Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
PRAMEF4	400735	hgsc.bcm.edu	hg19	1	12942173	12942173	+	Missense_Mutation	SNP	C	C	G	rs71232900		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	PRAMEF4,NS,carcinoma,0,1	PRAMEF4	NM_001009611	exon3	c.G377C	p.C126S	AGGAAGCACCCAT	.	45.0	3.0	22.0	1.0	.	62	.	C|0.500;G|0.500	Atlas-SNP
ABCA4	24	hgsc.bcm.edu	hg19	1	94564351	94564351	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ABCA4	NM_000350	exon6	c.T767C	p.V256A	CTTACCACACGGA	.	55.0	21.0	56.0	0.0	.	275	.	.	Atlas-SNP
CYP1B1	1545	hgsc.bcm.edu	hg19	2	38301745	38301745	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	CYP1B1	NM_000104	exon2	c.C787T	p.Q263X	TGAGCTGCTCGAA	.	194.0	11.0	204.0	0.0	.	39	.	.	Atlas-SNP
BAZ2B	29994	hgsc.bcm.edu	hg19	2	160206490	160206490	+	Missense_Mutation	SNP	G	G	A	rs372658436	alternate_allele	TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	BAZ2B	NM_013450	exon28	c.C4592T	p.T1531I	GAACCAGTATTAA	.	134.0	11.0	135.0	0.0	.	196	.	.	Atlas-SNP
CHST13	166012	hgsc.bcm.edu	hg19	3	126260674	126260674	+	Silent	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	CHST13	NM_152889	exon3	c.G279A	p.P93P	ACAGCCGGAGGAC	.	49.0	15.0	50.0	0.0	.	21	.	.	Atlas-SNP
NOA1	84273	hgsc.bcm.edu	hg19	4	57842963	57842963	+	Silent	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	.	NM_032313	exon1	c.G789A	p.R263R	CCGCAGCCTCTGC	.	64.0	10.0	84.0	0.0	.	.	.	.	Atlas-SNP
IRX2	153572	hgsc.bcm.edu	hg19	5	2751518	2751518	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	IRX2	NM_001134222	exon1	c.C10A	p.P4T	CCTGCGGGTAGGA	.	23.0	10.0	32.0	0.0	.	60	.	.	Atlas-SNP
C5orf60	285679	hgsc.bcm.edu	hg19	5	179069453	179069453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	C5orf60	NM_001142306	exon5	c.C721T	p.R241C	GAAAGCGGGACCC	.	55.0	27.0	70.0	0.0	.	24	.	.	Atlas-SNP
RAPGEF5	9771	hgsc.bcm.edu	hg19	7	22347988	22347988	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	RAPGEF5	NM_012294	exon5	c.T191A	p.L64H	GGAATGAGAGGCA	.	64.0	19.0	61.0	0.0	.	96	.	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	hg19	7	100683043	100683043	+	Silent	SNP	C	C	T	rs371681290		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	MUC17,NS,carcinoma,0,1	MUC17	NM_001040105	exon3	c.C8346T	p.V2782V	ACCTGTCACCACT	.	74.0	11.0	84.0	2.0	.	804	.	.	Atlas-SNP
ARHGEF10	9639	hgsc.bcm.edu	hg19	8	1871942	1871942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ARHGEF10	NM_014629	exon21	c.C2390T	p.S797F	GCAGATCTGGGCG	.	110.0	10.0	137.0	0.0	.	255	.	.	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	hg19	11	1085941	1085941	+	Silent	SNP	G	G	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	MUC2_ENST00000441003,NS,carcinoma,0,2	MUC2	NM_002457	exon22	c.G2781T	p.T927T	GAGGACGGAGCTG	.	27.0	3.0	25.0	0.0	.	614	.	.	Atlas-SNP
RRM1	6240	hgsc.bcm.edu	hg19	11	4148364	4148364	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	RRM1	NM_001033	exon14	c.G1570T	p.A524S	GCAGAAGCCCAGT	.	91.0	4.0	102.0	0.0	.	31	.	.	Atlas-SNP
MRGPRX3	117195	hgsc.bcm.edu	hg19	11	18159634	18159634	+	Silent	SNP	G	G	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	MRGPRX3	NM_054031	exon3	c.G885T	p.L295L	GGCTCTGCAGGAC	.	53.0	19.0	51.0	0.0	.	59	.	.	Atlas-SNP
OR6M1	390261	hgsc.bcm.edu	hg19	11	123676932	123676932	+	Silent	SNP	G	G	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	OR6M1	NM_001005325	exon1	c.C126A	p.T42T	GATGATGGTGATG	.	100.0	15.0	129.0	0.0	.	60	.	.	Atlas-SNP
HEPACAM	220296	hgsc.bcm.edu	hg19	11	124794662	124794662	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	HEPACAM	NM_152722	exon2	c.C389G	p.T130S	GTGAAGGTGTCGT	.	34.0	13.0	64.0	0.0	.	64	.	.	Atlas-SNP
NCKAP5L	57701	hgsc.bcm.edu	hg19	12	50186524	50186524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	NCKAP5L	NM_001037806	exon11	c.C3586T	p.P1196S	AGGCTGGCATGCT	.	96.0	29.0	57.0	0.0	.	142	.	.	Atlas-SNP
OS9	10956	hgsc.bcm.edu	hg19	12	58087958	58087958	+	Missense_Mutation	SNP	C	C	T	rs150848860	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	OS9	NM_001261423	exon1	c.C14T	p.T5M	CGGAAACGCTGCT	.	124.0	32.0	80.0	0.0	.	55	.	C|0.997;G|0.003	Atlas-SNP
FANCM	57697	hgsc.bcm.edu	hg19	14	45658377	45658377	+	Missense_Mutation	SNP	G	G	A	rs371629950		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	FANCM	NM_020937	exon20	c.G5152A	p.V1718M	TCCAAGGTGCGTT	.	176.0	77.0	174.0	0.0	.	225	.	.	Atlas-SNP
TMEM30B	161291	hgsc.bcm.edu	hg19	14	61747549	61747549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	TMEM30B	NM_001017970	exon1	c.G317A	p.G106D	ACTGGGCCCTGGA	.	25.0	9.0	14.0	0.0	.	13	.	.	Atlas-SNP
DLST	1743	hgsc.bcm.edu	hg19	14	75359658	75359658	+	Silent	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	DLST	NM_001933	exon8	c.C564T	p.P188P	GGTGCCCTCGCCC	.	78.0	8.0	62.0	0.0	.	42	.	.	Atlas-SNP
IL16	3603	hgsc.bcm.edu	hg19	15	81593848	81593848	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	IL16	NM_001172128	exon15	c.T3313G	p.L1105V	GCAACATTAAAGG	.	63.0	19.0	56.0	0.0	.	254	.	.	Atlas-SNP
ITGAD	3681	hgsc.bcm.edu	hg19	16	31414896	31414896	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ITGAD	NM_005353	exon7	c.C634T	p.Q212X	AGCCAGCAGAGCC	.	76.0	27.0	62.0	0.0	.	154	.	.	Atlas-SNP
ANKRD13B	124930	hgsc.bcm.edu	hg19	17	27940598	27940598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ANKRD13B	NM_152345	exon15	c.T1879C	p.X627Q	GAGCAGTAGCGCC	.	20.0	8.0	24.0	0.0	.	39	.	.	Atlas-SNP
SLC16A6	9120	hgsc.bcm.edu	hg19	17	66268836	66268836	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	SLC16A6	NM_001174166	exon5	c.T449C	p.I150T	GTGACTATGGAAC	.	135.0	32.0	107.0	0.0	.	56	.	.	Atlas-SNP
ZNF728	388523	hgsc.bcm.edu	hg19	19	23170207	23170207	+	Splice_Site	SNP	T	T	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	.	NM_001267716	exon4	c.131-2A>T	.	AATACCTGTTTTA	.	31.0	12.0	56.0	0.0	.	.	.	.	Atlas-SNP
WDR87	83889	hgsc.bcm.edu	hg19	19	38385769	38385769	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	WDR87	NM_031951	exon4	c.A457T	p.M153L	CTGGCATGGAGAC	.	45.0	22.0	65.0	0.0	.	191	.	.	Atlas-SNP
STRN4	29888	hgsc.bcm.edu	hg19	19	47231256	47231256	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	STRN4	NM_001039877	exon8	c.C1048G	p.R350G	TGACCCGACGGCT	.	51.0	13.0	50.0	0.0	.	33	.	.	Atlas-SNP
LILRB1	10859	hgsc.bcm.edu	hg19	19	55148029	55148029	+	Missense_Mutation	SNP	C	C	T	rs370268778	alternate_allele	TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	LILRB1,NS,carcinoma,0,1	LILRB1	NM_001081637	exon14	c.C1738T	p.P580S	TCTCCTCCTTCCC	.	122.0	10.0	134.0	0.0	.	140	.	.	Atlas-SNP
ADRA1D	146	hgsc.bcm.edu	hg19	20	4228867	4228867	+	Nonsense_Mutation	SNP	G	G	T	rs140080149	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ADRA1D	NM_000678	exon1	c.C738A	p.C246X	GATACCGCAGAAG	.	86.0	35.0	97.0	0.0	.	36	.	G|0.996;A|0.004	Atlas-SNP
SLC9A8	23315	hgsc.bcm.edu	hg19	20	48497559	48497559	+	Silent	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	SLC9A8	NM_001260491	exon13	c.C1305T	p.I435I	GTTCATCATGTGG	.	113.0	34.0	115.0	0.0	.	63	.	.	Atlas-SNP
ZNF512B	57473	hgsc.bcm.edu	hg19	20	62594086	62594086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ZNF512B	NM_020713	exon13	c.G2017A	p.G673S	CCACACCCAGCGG	.	69.0	21.0	77.0	0.0	.	72	.	.	Atlas-SNP
EIF4ENIF1	56478	hgsc.bcm.edu	hg19	22	31845450	31845450	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	EIF4ENIF1	NM_019843	exon12	c.T1652G	p.L551W	GGCTCCAAGCTCC	.	72.0	24.0	77.0	0.0	.	80	.	.	Atlas-SNP
EP300	2033	hgsc.bcm.edu	hg19	22	41574846	41574846	+	Silent	SNP	T	T	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	EP300	NM_001429	exon31	c.T7131C	p.A2377A	GCTTGCTAGCAAT	.	63.0	22.0	87.0	0.0	.	367	.	.	Atlas-SNP
SHROOM4	57477	hgsc.bcm.edu	hg19	X	50378093	50378093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	SHROOM4	NM_020717	exon4	c.G980A	p.C327Y	CTGAGGCAACAGA	.	101.0	32.0	76.0	0.0	.	171	.	.	Atlas-SNP
MAGEE1	57692	hgsc.bcm.edu	hg19	X	75648383	75648383	+	Silent	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	MAGEE1	NM_020932	exon1	c.G60A	p.A20A	TACTGCGCACAAC	.	138.0	15.0	152.0	0.0	.	236	.	.	Atlas-SNP