50235089 50235089 + Missense_Mutation SNP A A G novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . CA10 NM_001082534 exon2 c.T58C p.S20P TACCTGATATGCA . 78.0 32.0 109.0 0.0 . 84 . . Atlas-SNP AMZ2 51321 hgsc.bcm.edu hg19 17 66246521 66246521 + Nonsense_Mutation SNP G G T novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . AMZ2 NM_001033574 exon2 c.G193T p.E65X CACCCTGAGGCTC . 108.0 19.0 115.0 0.0 . 15 . . Atlas-SNP ASPSCR1 79058 hgsc.bcm.edu hg19 17 79974909 79974909 + Missense_Mutation SNP T T A novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . ASPSCR1 NM_001251888 exon16 c.T1850A p.V617D CGCTGGTCCCCCC . 33.0 14.0 54.0 0.0 . 27 . . Atlas-SNP POTEC 388468 hgsc.bcm.edu hg19 18 14511960 14511960 + Silent SNP G G A novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . POTEC NM_001137671 exon11 c.C1566T p.L522L ACGCAAGAGATCT . 608.0 183.0 756.0 0.0 . 129 . . Atlas-SNP LMAN1 3998 hgsc.bcm.edu hg19 18 57021788 57021788 + Missense_Mutation SNP T T A rs139797136 byfrequency;alternate_allele TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . LMAN1 NM_005570 exon4 c.A502T p.I168L TGCCTATAATTAC . 77.0 24.0 76.0 0.0 . 57 . T|1.000;C|0.000 Atlas-SNP ELANE 1991 hgsc.bcm.edu hg19 19 855988 855988 + Missense_Mutation SNP G G T rs140880838 bycluster;byfrequency;alternate_allele TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . ELANE NM_001972 exon5 c.G628T p.G210W TGCAACGGGCTAA . 67.0 4.0 62.0 0.0 . 27 . G|1.000;A|0.000 Atlas-SNP MLLT1 4298 hgsc.bcm.edu hg19 19 6226990 6226990 + Nonsense_Mutation SNP T T A novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . MLLT1 NM_005934 exon5 c.A544T p.K182X TAACCTTGGAGCC . 110.0 28.0 132.0 0.0 . 47 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9072822 9072822 + Nonsense_Mutation SNP G G T novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . MUC16 NM_024690 exon3 c.C14624A p.S4875X GGTATTGATCTGG . 267.0 93.0 295.0 0.0 . 4315 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9085379 9085379 + Missense_Mutation SNP G G A novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 MUC16_ENST00000397910,NS,carcinoma,0,2 MUC16 NM_024690 exon1 c.C6436T p.L2146F TTGGAAGAGGGAC . 83.0 29.0 93.0 0.0 . 4315 . . Atlas-SNP NOTCH3 4854 hgsc.bcm.edu hg19 19 15280956 15280956 + Missense_Mutation SNP T T A novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . NOTCH3 NM_000435 exon28 c.A5140T p.M1714L CCCCCATCAGGCT . 72.0 29.0 95.0 0.0 . 340 . . Atlas-SNP KIAA1683 80726 hgsc.bcm.edu hg19 19 18375495 18375495 + Missense_Mutation SNP C C A novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . KIAA1683 NM_001145304 exon3 c.G2855T p.R952L AGGGCTCGGGACA . 58.0 16.0 49.0 0.0 . 190 . . Atlas-SNP HAPLN4 404037 hgsc.bcm.edu hg19 19 19369444 19369444 + Silent SNP C C T novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 HAPLN4,NS,malignant_melanoma,-1,1 HAPLN4 NM_023002 exon4 c.G705A p.G235G CCCGGTCCCCCCC . 48.0 21.0 42.0 0.0 . 44 . . Atlas-SNP ZNF737 100129842 hgsc.bcm.edu hg19 19 20736517 20736517 + Missense_Mutation SNP A A G novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . ZNF737 NM_001159293 exon2 c.T128C p.L43P TCACCAAGGAAGA . 399.0 162.0 442.0 0.0 . 50 . . Atlas-SNP ZNF536 9745 hgsc.bcm.edu hg19 19 30935240 30935240 + Silent SNP G G A novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . ZNF536 NM_014717 exon2 c.G771A p.S257S GCCCTCGCCCAAG . 11.0 5.0 7.0 0.0 . 424 . . Atlas-SNP SIGLEC9 27180 hgsc.bcm.edu hg19 19 51633221 51633221 + Missense_Mutation SNP T T C rs377533277 alternate_allele TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . SIGLEC9 NM_014441 exon7 c.T1277C p.V426A CCTCAGTGGGGGA . 138.0 29.0 76.0 0.0 . 85 . . Atlas-SNP ZNF845 91664 hgsc.bcm.edu hg19 19 53854549 53854549 + Missense_Mutation SNP A A T novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . ZNF845 NM_138374 exon4 c.A621T p.E207D GCAGGAAGTACAC . 194.0 35.0 172.0 0.0 . 101 . . Atlas-SNP ZNF845 91664 hgsc.bcm.edu hg19 19 53856524 53856524 + Nonsense_Mutation SNP A A T novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . ZNF845 NM_138374 exon4 c.A2596T p.K866X TGTGGCAAGGTTT . 173.0 37.0 86.0 0.0 . 101 . . Atlas-SNP KIR2DL3 3804 hgsc.bcm.edu hg19 19 55263136 55263136 + Missense_Mutation SNP T T A novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . KIR2DL3 NM_015868 exon6 c.T751A p.S251T GGGACCTCAGTGG . 14.0 7.0 22.0 0.0 . 68 . . Atlas-SNP ZNF417 147687 hgsc.bcm.edu hg19 19 58419943 58419943 + Missense_Mutation SNP C C T novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . ZNF417 NM_152475 exon3 c.G1703A p.S568N TGTGAACTCTGAT . 346.0 67.0 185.0 0.0 . 44 . . Atlas-SNP ZBP1 81030 hgsc.bcm.edu hg19 20 56179629 56179629 + Silent SNP C C T novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . ZBP1 NM_030776 exon8 c.G1290A p.X430X TGTGCACTAAATC . 50.0 12.0 50.0 0.0 . 65 . . Atlas-SNP PPDPF 79144 hgsc.bcm.edu hg19 20 62153144 62153144 + Missense_Mutation SNP G G A novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . PPDPF NM_024299 exon4 c.G257A p.S86N CCAGCAGCATGAC . 52.0 21.0 51.0 0.0 . 6 . . Atlas-SNP TPTE 7179 hgsc.bcm.edu hg19 21 10942966 10942966 + Missense_Mutation SNP A A T novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . TPTE NM_199261 exon12 c.T621A p.H207Q AAACAGATGAAAA . 572.0 99.0 695.0 0.0 . 513 . . Atlas-SNP SHANK3 85358 hgsc.bcm.edu hg19 22 51113571 51113571 + Silent SNP T T C novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . SHANK3 NM_033517 exon2 c.T159C p.Y53Y CAACTATGGGCTT . 32.0 24.0 29.0 0.0 . 96 . . Atlas-SNP SSX1 6756 hgsc.bcm.edu hg19 X 48125757 48125757 + Missense_Mutation SNP C C A novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . SSX1 NM_005635 exon7 c.C502A p.L168M CACAGACTGCGTG . 216.0 170.0 238.0 0.0 . 27 . . Atlas-SNP ZXDA 7789 hgsc.bcm.edu hg19 X 57936473 57936473 + Missense_Mutation SNP T T G novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . ZXDA NM_007156 exon1 c.A382C p.S128R CGCCGCTCTCGTC . 9.0 8.0 8.0 0.0 . 70 . . Atlas-SNP NAP1L2 4674 hgsc.bcm.edu hg19 X 72434298 72434298 + Missense_Mutation SNP A A G novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . NAP1L2 NM_021963 exon1 c.T31C p.S11P ATTCTGACAGCTC . 119.0 86.0 135.0 0.0 . 77 . . Atlas-SNP KLHL4 56062 hgsc.bcm.edu hg19 X 86877345 86877345 + Silent SNP G G T novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . KLHL4 NM_019117 exon5 c.G1059T p.V353V GTGGGTGGGGCAT . 122.0 83.0 173.0 1.0 . 263 . . Atlas-SNP IL9R 3581 hgsc.bcm.edu hg19 X 155233487 155233487 + Silent SNP C C T novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . IL9R NM_176786 exon5 c.C534T p.A178A GTCAGCCTGGTGG . 121.0 38.0 113.0 0.0 . 73 . . Atlas-SNP CDRT1 374286 hgsc.bcm.edu hg19 17 15508540 15508541 + Frame_Shift_Del DEL AT AT - novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 AT AT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . CDRT1 NM_006382 exon7 c.1430_1431del p.477_477del . . 347.0 140.0 378.0 0.0 . 83 . . Atlas-Indel,Pindel ALPPL2 251 hgsc.bcm.edu hg19 2 233274441 233274441 + Frame_Shift_Del DEL C C - novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . ALPPL2 NM_031313 exon11 c.1457delG p.C486fs . . 41.0 15.0 28.0 0.0 . 36 . . Atlas-INDEL TRPC6 7225 hgsc.bcm.edu hg19 11 101375213 101375213 + Frame_Shift_Del DEL C C - novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . TRPC6 NM_004621 exon2 c.488delA p.D163fs . . 69.0 21.0 67.0 0.0 . 132 . . Atlas-Indel,Pindel BBS12 166379 hgsc.bcm.edu hg19 4 123664403 123664404 + Frame_Shift_Ins INS - - CAGG novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . BBS12 NM_001178007 exon3 c.1356_1357insCAGG p.V452fs . . 85.0 24.0 119.0 0.0 . 63 . . Atlas-Indel,Pindel KCNA1 3736 hgsc.bcm.edu hg19 12 5020766 5020766 + Frame_Shift_Del DEL C C - novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . KCNA1 NM_000217 exon2 c.221delA p.D74fs . . 64.0 22.0 61.0 0.0 . 112 . . Atlas-Indel,Pindel SAAL1 113174 hgsc.bcm.edu hg19 11 18105155 18105155 + Frame_Shift_Del DEL T T - novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . SAAL1 NM_138421 exon10 c.1167delT p.D389fs . . 199.0 66.0 193.0 0.0 . 34 . . Atlas-Indel,Pindel SEL1L 6400 hgsc.bcm.edu hg19 14 81965951 81965953 + Splice_Site DEL ACC ACC - novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 ACC ACC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . SEL1L . . . . . . 149.0 30.0 209.0 0.0 . 67 . . Atlas-INDEL NLRP1 22861 hgsc.bcm.edu hg19 17 5462324 5462325 + Frame_Shift_Ins INS - - A novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . NLRP1 NM_014922 exon4 c.1692_1693insT p.L564fs . . 109.0 39.0 137.0 0.0 . 358 . . Atlas-Indel,Pindel SEL1L 6400 hgsc.bcm.edu hg19 14 81965951 81965962 + Splice_Site DEL AATAGTATTACC AATAGTATTACC - novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 AATAGTATTACC AATAGTATTACC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . SEL1L . . . . . . 163.0 21.0 214.0 0.0 . 67 . . Pindel TENM4 26011 hgsc.bcm.edu hg19 11 78413217 78413217 + Frame_Shift_Del DEL G G - novel TCGA-MI-A75H-01A-11D-A32G-10 TCGA-MI-A75H-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf 9804bf31-f0fd-4531-bca1-3ac172fc2b29 . . NM_001098816 exon28 c.4442delT p.L1481fs . . 83.0 21.0 79.0 0.0 . . . . Pindel