Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
PRDM2	7799	hgsc.bcm.edu	hg19	1	14105088	14105088	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	PRDM2	NM_015866	exon8	c.G798T	p.L266F	TGATTTGGGGGAA	.	131.0	8.0	174.0	0.0	.	147	.	.	Atlas-SNP
MAP7D1	55700	hgsc.bcm.edu	hg19	1	36638161	36638161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	MAP7D1	NM_018067	exon4	c.G557A	p.R186H	AGCAACGTCTTAA	.	213.0	17.0	327.0	0.0	.	62	.	.	Atlas-SNP
NASP	4678	hgsc.bcm.edu	hg19	1	46073372	46073372	+	Missense_Mutation	SNP	G	G	C	rs202027114		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	NASP	NM_002482	exon6	c.G789C	p.Q263H	GAAGCAGGGAGAG	.	137.0	7.0	143.0	0.0	.	77	.	G|0.995;C|0.005	Atlas-SNP
HIPK1	204851	hgsc.bcm.edu	hg19	1	114483116	114483116	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	HIPK1	NM_198268	exon2	c.T111A	p.S37R	ACAGAGTAGCAAC	.	69.0	17.0	121.0	0.0	.	195	.	.	Atlas-SNP
OR10J1	26476	hgsc.bcm.edu	hg19	1	159410510	159410510	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	OR10J1	NM_012351	exon1	c.G962A	p.X321X	TTTCCTGACCATG	.	42.0	25.0	40.0	0.0	.	118	.	.	Atlas-SNP
SMYD1	150572	hgsc.bcm.edu	hg19	2	88383836	88383836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	SMYD1	NM_198274	exon2	c.C139T	p.L47F	TCCAGCCTTGTTA	.	119.0	54.0	109.0	0.0	.	95	.	.	Atlas-SNP
SP9	100131390	hgsc.bcm.edu	hg19	2	175200837	175200837	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	SP9	NM_001145250	exon2	c.A24T	p.E8D	CTAGGAAGAGCCG	.	230.0	113.0	188.0	0.0	.	15	.	.	Atlas-SNP
TRIP12	9320	hgsc.bcm.edu	hg19	2	230668295	230668295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	TRIP12	NM_004238	exon19	c.G2765A	p.R922K	TCTCTTCTGAAGT	.	158.0	67.0	150.0	0.0	.	207	.	.	Atlas-SNP
MAP4	4134	hgsc.bcm.edu	hg19	3	47958322	47958322	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	MAP4	NM_001134364	exon7	c.A995C	p.K332T	ACATTCTTGGCTG	.	70.0	17.0	98.0	0.0	.	176	.	.	Atlas-SNP
BSN	8927	hgsc.bcm.edu	hg19	3	49693730	49693730	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	BSN	NM_003458	exon5	c.T6741G	p.I2247M	CATGATTGCCCCC	.	61.0	22.0	104.0	0.0	.	272	.	.	Atlas-SNP
ZBTB20	26137	hgsc.bcm.edu	hg19	3	114070355	114070355	+	Silent	SNP	C	C	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	ZBTB20,NS,carcinoma,0,1	ZBTB20	NM_001164342	exon4	c.G570A	p.T190T	GATGCGCGTGCAC	.	41.0	7.0	36.0	0.0	.	157	.	.	Atlas-SNP
HEG1	57493	hgsc.bcm.edu	hg19	3	124731574	124731574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	HEG1	NM_020733	exon6	c.C2849T	p.P950L	GTTTGGGGAGAAG	.	45.0	15.0	74.0	0.0	.	109	.	.	Atlas-SNP
SLC6A19	340024	hgsc.bcm.edu	hg19	5	1221849	1221849	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	SLC6A19	NM_001003841	exon12	c.C1735A	p.P579T	TCCTACCCGAACT	.	127.0	61.0	142.0	0.0	.	99	.	.	Atlas-SNP
APC	324	hgsc.bcm.edu	hg19	5	112174286	112174286	+	Nonsense_Mutation	SNP	C	C	T	rs75239284	alternate_allele	TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	APC	NM_001127510	exon17	c.C2995T	p.Q999X	TATGGTCAATACC	.	104.0	48.0	96.0	0.0	.	4158	.	.	Atlas-SNP
PCDHGA5	56110	hgsc.bcm.edu	hg19	5	140745479	140745479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	PCDHGA5	NM_032054	exon1	c.C1582A	p.L528I	AGAGACCTACAGT	.	82.0	16.0	81.0	0.0	.	215	.	.	Atlas-SNP
MBOAT1	154141	hgsc.bcm.edu	hg19	6	20124766	20124766	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	MBOAT1	NM_001080480	exon8	c.G780T	p.K260N	AAAGGTCTTCGTT	.	172.0	75.0	147.0	0.0	.	48	.	.	Atlas-SNP
CDSN	1041	hgsc.bcm.edu	hg19	6	31084730	31084730	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	CDSN	NM_001264	exon2	c.A662G	p.D221G	GGGATGTCCGAAC	.	125.0	66.0	96.0	0.0	.	48	.	.	Atlas-SNP
UBR2	23304	hgsc.bcm.edu	hg19	6	42610159	42610159	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	UBR2	NM_015255	exon18	c.T2037G	p.Y679X	GATTTATTACTAC	.	56.0	27.0	56.0	0.0	.	134	.	.	Atlas-SNP
CRIP3	401262	hgsc.bcm.edu	hg19	6	43274193	43274193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	CRIP3	NM_206922	exon5	c.G391A	p.V131I	AATAGACGGGCTC	.	90.0	5.0	89.0	0.0	.	30	.	.	Atlas-SNP
COL19A1	1310	hgsc.bcm.edu	hg19	6	70894595	70894595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	COL19A1	NM_001858	exon45	c.G2776A	p.G926R	TTATAGGGAATAA	.	97.0	31.0	88.0	0.0	.	232	.	.	Atlas-SNP
RARS2	57038	hgsc.bcm.edu	hg19	6	88227931	88227931	+	Silent	SNP	A	A	G	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	RARS2	NM_020320	exon17	c.T1467C	p.C489C	TTGTAAACAAGCA	.	123.0	20.0	106.0	0.0	.	61	.	.	Atlas-SNP
CAV1	857	hgsc.bcm.edu	hg19	7	116165144	116165144	+	Missense_Mutation	SNP	G	G	A	rs370105972	alternate_allele	TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	CAV1	NM_001753	exon1	c.G28A	p.E10K	GACTCGGAGGTAG	.	104.0	22.0	105.0	0.0	.	13	.	.	Atlas-SNP
FBXO43	286151	hgsc.bcm.edu	hg19	8	101153180	101153180	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	FBXO43	NM_001029860	exon2	c.A1302G	p.L434L	ATTCTTTAAGCTA	.	354.0	38.0	151.0	0.0	.	155	.	.	Atlas-SNP
KCNV1	27012	hgsc.bcm.edu	hg19	8	110980791	110980791	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	KCNV1	NM_014379	exon3	c.C1029T	p.Y343Y	TTCTTCGTAACAC	.	109.0	21.0	55.0	0.0	.	101	.	.	Atlas-SNP
ARHGAP39	80728	hgsc.bcm.edu	hg19	8	145755886	145755886	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	ARHGAP39	NM_025251	exon13	c.G3265C	p.E1089Q	TGTTCTCGAAGAT	.	203.0	28.0	99.0	0.0	.	80	.	.	Atlas-SNP
UBQLN1	29979	hgsc.bcm.edu	hg19	9	86297921	86297921	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	UBQLN1	NM_053067	exon3	c.A393G	p.S131S	AGGAGTTGATGAT	.	64.0	6.0	92.0	0.0	.	49	.	.	Atlas-SNP
KCNMA1	3778	hgsc.bcm.edu	hg19	10	79397093	79397093	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	KCNMA1	NM_001161352	exon1	c.T308A	p.F103Y	ATGATGAAGAGGC	.	60.0	22.0	113.0	0.0	.	370	.	.	Atlas-SNP
SORCS3	22986	hgsc.bcm.edu	hg19	10	106849559	106849559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	SORCS3	NM_014978	exon6	c.C1055T	p.A352V	AGGAGGCGGACCT	.	117.0	40.0	117.0	0.0	.	282	.	.	Atlas-SNP
PHRF1	57661	hgsc.bcm.edu	hg19	11	610529	610529	+	Missense_Mutation	SNP	C	C	T	rs201225978	bycluster	TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	PHRF1	NM_020901	exon16	c.C4442T	p.P1481L	CTGCCCCGGCCCA	.	15.0	7.0	23.0	0.0	.	188	.	.	Atlas-SNP
OR51G2	81282	hgsc.bcm.edu	hg19	11	4936112	4936112	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	OR51G2	NM_001005238	exon1	c.T782C	p.I261T	AGGCCAATCATGG	.	110.0	23.0	118.0	0.0	.	70	.	.	Atlas-SNP
CELF1	10658	hgsc.bcm.edu	hg19	11	47510522	47510522	+	Silent	SNP	A	A	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	CELF1	NM_001172639	exon4	c.T126A	p.A42A	CTTGATAGCATCA	.	143.0	31.0	143.0	0.0	.	43	.	.	Atlas-SNP
NEU3	10825	hgsc.bcm.edu	hg19	11	74716816	74716816	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	NEU3	NM_006656	exon3	c.G665A	p.C222Y	TCTTTTGCTTCCA	.	44.0	15.0	46.0	0.0	.	50	.	.	Atlas-SNP
NEU3	10825	hgsc.bcm.edu	hg19	11	74717089	74717089	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	NEU3	NM_006656	exon3	c.A938G	p.Q313R	GTTGCCAAGGGAG	.	31.0	6.0	37.0	0.0	.	50	.	.	Atlas-SNP
TIMELESS	8914	hgsc.bcm.edu	hg19	12	56822710	56822710	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	TIMELESS	NM_003920	exon11	c.A1261T	p.M421L	GCATCATCTCATA	.	91.0	37.0	83.0	0.0	.	107	.	.	Atlas-SNP
MYO1A	4640	hgsc.bcm.edu	hg19	12	57432386	57432386	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	MYO1A	NM_005379	exon17	c.A1570T	p.N524Y	GGTCATTATTCTT	.	83.0	13.0	89.0	0.0	.	122	.	.	Atlas-SNP
MTERFD3	80298	hgsc.bcm.edu	hg19	12	107372216	107372216	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	MTERFD3	NM_001033050	exon3	c.G277C	p.A93P	CTACAGCAGTCTC	.	80.0	43.0	75.0	0.0	.	32	.	.	Atlas-SNP
KSR2	283455	hgsc.bcm.edu	hg19	12	118199277	118199277	+	Silent	SNP	C	C	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	KSR2,NS,carcinoma,0,1	KSR2	NM_173598	exon4	c.G438A	p.T146T	CTTCCCCGTCTCT	.	70.0	29.0	82.0	0.0	.	208	.	.	Atlas-SNP
FREM2	341640	hgsc.bcm.edu	hg19	13	39264296	39264296	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	FREM2	NM_207361	exon1	c.G2815T	p.E939X	GATGATGAAGTGC	.	72.0	15.0	68.0	0.0	.	385	.	.	Atlas-SNP
MGAT2	4247	hgsc.bcm.edu	hg19	14	50089030	50089030	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	MGAT2	NM_002408	exon1	c.G1044A	p.W348X	GGACTGGACTCTT	.	90.0	22.0	92.0	0.0	.	26	.	.	Atlas-SNP
TOMM20L	387990	hgsc.bcm.edu	hg19	14	58874094	58874094	+	Missense_Mutation	SNP	G	G	A	rs141434824	bycluster	TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	TOMM20L,NS,carcinoma,0,1	TOMM20L	NM_207377	exon4	c.G313A	p.E105K	GTGTGCGAGCAAC	.	93.0	4.0	127.0	1.0	.	8	.	G|1.000;A|0.000	Atlas-SNP
HDDC3	374659	hgsc.bcm.edu	hg19	15	91475134	91475134	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	HDDC3	NM_198527	exon3	c.C209T	p.T70I	TCCAGGGTGGTGT	.	23.0	8.0	36.0	0.0	.	8	.	.	Atlas-SNP
IRX6	79190	hgsc.bcm.edu	hg19	16	55362664	55362664	+	Missense_Mutation	SNP	C	C	G	rs143272826	alternate_allele	TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	IRX6	NM_024335	exon5	c.C774G	p.D258E	GGAAGACCTGGAG	.	30.0	11.0	46.0	0.0	.	66	.	C|1.000;A|0.000	Atlas-SNP
CTU2	348180	hgsc.bcm.edu	hg19	16	88776364	88776364	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	CTU2	NM_001012759	exon3	c.C162G	p.F54L	GGCCTTCTACGTC	.	39.0	11.0	66.0	0.0	.	66	.	.	Atlas-SNP
ANKRD12	23253	hgsc.bcm.edu	hg19	18	9208758	9208758	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	ANKRD12	NM_015208	exon5	c.G408C	p.Q136H	AAAACAGATGGCA	.	169.0	49.0	174.0	0.0	.	167	.	.	Atlas-SNP
SETBP1	26040	hgsc.bcm.edu	hg19	18	42643643	42643643	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	SETBP1	NM_015559	exon6	c.G4771C	p.E1591Q	GGGAGTGAGAGCG	.	206.0	55.0	280.0	0.0	.	577	.	.	Atlas-SNP
TNFRSF11A	8792	hgsc.bcm.edu	hg19	18	60036567	60036567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	TNFRSF11A,NS,NS,0,1	TNFRSF11A	NM_003839	exon9	c.G1417A	p.A473T	CAGTGCGCCTATG	.	26.0	7.0	35.0	0.0	.	51	.	.	Atlas-SNP
ADNP2	22850	hgsc.bcm.edu	hg19	18	77896211	77896211	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	ADNP2	NM_014913	exon4	c.C2915A	p.S972Y	ATGATTCCAGTTT	.	52.0	18.0	49.0	0.0	.	102	.	.	Atlas-SNP
COL5A3	50509	hgsc.bcm.edu	hg19	19	10080566	10080566	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	COL5A3	NM_015719	exon55	c.A3969T	p.R1323S	CCCTTCTCTGCCT	.	95.0	41.0	110.0	0.0	.	243	.	.	Atlas-SNP
PPAN-P2RY11	692312	hgsc.bcm.edu	hg19	19	10225190	10225190	+	Missense_Mutation	SNP	G	G	A	rs368706939		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	PPAN-P2RY11	NM_001040664	exon13	c.G2161A	p.V721M	CCCTACGTGGGCT	.	43.0	23.0	38.0	0.0	.	81	.	.	Atlas-SNP
ZNF567	163081	hgsc.bcm.edu	hg19	19	37203683	37203683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	ZNF567	NM_152603	exon3	c.G44A	p.G15E	TTTCAGGGTGTCA	.	89.0	50.0	103.0	0.0	.	61	.	.	Atlas-SNP
ERF	2077	hgsc.bcm.edu	hg19	19	42754547	42754547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	ERF	NM_006494	exon2	c.C193T	p.R65W	ACAGCCGGGCCAC	.	82.0	41.0	86.0	0.0	.	47	.	.	Atlas-SNP
ZFP28	140612	hgsc.bcm.edu	hg19	19	57058902	57058902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	ZFP28	NM_020828	exon3	c.C326T	p.A109V	ATGTGGCTGTAGA	.	175.0	35.0	160.0	0.0	.	99	.	.	Atlas-SNP
ZNF470	388566	hgsc.bcm.edu	hg19	19	57086027	57086027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	ZNF470	NM_001001668	exon5	c.G208T	p.D70Y	AAACCAGATGTGA	.	83.0	45.0	92.0	0.0	.	103	.	.	Atlas-SNP
MAVS	57506	hgsc.bcm.edu	hg19	20	3845079	3845079	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	MAVS	NM_020746	exon6	c.G802T	p.E268X	GCTGCAGAGGGTA	.	53.0	21.0	55.0	0.0	.	34	.	.	Atlas-SNP
SLC2A10	81031	hgsc.bcm.edu	hg19	20	45354604	45354604	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	SLC2A10,NS,carcinoma,0,1	SLC2A10	NM_030777	exon2	c.C929G	p.S310C	CCCTGTCCGTCAG	.	59.0	24.0	43.0	0.0	.	75	.	.	Atlas-SNP
COL4A6	1288	hgsc.bcm.edu	hg19	X	107422545	107422545	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	COL4A6	NM_001847	exon26	c.T2258G	p.I753S	CCAAAGATGTCAC	.	363.0	165.0	349.0	0.0	.	270	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113347573	113347574	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	CSMD3	NM_198123	exon45	c.7150_7151insT	p.V2384fs	.	.	197.0	21.0	96.0	0.0	.	2325	.	.	Atlas-Indel,Pindel
EFCAB3	146779	hgsc.bcm.edu	hg19	17	60464748	60464748	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	EFCAB3	NM_001144933	exon5	c.277delG	p.E93fs	.	.	91.0	39.0	63.0	0.0	.	71	.	.	Atlas-Indel,Pindel
SREBF1	6720	hgsc.bcm.edu	hg19	17	17723609	17723613	+	Frame_Shift_Del	DEL	TGGAG	TGGAG	-	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	TGGAG	TGGAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	SREBF1	NM_001005291	exon3	c.405_409del	p.135_137del	.	.	53.0	24.0	48.0	0.0	.	47	.	.	Atlas-Indel,Pindel
ZNF844	284391	hgsc.bcm.edu	hg19	19	12187711	12187711	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	ZNF844	NM_001136501	exon4	c.1775delC	p.T592fs	.	.	110.0	28.0	104.0	0.0	.	69	.	.	Atlas-Indel,Pindel
NCOA5	57727	hgsc.bcm.edu	hg19	20	44695721	44695721	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	NCOA5	NM_020967	exon5	c.603delT	p.S201fs	.	.	164.0	71.0	138.0	0.0	.	58	.	.	Atlas-Indel,Pindel