Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm IFI16 3428 hgsc.bcm.edu hg19 1 159002321 159002321 + Missense_Mutation SNP A A G novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . IFI16 NM_005531 exon7 c.A1169G p.K390R TAAAGAAAAAAAC . 41.0 4.0 36.0 0.0 . 111 . . Atlas-SNP PLXNA2 5362 hgsc.bcm.edu hg19 1 208269429 208269429 + Missense_Mutation SNP C C A novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . PLXNA2 NM_025179 exon8 c.G1927T p.G643W TCTTCCCTGTCTC . 179.0 17.0 109.0 0.0 . 178 . . Atlas-SNP LPGAT1 9926 hgsc.bcm.edu hg19 1 211952355 211952355 + Missense_Mutation SNP T T C novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . LPGAT1 NM_014873 exon6 c.A759G p.I253M TGTATCTATTATC . 80.0 4.0 60.0 0.0 . 32 . . Atlas-SNP RAB4A 5867 hgsc.bcm.edu hg19 1 229434759 229434759 + Nonsense_Mutation SNP G G T novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . RAB4A NM_004578 exon6 c.G481T p.E161X ACAGGGGAGAATG . 155.0 23.0 85.0 0.0 . 29 . . Atlas-SNP APOB 338 hgsc.bcm.edu hg19 2 21259995 21259995 + Missense_Mutation SNP G G A novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . APOB NM_000384 exon6 c.C670T p.P224S CAAGTGGGCTGAT . 219.0 24.0 204.0 0.0 . 761 . . Atlas-SNP CIB4 130106 hgsc.bcm.edu hg19 2 26852279 26852279 + Missense_Mutation SNP C C T rs374300070 TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . CIB4 NM_001029881 exon3 c.G185A p.R62Q CTCACCCGCAGAG . 96.0 19.0 77.0 0.0 . 15 . . Atlas-SNP ETAA1 54465 hgsc.bcm.edu hg19 2 67631603 67631603 + Missense_Mutation SNP G G C novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . ETAA1 NM_019002 exon5 c.G1789C p.D597H CAATTAGATAATA . 81.0 11.0 73.0 0.0 . 88 . . Atlas-SNP PMS1 5378 hgsc.bcm.edu hg19 2 190742031 190742031 + Missense_Mutation SNP A A G novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c PMS1,NS,carcinoma,0,1 PMS1 NM_000534 exon13 c.A2668G p.M890V TTACCCATGTACT . 152.0 16.0 111.0 1.0 . 78 . . Atlas-SNP USP4 7375 hgsc.bcm.edu hg19 3 49321560 49321560 + Silent SNP G G A novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . USP4 NM_003363 exon19 c.C2400T p.P800P ACAGTTGGGACAG . 253.0 37.0 202.0 0.0 . 72 . . Atlas-SNP UBA7 7318 hgsc.bcm.edu hg19 3 49849633 49849633 + Missense_Mutation SNP C C A novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . UBA7 NM_003335 exon7 c.G701T p.G234V AGGGACCCATCCT . 196.0 32.0 165.0 0.0 . 64 . . Atlas-SNP DNAH12 201625 hgsc.bcm.edu hg19 3 57391435 57391435 + Missense_Mutation SNP T T C novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . DNAH12 NM_178504 exon41 c.A6464G p.H2155R TTAAAATGGTCCT . 121.0 26.0 90.0 0.0 . 182 . . Atlas-SNP LRRC58 116064 hgsc.bcm.edu hg19 3 120067725 120067725 + Silent SNP G G T novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . LRRC58 NM_001099678 exon1 c.C366A p.L122L CACCTGGAGGCTG . 73.0 14.0 31.0 0.0 . 18 . . Atlas-SNP FAM157A 728262 hgsc.bcm.edu hg19 3 197880164 197880164 + Silent SNP G G A novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . FAM157A NM_001145248 exon2 c.G243A p.Q81Q GCAGCAGCAGCAG . 431.0 48.0 355.0 0.0 . 4 . . Atlas-SNP SLC10A7 84068 hgsc.bcm.edu hg19 4 147179851 147179851 + Missense_Mutation SNP C C T novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . SLC10A7 NM_001029998 exon11 c.G986A p.R329K TTCTGCCTTGATA . 97.0 12.0 64.0 0.0 . 32 . . Atlas-SNP SLC22A5 6584 hgsc.bcm.edu hg19 5 131721132 131721132 + Missense_Mutation SNP C C G novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . SLC22A5 NM_003060 exon4 c.C765G p.D255E CCGAGACTGGCGG . 274.0 78.0 151.0 0.0 . 34 . . Atlas-SNP PCDHB4 56131 hgsc.bcm.edu hg19 5 140503231 140503231 + Silent SNP C C T novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . PCDHB4 NM_018938 exon1 c.C1651T p.L551L CTGGTGCTGGACA . 19.0 4.0 8.0 0.0 . 177 . . Atlas-SNP FLOT1 10211 hgsc.bcm.edu hg19 6 30698721 30698721 + Missense_Mutation SNP G G C novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . FLOT1 NM_005803 exon9 c.C880G p.L294V GCTCCAGCTTGTA . 53.0 6.0 31.0 0.0 . 28 . . Atlas-SNP CUL9 23113 hgsc.bcm.edu hg19 6 43166474 43166474 + Silent SNP C C A novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . CUL9 NM_015089 exon12 c.C2931A p.P977P CAGCCCCGGAGGT . 72.0 12.0 42.0 0.0 . 248 . . Atlas-SNP IMPG1 3617 hgsc.bcm.edu hg19 6 76731919 76731919 + Missense_Mutation SNP G G T novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . IMPG1 NM_001563 exon6 c.C580A p.L194I GCCCAAGTGAGAC . 65.0 12.0 63.0 0.0 . 143 . . Atlas-SNP C6orf170 221322 hgsc.bcm.edu hg19 6 121563360 121563360 + Missense_Mutation SNP G G A novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . C6orf170 NM_152730 exon18 c.C2144T p.A715V TTTTTTGCATATC . 50.0 7.0 43.0 0.0 . 146 . . Atlas-SNP LPA 4018 hgsc.bcm.edu hg19 6 160966524 160966524 + Silent SNP G G A novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . LPA NM_005577 exon34 c.C5346T p.C1782C TGTGTAGCACCAG . 133.0 6.0 107.0 0.0 . 237 . . Atlas-SNP SDK1 221935 hgsc.bcm.edu hg19 7 4277393 4277393 + Missense_Mutation SNP A A G novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . SDK1 NM_152744 exon42 c.A6107G p.K2036R AGAATAAGAAGTA . 287.0 51.0 205.0 0.0 . 361 . . Atlas-SNP VWC2 375567 hgsc.bcm.edu hg19 7 49951654 49951654 + Missense_Mutation SNP C C T novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . VWC2 NM_198570 exon4 c.C851T p.A284V AAACCGCGGTGAT . 143.0 22.0 141.0 0.0 . 30 . . Atlas-SNP MPDZ 8777 hgsc.bcm.edu hg19 9 13126733 13126733 + Silent SNP A A G novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . MPDZ NM_003829 exon33 c.T4503C p.D1501D GAGTGTATCTTCT . 152.0 26.0 91.0 0.0 . 324 . . Atlas-SNP ATRNL1 26033 hgsc.bcm.edu hg19 10 117486766 117486766 + Silent SNP T T C novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . ATRNL1 NM_207303 exon27 c.T3804C p.L1268L ACTGCTTCGAGAA . 37.0 10.0 20.0 0.0 . 219 . . Atlas-SNP DMBT1 1755 hgsc.bcm.edu hg19 10 124335946 124335946 + Silent SNP G G A novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . DMBT1 NM_007329 exon7 c.G315A p.V105V GCTGGTGAATGGA . 120.0 22.0 70.0 0.0 . 677 . . Atlas-SNP DPYSL4 10570 hgsc.bcm.edu hg19 10 134015481 134015481 + Missense_Mutation SNP T T G novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . DPYSL4 NM_006426 exon11 c.T1142G p.V381G AGTTCGTCGCGGT . 120.0 11.0 87.0 0.0 . 91 . . Atlas-SNP GDPD5 81544 hgsc.bcm.edu hg19 11 75150967 75150967 + Silent SNP G G A novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . GDPD5 NM_030792 exon15 c.C1513T p.L505L AGACCAGGTCGGC . 163.0 27.0 107.0 0.0 . 49 . . Atlas-SNP THRSP 7069 hgsc.bcm.edu hg19 11 77774945 77774945 + Silent SNP G G A novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . THRSP NM_003251 exon1 c.G18A p.K6K AACCAAGCGTTAC . 111.0 15.0 89.0 0.0 . 18 . . Atlas-SNP THRSP 7069 hgsc.bcm.edu hg19 11 77774946 77774946 + Missense_Mutation SNP C C G novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c THRSP,colon,carcinoma,-1,1 THRSP NM_003251 exon1 c.C19G p.R7G ACCAAGCGTTACC . 112.0 15.0 89.0 0.0 . 18 . . Atlas-SNP CDON 50937 hgsc.bcm.edu hg19 11 125885319 125885319 + Missense_Mutation SNP G G A novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . CDON NM_016952 exon7 c.C1015T p.P339S GGGCTGGGTTCCC . 272.0 48.0 164.0 0.0 . 137 . . Atlas-SNP ITPR2 3709 hgsc.bcm.edu hg19 12 26816709 26816709 + Missense_Mutation SNP A A C novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . ITPR2 NM_002223 exon15 c.T1622G p.L541R TCCCCCAGATCTT . 94.0 13.0 58.0 0.0 . 270 . . Atlas-SNP ATP5B 506 hgsc.bcm.edu hg19 12 57037684 57037684 + Missense_Mutation SNP T T C novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . ATP5B NM_001686 exon4 c.A544G p.I182V CCAGAATTTCCTG . 179.0 33.0 131.0 0.0 . 48 . . Atlas-SNP TPH2 121278 hgsc.bcm.edu hg19 12 72416191 72416191 + Missense_Mutation SNP A A T novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . TPH2 NM_173353 exon9 c.A1081T p.T361S TTCTTCACAATCG . 58.0 8.0 67.0 0.0 . 81 . . Atlas-SNP SPATA13 221178 hgsc.bcm.edu hg19 13 24861041 24861041 + Missense_Mutation SNP A A G novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . SPATA13 NM_001166271 exon7 c.A2620G p.M874V GAGATCATGGACA . 140.0 27.0 112.0 0.0 . 92 . . Atlas-SNP NUBPL 80224 hgsc.bcm.edu hg19 14 32257020 32257020 + Missense_Mutation SNP A A G novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . NUBPL NM_025152 exon7 c.A548G p.D183G TTGTAGACATGCC . 75.0 13.0 50.0 0.0 . 21 . . Atlas-SNP EXOC5 10640 hgsc.bcm.edu hg19 14 57698355 57698355 + Silent SNP T T C novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . EXOC5 NM_006544 exon11 c.A1017G p.K339K AATGGATTTGATA . 93.0 8.0 72.0 0.0 . 45 . . Atlas-SNP KIF26A 26153 hgsc.bcm.edu hg19 14 104644901 104644901 + Missense_Mutation SNP C C T rs375944046 TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . KIF26A NM_015656 exon13 c.C5125T p.R1709C CGGCGGCGCCTGA . 8.0 6.0 3.0 0.0 . 84 . . Atlas-SNP GJD2 57369 hgsc.bcm.edu hg19 15 35044889 35044889 + Silent SNP G G A novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . GJD2 NM_020660 exon2 c.C756T p.V252V TAGAAAGACAGTC . 276.0 37.0 213.0 0.0 . 49 . . Atlas-SNP CEP152 22995 hgsc.bcm.edu hg19 15 49054803 49054803 + Missense_Mutation SNP C C T novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . CEP152 NM_014985 exon18 c.G2347A p.A783T TCATTGCCTTTAT . 78.0 9.0 58.0 0.0 . 145 . . Atlas-SNP KRT33A 3883 hgsc.bcm.edu hg19 17 39502874 39502874 + Missense_Mutation SNP C C T rs371555388 TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . KRT33A NM_004138 exon6 c.G923A p.S308N TGGGAGCTGTAGC . 87.0 23.0 61.0 0.0 . 53 . . Atlas-SNP KRT36 8689 hgsc.bcm.edu hg19 17 39643887 39643887 + Nonsense_Mutation SNP G G A novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . KRT36 NM_003771 exon4 c.C802T p.Q268X CGTACTGGCATCT . 209.0 27.0 137.0 0.0 . 52 . . Atlas-SNP FECH 2235 hgsc.bcm.edu hg19 18 55226447 55226447 + Missense_Mutation SNP A A T novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . FECH NM_001012515 exon7 c.T752A p.L251Q TGGTCCAGTTCCT . 62.0 11.0 49.0 0.0 . 42 . . Atlas-SNP TUBB4A 10382 hgsc.bcm.edu hg19 19 6495513 6495513 + Missense_Mutation SNP C C T novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . . NM_006087 exon4 c.G997A p.V333M TCTGCACGCTCAG . 76.0 8.0 61.0 0.0 . . . . Atlas-SNP LRRC8E 80131 hgsc.bcm.edu hg19 19 7964686 7964686 + Missense_Mutation SNP C C T novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c LRRC8E,NS,carcinoma,0,1 LRRC8E NM_001268284 exon4 c.C1279T p.P427S ATGCTGCCGGGTC . 55.0 9.0 27.0 0.0 . 67 . . Atlas-SNP SLC5A5 6528 hgsc.bcm.edu hg19 19 18001723 18001723 + Silent SNP G G A rs149937279 TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . SLC5A5 NM_000453 exon14 c.G1680A p.P560P GGCCCCGGGATTG . 78.0 20.0 64.0 0.0 . 67 . G|1.000;C|0.000 Atlas-SNP MLL4 8085 hgsc.bcm.edu hg19 19 36219035 36219035 + Missense_Mutation SNP G G A novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . MLL4 NM_014727 exon19 c.G4534A p.D1512N GCCCACGACCCCA . 112.0 16.0 102.0 0.0 . 229 . . Atlas-SNP PPP5C 5536 hgsc.bcm.edu hg19 19 46857241 46857241 + Missense_Mutation SNP G G C novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . PPP5C NM_006247 exon2 c.G358C p.E120Q GACTACGAGACGG . 128.0 24.0 62.0 0.0 . 44 . . Atlas-SNP ZBTB45 84878 hgsc.bcm.edu hg19 19 59029036 59029036 + Missense_Mutation SNP G G A novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . ZBTB45 NM_032792 exon2 c.C5T p.A2V GCAGCCGCCATCT . 127.0 6.0 94.0 0.0 . 37 . . Atlas-SNP ACSS2 55902 hgsc.bcm.edu hg19 20 33464506 33464506 + Missense_Mutation SNP G G A novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . ACSS2 NM_001076552 exon1 c.G58A p.A20T GAGGAAGCTGGAG . 9.0 6.0 1.0 0.0 . 75 . . Atlas-SNP EPB41L1 2036 hgsc.bcm.edu hg19 20 34797717 34797717 + Missense_Mutation SNP G G T rs140677677 by1000genomes;alternate_allele TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c EPB41L1_ENST00000344237,NS,carcinoma,0,2 EPB41L1 NM_001258329 exon16 c.G1976T p.R659L TCTCCCGGGATCT . 105.0 26.0 82.0 1.0 . 111 . G|1.000;A|0.000 Atlas-SNP ITSN1 6453 hgsc.bcm.edu hg19 21 35183471 35183471 + Missense_Mutation SNP G G T novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . ITSN1 NM_001001132 exon21 c.G2512T p.V838L TTGGCAGTAACCT . 179.0 36.0 146.0 0.0 . 166 . . Atlas-SNP AHNAK 79026 hgsc.bcm.edu hg19 11 62286109 62286109 + Frame_Shift_Del DEL G G - novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . AHNAK NM_001620 exon5 c.15781delT p.S5261fs . . 87.0 12.0 101.0 0.0 . 532 . . Atlas-Indel,Pindel CIRBP 1153 hgsc.bcm.edu hg19 19 1271998 1271998 + Frame_Shift_Del DEL C C - novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . CIRBP NM_001280 exon6 c.449delG p.G150fs . . 449.0 86.0 388.0 0.0 . 19 . . Atlas-Indel,Pindel DSPP 1834 hgsc.bcm.edu hg19 4 88537069 88537070 + In_Frame_Ins INS - - GATAGCAGC rs200486992 alternate_allele TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . DSPP NM_014208 exon5 c.3255_3256insGATAGCAGC p.S1085delinsSDSS . . 144.0 78.0 128.0 0.0 . 174 . . Atlas-INDEL TIPARP 25976 hgsc.bcm.edu hg19 3 156422743 156422766 + In_Frame_Del DEL CAGTCATGGCATGAGAAGGCCCCC CAGTCATGGCATGAGAAGGCCCCC - novel TCGA-HP-A5MZ-01A-21D-A27I-10 TCGA-HP-A5MZ-10A-01D-A27I-10 CAGTCATGGCATGAGAAGGCCCCC CAGTCATGGCATGAGAAGGCCCCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36213e4-c057-46f5-ada5-f1f921855bb4 09ea881b-e60d-4cbe-9c35-d556da8bf86c . TIPARP NM_001184717 exon6 c.1796_1819del p.599_607del . . 151.0 14.0 117.0 0.0 . 50 . . Pindel