Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
PGD	5226	hgsc.bcm.edu	hg19	1	10468143	10468143	+	Silent	SNP	C	C	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	PGD	NM_002631	exon6	c.C465T	p.T155T	CAAGACCATCTTC	.	144.0	10.0	105.0	0.0	.	39	.	.	Atlas-SNP
UBR4	23352	hgsc.bcm.edu	hg19	1	19499468	19499468	+	Silent	SNP	C	C	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	UBR4	NM_020765	exon25	c.G3411A	p.E1137E	AAAATGCTCATCC	.	157.0	12.0	138.0	0.0	.	415	.	.	Atlas-SNP
ZYG11B	79699	hgsc.bcm.edu	hg19	1	53279323	53279323	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	ZYG11B	NM_024646	exon11	c.G1811A	p.G604E	CAGCTGGAATTAT	.	97.0	14.0	84.0	0.0	.	61	.	.	Atlas-SNP
SLAMF1	6504	hgsc.bcm.edu	hg19	1	160589594	160589594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	SLAMF1,NS,carcinoma,0,1	SLAMF1	NM_003037	exon5	c.C836T	p.T279M	TAGATCGTAAGGC	.	103.0	8.0	98.0	1.0	.	74	.	.	Atlas-SNP
ZC3H11A	9877	hgsc.bcm.edu	hg19	1	203797536	203797536	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	ZC3H11A	NM_014827	exon7	c.T284C	p.L95P	TTTTCCTACCTCC	.	214.0	11.0	177.0	0.0	.	71	.	.	Atlas-SNP
CNST	163882	hgsc.bcm.edu	hg19	1	246811218	246811218	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	CNST	NM_152609	exon9	c.A1715G	p.D572G	ACGACGACTCCGA	.	156.0	9.0	117.0	0.0	.	73	.	.	Atlas-SNP
STARD7	56910	hgsc.bcm.edu	hg19	2	96861116	96861116	+	Silent	SNP	C	C	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	STARD7	NM_020151	exon2	c.G462A	p.R154R	TGGGCGCCGCCAC	.	154.0	13.0	85.0	0.0	.	49	.	.	Atlas-SNP
CTDSPL	10217	hgsc.bcm.edu	hg19	3	37988645	37988645	+	Silent	SNP	A	A	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	CTDSPL	NM_001008392	exon2	c.A177C	p.P59P	CCCTCCACCCAGC	.	71.0	5.0	50.0	0.0	.	17	.	.	Atlas-SNP
CSRNP1	64651	hgsc.bcm.edu	hg19	3	39184867	39184867	+	Silent	SNP	C	C	G	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	CSRNP1	NM_033027	exon5	c.G1449C	p.V483V	GGGTGGCACTGAG	.	130.0	9.0	111.0	0.0	.	59	.	.	Atlas-SNP
SEC22C	9117	hgsc.bcm.edu	hg19	3	42610528	42610528	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	SEC22C	NM_001201584	exon2	c.T11G	p.I4S	AAAAAGATCACGG	.	304.0	21.0	250.0	0.0	.	27	.	.	Atlas-SNP
AP2M1	1173	hgsc.bcm.edu	hg19	3	183898651	183898651	+	Missense_Mutation	SNP	G	G	T	rs375328073	alternate_allele	TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	AP2M1	NM_001025205	exon5	c.G438T	p.Q146H	AGAGCAGTCACAG	.	231.0	19.0	197.0	0.0	.	35	.	.	Atlas-SNP
KIAA1239	57495	hgsc.bcm.edu	hg19	4	37447618	37447618	+	Silent	SNP	A	A	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	KIAA1239	NM_001144990	exon7	c.A4008T	p.G1336G	GGATGGATCCGAT	.	116.0	6.0	73.0	0.0	.	79	.	.	Atlas-SNP
KLB	152831	hgsc.bcm.edu	hg19	4	39448160	39448160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	KLB	NM_175737	exon4	c.C1814T	p.S605L	GGGCCTCGGTCCT	.	136.0	9.0	93.0	0.0	.	95	.	.	Atlas-SNP
CORIN	10699	hgsc.bcm.edu	hg19	4	47663761	47663761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	CORIN	NM_006587	exon12	c.C1702A	p.Q568K	AGGTTTGATTGTC	.	108.0	6.0	64.0	0.0	.	154	.	.	Atlas-SNP
CASP6	839	hgsc.bcm.edu	hg19	4	110615726	110615726	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	CASP6	NM_001226	exon5	c.C438G	p.D146E	ACACTTGTCTCCT	.	271.0	16.0	216.0	0.0	.	25	.	.	Atlas-SNP
IQGAP2	10788	hgsc.bcm.edu	hg19	5	75893275	75893275	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	IQGAP2	NM_006633	exon10	c.G919T	p.V307L	GCTGCAGTGGACC	.	184.0	13.0	168.0	0.0	.	186	.	.	Atlas-SNP
MSH3	4437	hgsc.bcm.edu	hg19	5	80063794	80063794	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	MSH3	NM_002439	exon14	c.C1939G	p.H647D	TTATATCACCTAA	.	125.0	9.0	99.0	0.0	.	129	.	.	Atlas-SNP
SH3TC2	79628	hgsc.bcm.edu	hg19	5	148407630	148407630	+	Silent	SNP	G	G	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	SH3TC2	NM_024577	exon11	c.C1665A	p.I555I	AATGTGGATGGCC	.	262.0	17.0	186.0	0.0	.	178	.	.	Atlas-SNP
CNOT6	57472	hgsc.bcm.edu	hg19	5	179956354	179956354	+	Silent	SNP	A	A	G	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	CNOT6	NM_015455	exon2	c.A78G	p.G26G	AAATGGAAAGAAA	.	316.0	25.0	252.0	0.0	.	47	.	.	Atlas-SNP
FLT4	2324	hgsc.bcm.edu	hg19	5	180048894	180048894	+	Silent	SNP	G	G	A	rs143634822		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	FLT4_ENST00000376868,NS,carcinoma,0,3	FLT4	NM_182925	exon13	c.C1668T	p.D556D	GAAGCCGTCGGGG	.	194.0	14.0	132.0	0.0	.	356	.	G|1.000;A|0.000	Atlas-SNP
OR2V2	285659	hgsc.bcm.edu	hg19	5	180582509	180582509	+	Silent	SNP	C	C	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	OR2V2	NM_206880	exon1	c.C567T	p.A189A	GCTGGCCTGTGTA	.	249.0	20.0	192.0	0.0	.	56	.	.	Atlas-SNP
EPM2A	7957	hgsc.bcm.edu	hg19	6	145948714	145948714	+	Silent	SNP	G	G	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	EPM2A	NM_005670	exon4	c.C834T	p.C278C	CCAGCCGCAGACA	.	74.0	4.0	82.0	0.0	.	21	.	.	Atlas-SNP
EIF3B	8662	hgsc.bcm.edu	hg19	7	2406209	2406209	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	EIF3B	NM_001037283	exon8	c.A1339C	p.S447R	ACGCTTAGCATCT	.	172.0	17.0	131.0	0.0	.	54	.	.	Atlas-SNP
MACC1	346389	hgsc.bcm.edu	hg19	7	20201371	20201371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	MACC1	NM_182762	exon4	c.G115A	p.E39K	CCATACCTGTAAT	.	60.0	7.0	36.0	0.0	.	99	.	.	Atlas-SNP
IL6	3569	hgsc.bcm.edu	hg19	7	22767126	22767126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	IL6	NM_000600	exon2	c.C83T	p.A28V	TCCCTGCCCCAGT	.	104.0	7.0	71.0	0.0	.	30	.	.	Atlas-SNP
CHN2	1124	hgsc.bcm.edu	hg19	7	29407578	29407578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	CHN2	NM_004067	exon3	c.C119T	p.P40L	CTCGTCCCAAGAG	.	59.0	6.0	35.0	0.0	.	98	.	.	Atlas-SNP
IKZF1	10320	hgsc.bcm.edu	hg19	7	50444279	50444279	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	IKZF1	NM_006060	exon4	c.C209A	p.A70D	GGCGTGCCTGTGA	.	122.0	12.0	89.0	0.0	.	613	.	.	Atlas-SNP
CYP3A5	1577	hgsc.bcm.edu	hg19	7	99273802	99273802	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	CYP3A5	NM_001190484	exon2	c.A101G	p.K34R	AGTCTCTTAAAAA	.	273.0	28.0	169.0	0.0	.	46	.	.	Atlas-SNP
GPR22	2845	hgsc.bcm.edu	hg19	7	107115727	107115727	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	GPR22	NM_005295	exon3	c.C1222A	p.P408T	ATAGATCCTAAAA	.	121.0	7.0	81.0	0.0	.	43	.	.	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	hg19	8	3072177	3072177	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	CSMD1	NM_033225	exon30	c.T4709C	p.I1570T	TTCATTATATTTC	.	144.0	9.0	118.0	0.0	.	1469	.	.	Atlas-SNP
UNC5D	137970	hgsc.bcm.edu	hg19	8	35608295	35608295	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	UNC5D	NM_080872	exon13	c.T2131C	p.Y711H	AGAGTTTACTGTG	.	284.0	23.0	204.0	0.0	.	393	.	.	Atlas-SNP
RUNX1T1	862	hgsc.bcm.edu	hg19	8	93026974	93026974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	RUNX1T1_ENST00000436581,NS,carcinoma,0,3	RUNX1T1	NM_001198679	exon4	c.C478T	p.P160S	AGGAAGGCCCATT	.	110.0	7.0	66.0	0.0	.	516	.	.	Atlas-SNP
SCRIB	23513	hgsc.bcm.edu	hg19	8	144891130	144891130	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	SCRIB	NM_015356	exon15	c.G1764T	p.Q588H	CTCAGGCTGCCCC	.	97.0	5.0	101.0	0.0	.	192	.	.	Atlas-SNP
GNAQ	2776	hgsc.bcm.edu	hg19	9	80537112	80537112	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	GNAQ,NS,carcinoma,0,2	GNAQ	NM_002072	exon2	c.A286T	p.T96S	TGAGTGTGTCCAT	.	122.0	5.0	92.0	1.0	.	384	.	.	Atlas-SNP
RNF20	56254	hgsc.bcm.edu	hg19	9	104303192	104303192	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	RNF20	NM_019592	exon5	c.T563C	p.I188T	CCCAGATTGTGAC	.	143.0	7.0	136.0	0.0	.	110	.	.	Atlas-SNP
PARD3	56288	hgsc.bcm.edu	hg19	10	34671814	34671814	+	Silent	SNP	G	G	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	PARD3	NM_001184788	exon9	c.C1053T	p.P351P	AATGATGGGTGTA	.	249.0	16.0	229.0	0.0	.	131	.	.	Atlas-SNP
PCDH15	65217	hgsc.bcm.edu	hg19	10	55719518	55719518	+	Silent	SNP	G	G	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	PCDH15	NM_001142763	exon24	c.C3111T	p.I1037I	GCGTGGGATCTCA	.	75.0	8.0	58.0	0.0	.	1715	.	.	Atlas-SNP
BTAF1	9044	hgsc.bcm.edu	hg19	10	93749020	93749020	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	BTAF1	NM_003972	exon20	c.A2537G	p.N846S	AGACCAACCAGGA	.	112.0	9.0	73.0	0.0	.	148	.	.	Atlas-SNP
SH3PXD2A	9644	hgsc.bcm.edu	hg19	10	105362908	105362908	+	Silent	SNP	G	G	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	SH3PXD2A	NM_014631	exon14	c.C1983A	p.S661S	GGAAAAGGAGGCT	.	55.0	6.0	31.0	0.0	.	90	.	.	Atlas-SNP
KRTAP5-2	440021	hgsc.bcm.edu	hg19	11	1619335	1619335	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	KRTAP5-2	NM_001004325	exon1	c.G146A	p.C49Y	CCCCCACAGCTGG	.	189.0	17.0	136.0	0.0	.	38	.	.	Atlas-SNP
GANAB	23193	hgsc.bcm.edu	hg19	11	62400540	62400540	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	GANAB	NM_198335	exon9	c.C818A	p.P273Q	ATGCCTGGCAGAG	.	84.0	4.0	71.0	0.0	.	110	.	.	Atlas-SNP
DENND5B	160518	hgsc.bcm.edu	hg19	12	31552686	31552686	+	Silent	SNP	C	C	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	DENND5B	NM_144973	exon16	c.G2970T	p.L990L	AGTGGTCAGCTTC	.	205.0	11.0	144.0	0.0	.	114	.	.	Atlas-SNP
SPATA7	55812	hgsc.bcm.edu	hg19	14	88904449	88904449	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	SPATA7	NM_018418	exon12	c.A1483G	p.I495V	ATGCCTATTTATA	.	122.0	11.0	81.0	0.0	.	58	.	.	Atlas-SNP
SYNE3	161176	hgsc.bcm.edu	hg19	14	95916270	95916270	+	Missense_Mutation	SNP	C	C	T	rs201231576	bycluster;alternate_allele	TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	SYNE3	NM_152592	exon7	c.G1447A	p.E483K	TTACCTCGATCTG	.	336.0	22.0	294.0	0.0	.	130	.	.	Atlas-SNP
PAQR4	124222	hgsc.bcm.edu	hg19	16	3021213	3021213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	PAQR4	NM_152341	exon2	c.G222T	p.Q74H	GGGTCAGCTGGGC	.	145.0	8.0	111.0	0.0	.	23	.	.	Atlas-SNP
ZNF629	23361	hgsc.bcm.edu	hg19	16	30794703	30794703	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	ZNF629	NM_001080417	exon3	c.A946T	p.K316X	ATGGCTTCTCGCC	.	223.0	14.0	157.0	0.0	.	44	.	.	Atlas-SNP
PRPF8	10594	hgsc.bcm.edu	hg19	17	1554786	1554786	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	PRPF8	NM_006445	exon41	c.A6572G	p.Q2191R	ACATCCTGGGGTG	.	166.0	7.0	134.0	0.0	.	169	.	.	Atlas-SNP
KCNH6	81033	hgsc.bcm.edu	hg19	17	61613103	61613103	+	Missense_Mutation	SNP	G	G	A	rs370829183		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	KCNH6,NS,carcinoma,0,1	KCNH6	NM_030779	exon6	c.G1175A	p.R392H	TGGACCGCTACTC	.	165.0	10.0	131.0	0.0	.	122	.	.	Atlas-SNP
YIF1B	90522	hgsc.bcm.edu	hg19	19	38796124	38796124	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	YIF1B	NM_001039672	exon8	c.C813G	p.I271M	TGCCAAGATCTTC	.	281.0	23.0	242.0	0.0	.	47	.	.	Atlas-SNP
ATP1A3	478	hgsc.bcm.edu	hg19	19	42486221	42486221	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	ATP1A3	NM_001256214	exon9	c.A1070T	p.K357M	CAGTTCTTCCGGG	.	294.0	19.0	213.0	0.0	.	117	.	.	Atlas-SNP
LYPD3	27076	hgsc.bcm.edu	hg19	19	43968547	43968547	+	Silent	SNP	G	G	A	rs368122649		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	LYPD3	NM_014400	exon2	c.C141T	p.N47N	CATCTTGTTCGGG	.	111.0	12.0	95.0	0.0	.	24	.	.	Atlas-SNP
SYT3	84258	hgsc.bcm.edu	hg19	19	51129160	51129160	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	SYT3	NM_032298	exon5	c.T1396C	p.F466L	CTGAGAAGCCAGT	.	140.0	10.0	117.0	0.0	.	85	.	.	Atlas-SNP
NLRP8	126205	hgsc.bcm.edu	hg19	19	56499259	56499259	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	NLRP8	NM_176811	exon10	c.C3127G	p.L1043V	GACTGCCTATCCC	.	128.0	6.0	93.0	0.0	.	225	.	.	Atlas-SNP
A1BG	1	hgsc.bcm.edu	hg19	19	58863684	58863684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	A1BG	NM_130786	exon4	c.C578T	p.S193F	GGCTCAGAGAGGG	.	100.0	12.0	68.0	0.0	.	40	.	.	Atlas-SNP
GNAS	2778	hgsc.bcm.edu	hg19	20	57415270	57415270	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	GNAS	NM_016592	exon1	c.T109C	p.C37R	CTCTCCTGCTCCA	.	70.0	4.0	53.0	0.0	.	867	.	.	Atlas-SNP
NDUFV3	4731	hgsc.bcm.edu	hg19	21	44324091	44324091	+	Silent	SNP	A	A	G	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	NDUFV3	NM_021075	exon3	c.A969G	p.Q323Q	GCTGCAAGCCAGT	.	110.0	6.0	73.0	0.0	.	23	.	.	Atlas-SNP
ENTHD1	150350	hgsc.bcm.edu	hg19	22	40216999	40216999	+	Silent	SNP	T	T	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	ENTHD1	NM_152512	exon5	c.A831G	p.A277A	TTTACCTGCACCC	.	76.0	7.0	49.0	0.0	.	83	.	.	Atlas-SNP
P2RY4	5030	hgsc.bcm.edu	hg19	X	69479048	69479048	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	P2RY4	NM_002565	exon1	c.G427T	p.A143S	GTAGTGCCCGAAG	.	111.0	13.0	101.0	0.0	.	39	.	.	Atlas-SNP
ATP11C	286410	hgsc.bcm.edu	hg19	X	138878508	138878508	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	ATP11C	NM_001010986	exon12	c.A1139T	p.D380V	TCCTTATCCCATG	.	143.0	26.0	151.0	0.0	.	319	.	.	Atlas-SNP
KDM5D	8284	hgsc.bcm.edu	hg19	Y	21901515	21901515	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	KDM5D	NM_001146705	exon6	c.A556G	p.K186E	TATCTTTTACCTC	.	109.0	5.0	91.0	0.0	.	40	.	.	Atlas-SNP
ND4	0	hgsc.bcm.edu	hg19	MT	11050	11050	+	Silent	SNP	T	T	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	.	ENST00000361381	exon1	c.T291C	p.S97S	CCTCTCTATACTA	.	53.0	4.0	18.0	0.0	.	.	.	.	Atlas-SNP
IWS1	55677	hgsc.bcm.edu	hg19	2	128247456	128247457	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	IWS1	NM_017969	exon11	c.2111_2112insA	p.R704fs	.	.	159.0	11.0	126.0	0.0	.	61	.	.	Atlas-Indel,Pindel