Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
RCAN3	11123	hgsc.bcm.edu	hg19	1	24859572	24859572	+	Splice_Site	SNP	G	G	A	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	RCAN3	NM_001251979	exon4	c.370-1G>A	.	CCTGCAGGTGCAG	.	73.0	28.0	60.0	0.0	.	22	.	.	Atlas-SNP
C1orf87	127795	hgsc.bcm.edu	hg19	1	60521079	60521079	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	C1orf87	NM_152377	exon3	c.C139T	p.Q47X	TTGTTTGGGTTTC	.	126.0	37.0	135.0	0.0	.	55	.	.	Atlas-SNP
JAK1	3716	hgsc.bcm.edu	hg19	1	65305399	65305399	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	JAK1,NS,carcinoma,0,2	JAK1	NM_002227	exon20	c.T2729C	p.L910P	GGCTTCAGAGATT	.	112.0	25.0	116.0	0.0	.	209	.	.	Atlas-SNP
MCOLN3	55283	hgsc.bcm.edu	hg19	1	85510937	85510937	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	MCOLN3	NM_001253693	exon2	c.A107G	p.D36G	ATCTGGTCTTCTA	.	83.0	27.0	88.0	0.0	.	74	.	.	Atlas-SNP
CDC7	8317	hgsc.bcm.edu	hg19	1	91985781	91985781	+	Silent	SNP	C	C	T	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	CDC7	NM_001134419	exon11	c.C1275T	p.A425A	TTTGGCCCAAATT	.	157.0	30.0	193.0	0.0	.	74	.	.	Atlas-SNP
LCE2D	353141	hgsc.bcm.edu	hg19	1	152636736	152636736	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	LCE2D	NM_178430	exon2	c.C155G	p.S52C	CCAGCTCTGGGAG	.	166.0	43.0	191.0	0.0	.	26	.	.	Atlas-SNP
S100A5	6276	hgsc.bcm.edu	hg19	1	153509857	153509857	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	S100A5	NM_002962	exon4	c.A194G	p.Q65R	ATCTCCTGGTCGC	.	123.0	28.0	154.0	0.0	.	10	.	.	Atlas-SNP
TNN	63923	hgsc.bcm.edu	hg19	1	175046704	175046704	+	Silent	SNP	G	G	A	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	TNN	NM_022093	exon2	c.G150A	p.V50V	CGATGTGCCCAAG	.	131.0	29.0	168.0	0.0	.	297	.	.	Atlas-SNP
PTPRC	5788	hgsc.bcm.edu	hg19	1	198725152	198725152	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	PTPRC	NM_002838	exon33	c.G3763T	p.V1255L	GACAAAGTAAAGC	.	340.0	99.0	374.0	0.0	.	229	.	.	Atlas-SNP
IL24	11009	hgsc.bcm.edu	hg19	1	207073658	207073658	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	IL24	NM_001185156	exon4	c.A262T	p.T88S	AACATCACGAGTG	.	73.0	19.0	76.0	0.0	.	20	.	.	Atlas-SNP
ACTN2	88	hgsc.bcm.edu	hg19	1	236900515	236900515	+	Splice_Site	SNP	G	G	T	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	ACTN2	NM_001103	exon9	c.876+1G>T	.	AGTGAGGTAAAGG	.	110.0	38.0	135.0	0.0	.	191	.	.	Atlas-SNP
OR13G1	441933	hgsc.bcm.edu	hg19	1	247835685	247835685	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	OR13G1	NM_001005487	exon1	c.T659C	p.V220A	ATAGCAACAATGA	.	131.0	32.0	155.0	0.0	.	78	.	.	Atlas-SNP
MCEE	84693	hgsc.bcm.edu	hg19	2	71351621	71351621	+	Silent	SNP	T	T	C	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	MCEE	NM_032601	exon2	c.A93G	p.T31T	CTGTGATGTGGAA	.	80.0	14.0	94.0	0.0	.	19	.	.	Atlas-SNP
CLASP1	23332	hgsc.bcm.edu	hg19	2	122165165	122165165	+	Silent	SNP	G	G	A	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	CLASP1	NM_015282	exon25	c.C2551T	p.L851L	GCCGCAGATAATG	.	183.0	42.0	209.0	0.0	.	135	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179595433	179595433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	TTN	NM_001267550	exon61	c.G17827A	p.A5943T	ACCCAGCCACTAT	.	169.0	7.0	183.0	0.0	.	18412	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179634550	179634550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	TTN_ENST00000360870,face,carcinoma,0,4	TTN	NM_001267550	exon37	c.G8758A	p.E2920K	CAATTTCCACACC	.	152.0	36.0	180.0	0.0	.	18412	.	.	Atlas-SNP
OSGEPL1	64172	hgsc.bcm.edu	hg19	2	190617705	190617705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	OSGEPL1	NM_022353	exon6	c.G964T	p.V322F	ATGCAACCTGAAG	.	278.0	73.0	342.0	0.0	.	19	.	.	Atlas-SNP
CYP20A1	57404	hgsc.bcm.edu	hg19	2	204150447	204150447	+	Silent	SNP	G	G	A	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	CYP20A1	NM_177538	exon9	c.G963A	p.E321E	AATTGAGCAGCTC	.	594.0	140.0	661.0	1.0	.	40	.	.	Atlas-SNP
MAP2	4133	hgsc.bcm.edu	hg19	2	210558225	210558225	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	MAP2	NM_002374	exon7	c.T1331C	p.L444P	TGAAGCTTGAAGA	.	185.0	55.0	190.0	0.0	.	372	.	.	Atlas-SNP
ZNF142	7701	hgsc.bcm.edu	hg19	2	219513983	219513983	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	ZNF142	NM_001105537	exon6	c.A648C	p.E216D	GGCCTTTTCACCC	.	82.0	20.0	104.0	0.0	.	190	.	.	Atlas-SNP
OBSL1	23363	hgsc.bcm.edu	hg19	2	220426656	220426656	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	OBSL1	NM_001173408	exon9	c.C3028G	p.R1010G	AGAGCCGCCGGGT	.	109.0	5.0	164.0	0.0	.	120	.	.	Atlas-SNP
COL4A4	1286	hgsc.bcm.edu	hg19	2	227942713	227942713	+	Silent	SNP	C	C	T	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	COL4A4	NM_000092	exon25	c.G1884A	p.G628G	TGGGGGCCCCACA	.	172.0	57.0	185.0	0.0	.	215	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266137	41266137	+	Missense_Mutation	SNP	C	C	T	rs121913409	bycluster	TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	CTNNB1,NS,carcinoma,+1,2	CTNNB1	NM_001098209	exon3	c.C134T	p.S45F	CTCCTTCTCTGAG	.	152.0	49.0	171.0	0.0	.	4904	.	.	Atlas-SNP
LIMD1	8994	hgsc.bcm.edu	hg19	3	45636572	45636572	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	LIMD1	NM_014240	exon1	c.G201T	p.E67D	GCAGGAGGAGACT	.	80.0	4.0	91.0	0.0	.	34	.	.	Atlas-SNP
PLCXD2	257068	hgsc.bcm.edu	hg19	3	111394161	111394161	+	Silent	SNP	G	G	A	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	PLCXD2	NM_001185106	exon1	c.G69A	p.G23G	CAGCGGGACAAAG	.	184.0	40.0	181.0	0.0	.	36	.	.	Atlas-SNP
PLXNA1	5361	hgsc.bcm.edu	hg19	3	126726697	126726697	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	PLXNA1,NS,carcinoma,0,1	PLXNA1	NM_032242	exon8	c.G2053A	p.V685M	CGCCACGTGTGCA	.	71.0	12.0	71.0	0.0	.	185	.	.	Atlas-SNP
ALB	213	hgsc.bcm.edu	hg19	4	74282072	74282072	+	Splice_Site	SNP	T	T	G	rs77232890	bycluster;alternate_allele	TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	ALB	NM_000477	exon10	c.1289+2T>G	.	AATGCGTAAGTAA	.	200.0	58.0	224.0	0.0	.	132	.	.	Atlas-SNP
ARHGAP10	79658	hgsc.bcm.edu	hg19	4	148796299	148796299	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	ARHGAP10	NM_024605	exon8	c.A830G	p.K277R	AGGAAAAAAGTAA	.	558.0	162.0	698.0	0.0	.	92	.	.	Atlas-SNP
FBXO8	26269	hgsc.bcm.edu	hg19	4	175183929	175183929	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	FBXO8	NM_012180	exon2	c.A315C	p.E105D	GAGAAGTTCATCA	.	156.0	35.0	161.0	0.0	.	34	.	.	Atlas-SNP
ACTBL2	345651	hgsc.bcm.edu	hg19	5	56777436	56777436	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	ACTBL2	NM_001017992	exon1	c.G1099A	p.G367S	GAGGACCAGCCTC	.	92.0	19.0	139.0	0.0	.	65	.	.	Atlas-SNP
PDE4D	5144	hgsc.bcm.edu	hg19	5	59284493	59284493	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	PDE4D	NM_001165899	exon3	c.G94A	p.G32R	CCATTCCGCGGAA	.	1507.0	439.0	1888.0	1.0	.	345	.	.	Atlas-SNP
PCDHGB3	56102	hgsc.bcm.edu	hg19	5	140751548	140751548	+	Silent	SNP	G	G	A	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	PCDHGB3	NM_018924	exon1	c.G1587A	p.E529E	CTTCGAGCTCACT	.	90.0	25.0	110.0	0.0	.	168	.	.	Atlas-SNP
DUSP1	1843	hgsc.bcm.edu	hg19	5	172196041	172196041	+	Silent	SNP	A	A	G	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	DUSP1	NM_004417	exon4	c.T828C	p.T276T	TCGATTAGTCCTC	.	93.0	8.0	89.0	0.0	.	27	.	.	Atlas-SNP
PXDC1	221749	hgsc.bcm.edu	hg19	6	3751735	3751735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	.	NM_183373	exon1	c.C31T	p.L11F	TCACGAGCGACGT	.	106.0	30.0	154.0	0.0	.	.	.	.	Atlas-SNP
COL12A1	1303	hgsc.bcm.edu	hg19	6	75902065	75902065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	COL12A1	NM_004370	exon4	c.C197T	p.P66L	TTAGTAGGCCCAT	.	85.0	20.0	111.0	0.0	.	385	.	.	Atlas-SNP
FAM46A	55603	hgsc.bcm.edu	hg19	6	82459733	82459733	+	Silent	SNP	C	C	T	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	FAM46A	NM_017633	exon3	c.G1008A	p.L336L	GGACTCCAGTTTT	.	114.0	32.0	147.0	0.0	.	37	.	.	Atlas-SNP
ZNF292	23036	hgsc.bcm.edu	hg19	6	87943233	87943233	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	ZNF292	NM_015021	exon5	c.G729T	p.K243N	TGGAAAGTTAATC	.	175.0	39.0	199.0	0.0	.	479	.	.	Atlas-SNP
PNISR	25957	hgsc.bcm.edu	hg19	6	99849338	99849338	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	PNISR	NM_015491	exon11	c.A1496G	p.H499R	TCTTTATGCTCTT	.	90.0	21.0	99.0	0.0	.	74	.	.	Atlas-SNP
TNFAIP3	7128	hgsc.bcm.edu	hg19	6	138202372	138202372	+	Silent	SNP	G	G	T	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	TNFAIP3	NM_001270507	exon9	c.G2289T	p.R763R	TTGCCGGGCCCCC	.	143.0	40.0	166.0	0.0	.	340	.	.	Atlas-SNP
REPS1	85021	hgsc.bcm.edu	hg19	6	139238740	139238740	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	REPS1	NM_031922	exon13	c.C1550G	p.S517C	GTAAAAGAGTCTG	.	77.0	19.0	76.0	0.0	.	58	.	.	Atlas-SNP
SCIN	85477	hgsc.bcm.edu	hg19	7	12617696	12617696	+	Silent	SNP	G	G	A	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	SCIN	NM_001112706	exon2	c.G207A	p.E69E	AAAGGAGTGTTCC	.	96.0	24.0	106.0	0.0	.	105	.	.	Atlas-SNP
PLXNA4	91584	hgsc.bcm.edu	hg19	7	131883359	131883359	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	PLXNA4	NM_020911	exon13	c.A2623G	p.K875E	TGACCTTGGTGCC	.	68.0	18.0	73.0	0.0	.	873	.	.	Atlas-SNP
GALNTL5	168391	hgsc.bcm.edu	hg19	7	151704964	151704964	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	GALNTL5,colon,carcinoma,0,1	GALNTL5	NM_145292	exon7	c.G961T	p.E321X	TTTAATGAAATTG	.	191.0	51.0	248.0	0.0	.	87	.	.	Atlas-SNP
MLL3	58508	hgsc.bcm.edu	hg19	7	151944994	151944994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	MLL3	NM_170606	exon14	c.C2525A	p.S842Y	TGTTTGGACCGAG	.	299.0	21.0	332.0	0.0	.	1564	.	.	Atlas-SNP
TTI2	80185	hgsc.bcm.edu	hg19	8	33360968	33360968	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	.	NM_001265581	exon6	c.T1238G	p.L413R	TGCATGAGAAGTT	.	77.0	31.0	130.0	0.0	.	.	.	.	Atlas-SNP
MTFR1	9650	hgsc.bcm.edu	hg19	8	66617100	66617100	+	Silent	SNP	T	T	G	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	MTFR1	NM_014637	exon5	c.T453G	p.L151L	TGAACTTGCTGCT	.	339.0	200.0	213.0	0.0	.	26	.	.	Atlas-SNP
PRDM14	63978	hgsc.bcm.edu	hg19	8	70981937	70981937	+	Silent	SNP	G	G	A	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	PRDM14	NM_024504	exon2	c.C159T	p.F53F	CTGCCGGAAAGGT	.	135.0	22.0	84.0	0.0	.	102	.	.	Atlas-SNP
VPS13B	157680	hgsc.bcm.edu	hg19	8	100147862	100147862	+	Silent	SNP	G	G	T	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	VPS13B_ENST00000357162,NS,carcinoma,0,2	VPS13B	NM_152564	exon11	c.G1464T	p.T488T	GAGTACGAAAGGT	.	227.0	142.0	149.0	1.0	.	811	.	.	Atlas-SNP
RSPO2	340419	hgsc.bcm.edu	hg19	8	108970401	108970401	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	RSPO2	NM_178565	exon5	c.C523T	p.Q175X	CAATTTGCCGTGT	.	230.0	118.0	183.0	0.0	.	65	.	.	Atlas-SNP
ATAD2	29028	hgsc.bcm.edu	hg19	8	124373808	124373808	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	ATAD2	NM_014109	exon9	c.G1128C	p.R376S	CCTTTTCCTCCGC	.	130.0	6.0	87.0	0.0	.	160	.	.	Atlas-SNP
TLN1	7094	hgsc.bcm.edu	hg19	9	35707195	35707195	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	TLN1	NM_006289	exon37	c.C4829A	p.A1610D	CCCCCGGCACTCT	.	45.0	9.0	53.0	0.0	.	185	.	.	Atlas-SNP
LMX1B	4010	hgsc.bcm.edu	hg19	9	129376817	129376817	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	LMX1B	NM_001174146	exon1	c.T89C	p.M30T	TCAAGATGGAGGA	.	83.0	20.0	111.0	0.0	.	86	.	.	Atlas-SNP
IDI1	3422	hgsc.bcm.edu	hg19	10	1094891	1094891	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	IDI1	NM_004508	exon1	c.G53T	p.R18L	TGGCCCCGCCCCC	.	74.0	20.0	111.0	0.0	.	22	.	.	Atlas-SNP
IL2RA	3559	hgsc.bcm.edu	hg19	10	6061870	6061870	+	Silent	SNP	A	A	G	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	IL2RA	NM_000417	exon5	c.T618C	p.R206R	CTCAGGACGGCCT	.	65.0	16.0	60.0	0.0	.	37	.	.	Atlas-SNP
KAT6B	23522	hgsc.bcm.edu	hg19	10	76789928	76789928	+	Silent	SNP	T	T	A	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	.	NM_012330	exon18	c.T5346A	p.A1782A	GCTGGCTGAAATC	.	63.0	25.0	74.0	0.0	.	.	.	.	Atlas-SNP
CDHR1	92211	hgsc.bcm.edu	hg19	10	85970828	85970828	+	Silent	SNP	C	C	T	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	CDHR1	NM_001171971	exon13	c.C1392T	p.D464D	CCTGGACACCAAT	.	132.0	33.0	155.0	0.0	.	122	.	.	Atlas-SNP
SLIT1	6585	hgsc.bcm.edu	hg19	10	98766260	98766260	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	SLIT1,colon,carcinoma,0,1	SLIT1	NM_003061	exon32	c.C3559T	p.R1187W	TGGCCCGTGGCCA	.	135.0	6.0	193.0	0.0	.	154	.	.	Atlas-SNP
OR51A7	119687	hgsc.bcm.edu	hg19	11	4929013	4929013	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	OR51A7	NM_001004749	exon1	c.C414A	p.S138R	CACTAGCAACAGG	.	90.0	31.0	80.0	0.0	.	86	.	.	Atlas-SNP
CKAP5	9793	hgsc.bcm.edu	hg19	11	46817191	46817191	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	CKAP5	NM_001008938	exon13	c.A1603G	p.I535V	CAGAAATGTCCTT	.	112.0	30.0	151.0	0.0	.	134	.	.	Atlas-SNP
OR8H2	390151	hgsc.bcm.edu	hg19	11	55872871	55872871	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	OR8H2	NM_001005200	exon1	c.T353A	p.M118K	CCTCAATGGCCCA	.	111.0	31.0	97.0	0.0	.	117	.	.	Atlas-SNP
TIGD3	220359	hgsc.bcm.edu	hg19	11	65124368	65124368	+	Silent	SNP	A	A	G	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	TIGD3	NM_145719	exon2	c.A1089G	p.E363E	TCAAGAAGGGCTG	.	93.0	6.0	127.0	0.0	.	32	.	.	Atlas-SNP
KIAA1731	85459	hgsc.bcm.edu	hg19	11	93461979	93461979	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	KIAA1731	NM_033395	exon25	c.T7294G	p.F2432V	AAATGCTTCTTTC	.	52.0	18.0	70.0	0.0	.	173	.	.	Atlas-SNP
CEP57	9702	hgsc.bcm.edu	hg19	11	95564320	95564320	+	Missense_Mutation	SNP	T	T	G	rs146538238	alternate_allele	TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	CEP57	NM_014679	exon11	c.T1403G	p.L468R	TGAAACTGAGACC	.	404.0	110.0	507.0	1.0	.	40	.	T|1.000;A|0.000	Atlas-SNP
NPAT	4863	hgsc.bcm.edu	hg19	11	108047094	108047094	+	Silent	SNP	T	T	A	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	NPAT	NM_002519	exon12	c.A1011T	p.T337T	ATTCTTTGTTTTG	.	57.0	14.0	65.0	0.0	.	124	.	.	Atlas-SNP
CCDC84	338657	hgsc.bcm.edu	hg19	11	118868995	118868995	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	CCDC84	NM_198489	exon1	c.C88G	p.L30V	CGGCAGCTGAAGG	.	148.0	48.0	178.0	0.0	.	21	.	.	Atlas-SNP
C2CD2L	9854	hgsc.bcm.edu	hg19	11	118978593	118978593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	C2CD2L	NM_014807	exon1	c.C142T	p.P48S	CGGGGCCCGGGAC	.	57.0	9.0	93.0	0.0	.	39	.	.	Atlas-SNP
SORL1	6653	hgsc.bcm.edu	hg19	11	121492888	121492888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	SORL1	NM_003105	exon45	c.G6082A	p.D2028N	GCACCTGATGCCT	.	88.0	18.0	82.0	0.0	.	218	.	.	Atlas-SNP
C2CD5	9847	hgsc.bcm.edu	hg19	12	22677545	22677545	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	.	NM_014802	exon6	c.A462C	p.K154N	ATAGCATTTTGGA	.	96.0	32.0	105.0	0.0	.	.	.	.	Atlas-SNP
ERBB3	2065	hgsc.bcm.edu	hg19	12	56474108	56474108	+	Silent	SNP	G	G	A	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	ERBB3	NM_001982	exon1	c.G24A	p.Q8Q	TCTGCAGGTGCTG	.	136.0	54.0	138.0	0.0	.	350	.	.	Atlas-SNP
IL31	386653	hgsc.bcm.edu	hg19	12	122657230	122657230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	IL31	NM_001014336	exon3	c.C224T	p.P75L	GCGTCAGGGCTGA	.	130.0	40.0	154.0	0.0	.	23	.	.	Atlas-SNP
UBC	7316	hgsc.bcm.edu	hg19	12	125397157	125397157	+	Silent	SNP	G	G	A	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	UBC	NM_021009	exon2	c.C1161T	p.T387T	AGTCAGGGTCTTC	.	267.0	63.0	353.0	0.0	.	79	.	.	Atlas-SNP
DGKH	160851	hgsc.bcm.edu	hg19	13	42733407	42733407	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	DGKH	NM_001204504	exon7	c.A628G	p.K210E	GTGTGTAAATTCA	.	39.0	12.0	68.0	0.0	.	106	.	.	Atlas-SNP
OR10G2	26534	hgsc.bcm.edu	hg19	14	22102423	22102423	+	Silent	SNP	C	C	T	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	OR10G2	NM_001005466	exon1	c.G576A	p.L192L	ACAGGCCAGTCTC	.	275.0	73.0	314.0	0.0	.	35	.	.	Atlas-SNP
DHRS1	115817	hgsc.bcm.edu	hg19	14	24760356	24760356	+	Missense_Mutation	SNP	C	C	G	rs148282342	alternate_allele	TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	DHRS1	NM_138452	exon8	c.G794C	p.R265P	ACATCCCGAAGGC	.	91.0	34.0	94.0	0.0	.	21	.	C|1.000;T|0.000	Atlas-SNP
SEL1L	6400	hgsc.bcm.edu	hg19	14	81943498	81943498	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	SEL1L	NM_005065	exon21	c.A2203G	p.M735V	GGTCCATATCAAG	.	134.0	41.0	136.0	0.0	.	67	.	.	Atlas-SNP
GABRG3	2567	hgsc.bcm.edu	hg19	15	27778000	27778000	+	Silent	SNP	C	C	A	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	GABRG3	NM_033223	exon10	c.C1377A	p.V459V	CCTGGTCTACTGG	.	92.0	31.0	108.0	0.0	.	115	.	.	Atlas-SNP
CA12	771	hgsc.bcm.edu	hg19	15	63632640	63632640	+	Silent	SNP	C	C	T	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	CA12	NM_206925	exon7	c.G594A	p.Q198Q	TGCTTCCTGGCCT	.	122.0	33.0	135.0	0.0	.	33	.	.	Atlas-SNP
LOXL1	4016	hgsc.bcm.edu	hg19	15	74219803	74219803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	LOXL1	NM_005576	exon1	c.C679T	p.P227S	ATCTACCCCTACC	.	79.0	14.0	109.0	0.0	.	25	.	.	Atlas-SNP
ULK3	25989	hgsc.bcm.edu	hg19	15	75130667	75130667	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	ULK3	NM_001099436	exon12	c.G1186T	p.E396X	CCTGCTCCCCGCC	.	142.0	36.0	208.0	0.0	.	30	.	.	Atlas-SNP
TMEM8A	58986	hgsc.bcm.edu	hg19	16	422023	422023	+	Silent	SNP	G	G	A	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	TMEM8A	NM_021259	exon13	c.C2280T	p.C760C	GTTCTTGCAGATC	.	49.0	12.0	93.0	0.0	.	49	.	.	Atlas-SNP
TMEM8A	58986	hgsc.bcm.edu	hg19	16	422038	422038	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	TMEM8A	NM_021259	exon13	c.C2265A	p.C755X	ATAGTGGCAGGGG	.	49.0	14.0	87.0	0.0	.	49	.	.	Atlas-SNP
COQ7	10229	hgsc.bcm.edu	hg19	16	19083318	19083318	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	COQ7	NM_016138	exon2	c.G142A	p.A48T	CGGGCAGCTGTGG	.	141.0	33.0	227.0	0.0	.	16	.	.	Atlas-SNP
SRCAP	10847	hgsc.bcm.edu	hg19	16	30745076	30745076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	SRCAP	NM_006662	exon29	c.C6451T	p.R2151C	CAGGACCGCTGTC	.	99.0	30.0	125.0	0.0	.	298	.	.	Atlas-SNP
ITGAE	3682	hgsc.bcm.edu	hg19	17	3664397	3664397	+	Missense_Mutation	SNP	C	C	T	rs184355144	by1000genomes;alternate_allele	TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	ITGAE	NM_002208	exon6	c.G508A	p.D170N	TCACATCGTCTTC	.	30.0	12.0	54.0	0.0	.	96	.	C|1.000;G|0.000	Atlas-SNP
KCNJ16	3773	hgsc.bcm.edu	hg19	17	68129150	68129150	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	KCNJ16	NM_001270422	exon6	c.C922T	p.H308Y	TGGGGCCATAGGT	.	136.0	29.0	135.0	0.0	.	72	.	.	Atlas-SNP
NOL4	8715	hgsc.bcm.edu	hg19	18	31432918	31432918	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	NOL4	NM_003787	exon11	c.G1805A	p.S602N	GTTGGACTCAGCT	.	82.0	24.0	68.0	0.0	.	139	.	.	Atlas-SNP
EPG5	57724	hgsc.bcm.edu	hg19	18	43496496	43496496	+	Silent	SNP	C	C	T	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	EPG5	NM_020964	exon18	c.G3291A	p.Q1097Q	GACACCCTGAGGG	.	52.0	18.0	106.0	0.0	.	199	.	.	Atlas-SNP
DCC	1630	hgsc.bcm.edu	hg19	18	50278724	50278724	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	DCC	NM_005215	exon2	c.C392G	p.T131R	GTCGGACAGCAAA	.	128.0	33.0	173.0	0.0	.	360	.	.	Atlas-SNP
CNN2	1265	hgsc.bcm.edu	hg19	19	1036446	1036446	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	CNN2	NM_004368	exon6	c.G539A	p.G180D	AGTCGGGCATGAC	.	91.0	29.0	171.0	0.0	.	26	.	.	Atlas-SNP
SLC1A6	6511	hgsc.bcm.edu	hg19	19	15064996	15064996	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	SLC1A6	NM_005071	exon7	c.G1315T	p.A439S	CTTGAGCAATGAA	.	98.0	26.0	112.0	0.0	.	111	.	.	Atlas-SNP
ZNF254	9534	hgsc.bcm.edu	hg19	19	24270141	24270141	+	Splice_Site	SNP	T	T	C	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	ZNF254	NM_203282	exon1	c.30+2T>C	.	AAATGGTGAGAAT	.	94.0	7.0	98.0	0.0	.	88	.	.	Atlas-SNP
URI1	8725	hgsc.bcm.edu	hg19	19	30505901	30505901	+	Silent	SNP	T	T	G	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	.	NM_003796	exon11	c.T1533G	p.V511V	GGAAGTTCTGTTG	.	145.0	38.0	193.0	0.0	.	.	.	.	Atlas-SNP
ZNF536	9745	hgsc.bcm.edu	hg19	19	30936438	30936438	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	ZNF536	NM_014717	exon2	c.C1969A	p.R657S	CGGGACCGCAAGG	.	122.0	40.0	146.0	0.0	.	424	.	.	Atlas-SNP
TSHZ3	57616	hgsc.bcm.edu	hg19	19	31770240	31770240	+	Silent	SNP	G	G	A	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	TSHZ3	NM_020856	exon2	c.C459T	p.S153S	GCTACTGCTGCTG	.	148.0	6.0	153.0	0.0	.	549	.	.	Atlas-SNP
NUDT19	390916	hgsc.bcm.edu	hg19	19	33200280	33200280	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	NUDT19	NM_001105570	exon2	c.A904G	p.M302V	GATGGGATGGTCC	.	56.0	20.0	62.0	0.0	.	15	.	.	Atlas-SNP
ATP4A	495	hgsc.bcm.edu	hg19	19	36042385	36042385	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	ATP4A,NS,carcinoma,0,1	ATP4A	NM_000704	exon19	c.C2849A	p.T950K	CGGCGCGTCTTGC	.	69.0	5.0	102.0	0.0	.	123	.	.	Atlas-SNP
TMEM239	100288797	hgsc.bcm.edu	hg19	20	2797440	2797440	+	Silent	SNP	A	A	T	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	.	NM_001167670	exon2	c.A240T	p.A80A	CCATGCACTCTTC	.	31.0	6.0	52.0	0.0	.	.	.	.	Atlas-SNP
SLC23A2	9962	hgsc.bcm.edu	hg19	20	4842648	4842648	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	SLC23A2	NM_203327	exon15	c.A1570C	p.I524L	AGAAGATCGAAAA	.	169.0	38.0	210.0	0.0	.	62	.	.	Atlas-SNP
BPI	671	hgsc.bcm.edu	hg19	20	36954702	36954702	+	Silent	SNP	C	C	A	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	BPI,colon,carcinoma,0,1	BPI	NM_001725	exon10	c.C1041A	p.I347I	ACAGATCCATGTC	.	53.0	20.0	88.0	1.0	.	67	.	.	Atlas-SNP
PLTP	5360	hgsc.bcm.edu	hg19	20	44531117	44531117	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	PLTP	NM_006227	exon11	c.C1069A	p.P357T	GGTCTGGTGGGAC	.	104.0	26.0	145.0	0.0	.	49	.	.	Atlas-SNP
DIDO1	11083	hgsc.bcm.edu	hg19	20	61525146	61525146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	DIDO1	NM_080797	exon12	c.G2973A	p.M991I	TTCCACCATGTGG	.	72.0	30.0	84.0	0.0	.	321	.	.	Atlas-SNP
KRTAP6-1	337966	hgsc.bcm.edu	hg19	21	31986189	31986189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	KRTAP6-1	NM_181602	exon1	c.C35T	p.T12I	CCAGGGGTGCCAT	.	118.0	34.0	127.0	0.0	.	21	.	.	Atlas-SNP
KCNJ6	3763	hgsc.bcm.edu	hg19	21	38997477	38997477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	KCNJ6	NM_002240	exon4	c.A1256G	p.N419S	GATTCATTCTCCA	.	46.0	11.0	68.0	0.0	.	58	.	.	Atlas-SNP
MYO18B	84700	hgsc.bcm.edu	hg19	22	26164310	26164310	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	MYO18B	NM_032608	exon4	c.C427A	p.P143T	ACTGTCCCCTTCA	.	172.0	47.0	231.0	0.0	.	322	.	.	Atlas-SNP
GGA1	26088	hgsc.bcm.edu	hg19	22	38012994	38012994	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	GGA1	NM_001001560	exon3	c.A194T	p.Q65L	CGATCCAGGCCTT	.	101.0	21.0	138.0	0.0	.	39	.	.	Atlas-SNP
NCAPH2	29781	hgsc.bcm.edu	hg19	22	50961535	50961535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	NCAPH2	NM_001185011	exon19	c.G1620T	p.E540D	TGCGGAGCTGGTG	.	80.0	33.0	82.0	0.0	.	69	.	.	Atlas-SNP
RBM10	8241	hgsc.bcm.edu	hg19	X	47028882	47028882	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	RBM10	NM_001204468	exon3	c.G381C	p.E127D	ATCTGAGGAGCAG	.	41.0	26.0	68.0	0.0	.	117	.	.	Atlas-SNP
DLG3	1741	hgsc.bcm.edu	hg19	X	69669569	69669569	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	DLG3	NM_021120	exon4	c.A563C	p.E188A	TGAATGAGGTGGA	.	33.0	17.0	50.0	0.0	.	100	.	.	Atlas-SNP
OR13H1	347468	hgsc.bcm.edu	hg19	X	130678861	130678861	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	OR13H1	NM_001004486	exon1	c.T814A	p.F272I	GACAAGTTTATCT	.	246.0	134.0	281.0	1.0	.	41	.	.	Atlas-SNP
IDS	3423	hgsc.bcm.edu	hg19	X	148564324	148564324	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	IDS	NM_000202	exon9	c.T1606C	p.Y536H	CATTATACATATT	.	64.0	41.0	95.0	0.0	.	46	.	.	Atlas-SNP
IFI30	10437	hgsc.bcm.edu	hg19	19	18288521	18288521	+	Splice_Site	DEL	A	A	-	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	IFI30	NM_006332	exon6	c.637-1A>-	.	.	.	107.0	27.0	120.0	0.0	.	12	.	.	Atlas-INDEL
APOB	338	hgsc.bcm.edu	hg19	2	21229990	21230013	+	In_Frame_Del	DEL	TCCAGGAATTTGAAAGGTCCTGGG	TCCAGGAATTTGAAAGGTCCTGGG	-	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	TCCAGGAATTTGAAAGGTCCTGGG	TCCAGGAATTTGAAAGGTCCTGGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	APOB	NM_000384	exon26	c.9728_9751del	p.3243_3251del	.	.	99.0	13.0	180.0	0.0	.	761	.	.	Atlas-INDEL
APOB	338	hgsc.bcm.edu	hg19	2	21230017	21230017	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	APOB	NM_000384	exon26	c.9724delC	p.L3242fs	.	.	99.0	13.0	170.0	0.0	.	761	.	.	Atlas-INDEL
BEND3	57673	hgsc.bcm.edu	hg19	6	107390291	107390303	+	Frame_Shift_Del	DEL	GGATCTTGCAAAA	GGATCTTGCAAAA	-	novel		TCGA-LG-A9QD-01A-11D-A382-10	TCGA-LG-A9QD-10A-01D-A385-10	GGATCTTGCAAAA	GGATCTTGCAAAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5fcdf560-e18b-49e8-8a70-aad63a200d43	76fbd0ec-29e4-48fe-bfa2-438285845c0e	.	BEND3	NM_001080450	exon5	c.2093_2105del	p.698_702del	.	.	157.0	29.0	246.0	0.0	.	70	.	.	Atlas-INDEL