Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm IPP 3652 hgsc.bcm.edu hg19 1 46211836 46211836 + Missense_Mutation SNP A A G novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . IPP NM_001145349 exon2 c.T248C p.I83T GCTTCAATTCCTA . 144.0 54.0 126.0 0.0 . 66 . . Atlas-SNP GLIS1 148979 hgsc.bcm.edu hg19 1 54060500 54060500 + Missense_Mutation SNP G G T novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . GLIS1 NM_147193 exon3 c.C76A p.L26I CCGGGAGGTCCAG . 119.0 32.0 98.0 0.0 . 52 . . Atlas-SNP AKNAD1 254268 hgsc.bcm.edu hg19 1 109394989 109394989 + Missense_Mutation SNP T T G novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . AKNAD1 NM_152763 exon2 c.A298C p.N100H CTTCATTTGCTGG . 97.0 33.0 80.0 0.0 . 83 . . Atlas-SNP ZNF687 57592 hgsc.bcm.edu hg19 1 151259083 151259083 + Missense_Mutation SNP G G T novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 ZNF687,colon,carcinoma,0,1 ZNF687 NM_020832 exon2 c.G316T p.G106W GGAGACGGGGCCC . 151.0 19.0 68.0 0.0 . 94 . . Atlas-SNP FLG2 388698 hgsc.bcm.edu hg19 1 152324696 152324696 + Nonsense_Mutation SNP C C A novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . FLG2 NM_001014342 exon3 c.G5566T p.G1856X AATGTCCACTGGT . 239.0 40.0 108.0 0.0 . 431 . . Atlas-SNP CREB3L4 148327 hgsc.bcm.edu hg19 1 153941033 153941033 + Missense_Mutation SNP C C G novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . CREB3L4 NM_001255980 exon2 c.C32G p.A11G TGGACGCGTGGCT . 187.0 78.0 96.0 0.0 . 36 . . Atlas-SNP NES 10763 hgsc.bcm.edu hg19 1 156639400 156639400 + Missense_Mutation SNP C C T novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . NES NM_006617 exon4 c.G4580A p.G1527D CCTGGGCCTGCAT . 179.0 41.0 93.0 0.0 . 196 . . Atlas-SNP PEAR1 375033 hgsc.bcm.edu hg19 1 156875181 156875181 + Missense_Mutation SNP G G C novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . PEAR1 NM_001080471 exon4 c.G272C p.C91S AGTGCTGCCATGG . 81.0 20.0 27.0 0.0 . 118 . . Atlas-SNP OR6P1 128366 hgsc.bcm.edu hg19 1 158532696 158532696 + Silent SNP T T A novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . OR6P1 NM_001160325 exon1 c.A699T p.G233G GTGGCGTCCCCTG . 222.0 49.0 115.0 0.0 . 47 . . Atlas-SNP TSTD1 100131187 hgsc.bcm.edu hg19 1 161008344 161008344 + Missense_Mutation SNP G G A novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . TSTD1 NM_001113207 exon2 c.C130T p.P44S TACCCGGGATGTT . 178.0 74.0 86.0 0.0 . 12 . . Atlas-SNP MPC2 25874 hgsc.bcm.edu hg19 1 167905052 167905052 + Missense_Mutation SNP G G A novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . . NM_001143674 exon2 c.C28T p.R10W TGGCCCGCAGGCC . 253.0 47.0 141.0 0.0 . . . . Atlas-SNP SLC19A2 10560 hgsc.bcm.edu hg19 1 169454948 169454948 + Silent SNP G G T novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . SLC19A2 NM_006996 exon1 c.C57A p.L19L CCGCAGGAGCACA . 183.0 62.0 121.0 0.0 . 35 . . Atlas-SNP SCYL3 57147 hgsc.bcm.edu hg19 1 169833605 169833605 + Missense_Mutation SNP G G A novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . SCYL3 NM_020423 exon9 c.C860T p.A287V CTTGAAGCTATCA . 513.0 203.0 293.0 1.0 . 116 . . Atlas-SNP TDRD5 163589 hgsc.bcm.edu hg19 1 179631239 179631239 + Missense_Mutation SNP G G A novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . TDRD5 NM_001199085 exon15 c.G2323A p.D775N TTTTAGGATGAGA . 139.0 21.0 81.0 0.0 . 149 . . Atlas-SNP HMCN1 83872 hgsc.bcm.edu hg19 1 186088414 186088414 + Silent SNP G G A novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . HMCN1 NM_031935 exon78 c.G11940A p.V3980V ACACGTGACCCTT . 386.0 64.0 222.0 0.0 . 797 . . Atlas-SNP TTC13 79573 hgsc.bcm.edu hg19 1 231047225 231047225 + Missense_Mutation SNP C C G novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . TTC13 NM_024525 exon20 c.G2300C p.R767P GATCCTCGAGAGA . 1011.0 101.0 525.0 0.0 . 74 . . Atlas-SNP SNTG2 54221 hgsc.bcm.edu hg19 2 1241734 1241734 + Missense_Mutation SNP G G T novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . SNTG2 NM_018968 exon10 c.G794T p.G265V AGGATGGCACCGA . 36.0 18.0 51.0 0.0 . 125 . . Atlas-SNP BIRC6 57448 hgsc.bcm.edu hg19 2 32703821 32703821 + Missense_Mutation SNP A A G novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . BIRC6 NM_016252 exon36 c.A7187G p.D2396G GAGGAGATATATC . 100.0 11.0 115.0 0.0 . 838 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179528600 179528600 + Missense_Mutation SNP C C T novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . TTN NM_001267550 exon170 c.G36394A p.E12132K TCTCTTCGCGGAT . 101.0 50.0 144.0 0.0 . 18412 . . Atlas-SNP FSIP2 401024 hgsc.bcm.edu hg19 2 186670171 186670171 + Missense_Mutation SNP A A G novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . FSIP2 NM_173651 exon17 c.A16405G p.M5469V ATAGGGATGATTG . 247.0 109.0 338.0 0.0 . 251 . . Atlas-SNP PLCL1 5334 hgsc.bcm.edu hg19 2 198950089 198950089 + Silent SNP T T C novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . PLCL1 NM_006226 exon2 c.T1848C p.S616S ATTTAGTGAAACA . 71.0 5.0 122.0 0.0 . 358 . . Atlas-SNP NBEAL1 65065 hgsc.bcm.edu hg19 2 204009854 204009854 + Missense_Mutation SNP G G A rs369975893 TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . NBEAL1 NM_001114132 exon32 c.G5188A p.E1730K GACCGGGAAGGAG . 115.0 7.0 135.0 0.0 . 266 . . Atlas-SNP C3orf20 84077 hgsc.bcm.edu hg19 3 14724699 14724699 + Missense_Mutation SNP T T C novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . C3orf20 NM_032137 exon3 c.T479C p.M160T AGTCTATGTCGGG . 101.0 36.0 75.0 0.0 . 109 . . Atlas-SNP SGOL1 151648 hgsc.bcm.edu hg19 3 20225381 20225381 + Missense_Mutation SNP T T C novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . SGOL1 NM_001199253 exon2 c.A139G p.I47V TACTGATTATTTG . 99.0 34.0 105.0 0.0 . 55 . . Atlas-SNP MYRIP 25924 hgsc.bcm.edu hg19 3 40251524 40251524 + Missense_Mutation SNP C C A novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . MYRIP NM_015460 exon11 c.C1845A p.N615K TGAGAACCAGAAG . 345.0 114.0 284.0 0.0 . 98 . . Atlas-SNP TRAK1 22906 hgsc.bcm.edu hg19 3 42236385 42236385 + Missense_Mutation SNP G G C novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . TRAK1 NM_001265608 exon10 c.G1065C p.M355I AACCATGCCCAAT . 113.0 31.0 91.0 0.0 . 188 . . Atlas-SNP HYAL1 3373 hgsc.bcm.edu hg19 3 50339584 50339584 + Missense_Mutation SNP C C G novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . HYAL1 NM_033159 exon2 c.G804C p.E268D GAATGCCTCGGCC . 367.0 116.0 293.0 0.0 . 28 . . Atlas-SNP TRPC1 7220 hgsc.bcm.edu hg19 3 142467157 142467157 + Missense_Mutation SNP G G A novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . TRPC1 NM_001251845 exon4 c.G487A p.V163I GCACCTGTCATTT . 243.0 78.0 212.0 0.0 . 82 . . Atlas-SNP MSX1 4487 hgsc.bcm.edu hg19 4 4861842 4861842 + Silent SNP G G A novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . MSX1 NM_002448 exon1 c.G216A p.K72K CAGGAAGCCGGGG . 1014.0 281.0 805.0 0.0 . 19 . . Atlas-SNP BRD9 65980 hgsc.bcm.edu hg19 5 891776 891776 + Missense_Mutation SNP A A C novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . BRD9 NM_023924 exon2 c.T246G p.D82E TTCCTCATCGTCC . 94.0 34.0 43.0 0.0 . 113 . . Atlas-SNP HIST1H3C 8352 hgsc.bcm.edu hg19 6 26045843 26045843 + Nonsense_Mutation SNP C C T novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . HIST1H3C NM_003531 exon1 c.C205T p.Q69X CCGTTCCAGCGCC . 200.0 52.0 117.0 0.0 . 34 . . Atlas-SNP SYNGAP1 8831 hgsc.bcm.edu hg19 6 33405540 33405540 + Silent SNP G G T novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . SYNGAP1 NM_006772 exon8 c.G858T p.L286L CTGCCTGGATGAC . 130.0 35.0 105.0 0.0 . 202 . . Atlas-SNP RIMS1 22999 hgsc.bcm.edu hg19 6 73001644 73001644 + Silent SNP C C A novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . RIMS1 NM_014989 exon26 c.C3745A p.R1249R ATGCACCGACAGA . 192.0 47.0 184.0 0.0 . 278 . . Atlas-SNP FHL5 9457 hgsc.bcm.edu hg19 6 97053798 97053798 + Missense_Mutation SNP A A G novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . FHL5 NM_020482 exon5 c.A355G p.K119E GAATTTAAGGGAA . 147.0 29.0 149.0 0.0 . 73 . . Atlas-SNP ARMC2 84071 hgsc.bcm.edu hg19 6 109232114 109232114 + Missense_Mutation SNP A A G novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . ARMC2 NM_032131 exon9 c.A1036G p.R346G GTGAGTAGAAAGA . 63.0 18.0 67.0 0.0 . 56 . . Atlas-SNP SERAC1 84947 hgsc.bcm.edu hg19 6 158535993 158535993 + Silent SNP G G A novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . SERAC1 NM_032861 exon15 c.C1512T p.V504V CTTTTTGACAAGA . 116.0 5.0 95.0 0.0 . 31 . . Atlas-SNP SUN1 23353 hgsc.bcm.edu hg19 7 878543 878543 + Silent SNP A A C novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . SUN1 NM_001171945 exon4 c.A249C p.A83A GACAGCATGCACC . 61.0 12.0 61.0 0.0 . 157 . . Atlas-SNP SRPK2 6733 hgsc.bcm.edu hg19 7 104767483 104767483 + Silent SNP A A G novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . SRPK2 NM_182692 exon14 c.T1779C p.Y593Y AAACAAATAATCT . 136.0 48.0 125.0 0.0 . 76 . . Atlas-SNP DGKI 9162 hgsc.bcm.edu hg19 7 137170153 137170153 + Silent SNP T T A novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . DGKI NM_004717 exon24 c.A2394T p.S798S AGAAACTGACTGT . 339.0 110.0 258.0 0.0 . 335 . . Atlas-SNP WEE2 494551 hgsc.bcm.edu hg19 7 141416059 141416059 + Missense_Mutation SNP C C T novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . WEE2 NM_001105558 exon3 c.C577T p.P193S GGGCTGCCTGCCA . 37.0 13.0 34.0 0.0 . 59 . . Atlas-SNP PTPRN2 5799 hgsc.bcm.edu hg19 7 157959681 157959681 + Silent SNP G G C novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . PTPRN2 NM_130843 exon6 c.C852G p.A284A CTGGGGGGCGGCT . 126.0 37.0 104.0 0.0 . 243 . . Atlas-SNP ESYT2 57488 hgsc.bcm.edu hg19 7 158540904 158540904 + Missense_Mutation SNP C C T novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . ESYT2 NM_020728 exon15 c.G1706A p.R569H TCCTGGCGCTTGG . 152.0 10.0 121.0 0.0 . 70 . . Atlas-SNP TLN1 7094 hgsc.bcm.edu hg19 9 35703773 35703773 + Missense_Mutation SNP T T C novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . TLN1 NM_006289 exon47 c.A6356G p.K2119R CCAACCTTGGCAG . 51.0 15.0 62.0 0.0 . 185 . . Atlas-SNP CCDC180 0 hgsc.bcm.edu hg19 9 100117288 100117288 + Missense_Mutation SNP C C G novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . . NM_020893 exon24 c.C3394G p.Q1132E AAGTGCCAGGTAG . 74.0 31.0 48.0 0.0 . . . . Atlas-SNP FOXE1 2304 hgsc.bcm.edu hg19 9 100616728 100616728 + Missense_Mutation SNP G G A novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . FOXE1 NM_004473 exon1 c.G532A p.A178T GCCGCCGCCGCCA . 194.0 10.0 194.0 0.0 . 19 . . Atlas-SNP PAEP 5047 hgsc.bcm.edu hg19 9 138457313 138457313 + Missense_Mutation SNP C C A rs373981009 TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . PAEP NM_002571 exon5 c.C479A p.P160H TCAGGCCCCTGCC . 91.0 29.0 79.0 0.0 . 16 . . Atlas-SNP CUBN 8029 hgsc.bcm.edu hg19 10 16955931 16955931 + Missense_Mutation SNP G G C novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . CUBN NM_001081 exon48 c.C7412G p.P2471R GGATTTGGGTTCG . 50.0 10.0 54.0 0.0 . 515 . . Atlas-SNP CUBN 8029 hgsc.bcm.edu hg19 10 17142085 17142085 + Missense_Mutation SNP T T C novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . CUBN NM_001081 exon14 c.A1684G p.N562D GAGCATTGTCACT . 243.0 80.0 235.0 0.0 . 515 . . Atlas-SNP SLC16A9 220963 hgsc.bcm.edu hg19 10 61412663 61412663 + Missense_Mutation SNP A A T novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 SLC16A9,larynx,carcinoma,0,1 SLC16A9 NM_194298 exon6 c.T1397A p.F466Y CCACTAAAATAAA . 356.0 115.0 265.0 0.0 . 58 . . Atlas-SNP LRIT1 26103 hgsc.bcm.edu hg19 10 85997354 85997354 + Missense_Mutation SNP T T C novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . LRIT1 NM_015613 exon2 c.A211G p.I71V TGCGTATGGCCGT . 84.0 15.0 58.0 0.0 . 73 . . Atlas-SNP GRID1 2894 hgsc.bcm.edu hg19 10 87373360 87373360 + Missense_Mutation SNP T T C novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . GRID1 NM_017551 exon15 c.A2405G p.Q802R CACTTCTGCTTCA . 193.0 61.0 122.0 0.0 . 204 . . Atlas-SNP CHUK 1147 hgsc.bcm.edu hg19 10 101950685 101950685 + Missense_Mutation SNP G G T novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . CHUK NM_001278 exon20 c.C2149A p.L717I GGCCAAGGCAGTT . 127.0 23.0 118.0 0.0 . 71 . . Atlas-SNP KRTAP5-4 387267 hgsc.bcm.edu hg19 11 1642908 1642908 + Missense_Mutation SNP C C G novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . KRTAP5-4 NM_001012709 exon1 c.G416C p.C139S CAGCTGCACTGGG . 144.0 6.0 164.0 0.0 . 78 . . Atlas-SNP PCNXL3 399909 hgsc.bcm.edu hg19 11 65404386 65404386 + Missense_Mutation SNP G G T novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . PCNXL3 NM_032223 exon35 c.G6042T p.W2014C CGACTGGCCTGCC . 53.0 21.0 61.0 0.0 . 140 . . Atlas-SNP PLEKHA5 54477 hgsc.bcm.edu hg19 12 19501413 19501413 + Silent SNP A A G novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . PLEKHA5 NM_001256470 exon25 c.A2979G p.K993K AGAAAAATCAGAA . 123.0 52.0 158.0 0.0 . 198 . . Atlas-SNP CALCOCO1 57658 hgsc.bcm.edu hg19 12 54118961 54118961 + Silent SNP C C A novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . CALCOCO1 NM_020898 exon2 c.G66T p.R22R GTAGGTCCGGGCT . 226.0 40.0 170.0 0.0 . 50 . . Atlas-SNP AGAP2 116986 hgsc.bcm.edu hg19 12 58131025 58131025 + Silent SNP G G T novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . AGAP2 NM_001122772 exon1 c.C1005A p.G335G TGCTCGGCCCCCC . 155.0 50.0 107.0 0.0 . 167 . . Atlas-SNP AGAP2 116986 hgsc.bcm.edu hg19 12 58131661 58131661 + Silent SNP G G T novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . AGAP2 NM_001122772 exon1 c.C369A p.L123L CCCGGAGAGCGGG . 33.0 5.0 23.0 0.0 . 167 . . Atlas-SNP ANKS1B 56899 hgsc.bcm.edu hg19 12 99145188 99145188 + Missense_Mutation SNP T T C novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 ANKS1B_ENST00000549493,lower_third,carcinoma,0,2 ANKS1B NM_152788 exon25 c.A3617G p.E1206G TTGTTTTCAAAGC . 187.0 43.0 155.0 0.0 . 180 . . Atlas-SNP RFX4 5992 hgsc.bcm.edu hg19 12 107103177 107103177 + Silent SNP C C T novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . RFX4 NM_001206691 exon9 c.C930T p.L310L CGACCTCCCAGAA . 140.0 43.0 134.0 0.0 . 218 . . Atlas-SNP OXGR1 27199 hgsc.bcm.edu hg19 13 97639005 97639005 + Missense_Mutation SNP G G A novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . OXGR1 NM_080818 exon4 c.C1009T p.P337S TTCAAGGGTTGTT . 22.0 12.0 33.0 0.0 . 46 . . Atlas-SNP AJUBA 84962 hgsc.bcm.edu hg19 14 23450783 23450783 + Nonsense_Mutation SNP A A C novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . . NM_032876 exon1 c.T693G p.Y231X CGGGGGATACGAG . 57.0 26.0 64.0 0.0 . . . . Atlas-SNP TMEM63C 57156 hgsc.bcm.edu hg19 14 77685213 77685213 + Silent SNP G G T novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . TMEM63C NM_020431 exon3 c.G57T p.V19V GACAGTGGATGAA . 88.0 45.0 79.0 0.0 . 77 . . Atlas-SNP CCNDBP1 23582 hgsc.bcm.edu hg19 15 43477752 43477752 + Missense_Mutation SNP A A C novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . CCNDBP1 NM_012142 exon1 c.A56C p.E19A CTTTGGAGCAGCT . 71.0 36.0 94.0 0.0 . 22 . . Atlas-SNP RASGRF1 5923 hgsc.bcm.edu hg19 15 79296322 79296322 + Silent SNP G G A rs147952942 TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . RASGRF1 NM_002891 exon16 c.C2319T p.A773A GAGGGCGGCCAGG . 69.0 41.0 74.0 0.0 . 168 . G|1.000;A|0.000 Atlas-SNP TSC2 7249 hgsc.bcm.edu hg19 16 2124225 2124225 + Nonsense_Mutation SNP C C T rs45517233 TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . TSC2 NM_001114382 exon22 c.C2380T p.Q794X CTGGAGCAGGGCC . 34.0 15.0 26.0 0.0 . 364 . . Atlas-SNP HEATR3 55027 hgsc.bcm.edu hg19 16 50120257 50120257 + Missense_Mutation SNP A A G novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . HEATR3 NM_182922 exon11 c.A1505G p.Q502R TTTCTCAACCAGG . 47.0 21.0 64.0 0.0 . 59 . . Atlas-SNP RFWD3 55159 hgsc.bcm.edu hg19 16 74660446 74660446 + Missense_Mutation SNP T T C novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . RFWD3 NM_018124 exon12 c.A1976G p.N659S GTGTGATTTTTAT . 90.0 53.0 98.0 0.0 . 49 . . Atlas-SNP GP1BA 2811 hgsc.bcm.edu hg19 17 4837682 4837682 + Missense_Mutation SNP C C G novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . GP1BA NM_000173 exon2 c.C1783G p.L595V GCCTGGCTGCTCT . 51.0 25.0 66.0 0.0 . 53 . . Atlas-SNP RNF112 7732 hgsc.bcm.edu hg19 17 19316310 19316310 + Silent SNP C C A novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . RNF112 NM_007148 exon4 c.C441A p.G147G TGGGGGCCTCATC . 157.0 57.0 128.0 0.0 . 37 . . Atlas-SNP LRRC37A2 474170 hgsc.bcm.edu hg19 17 44630766 44630766 + Missense_Mutation SNP A A T novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . LRRC37A2 NM_001006607 exon11 c.A4810T p.I1604L AAACAGATATGTT . 696.0 192.0 605.0 1.0 . 37 . . Atlas-SNP SDK2 54549 hgsc.bcm.edu hg19 17 71503638 71503638 + Missense_Mutation SNP G G T novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . SDK2 NM_001144952 exon2 c.C163A p.P55T CCAGTGGCCAGCT . 67.0 16.0 70.0 0.0 . 219 . . Atlas-SNP SUMO2 6613 hgsc.bcm.edu hg19 17 73177179 73177179 + Silent SNP T T C novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . SUMO2 NM_006937 exon2 c.A126G p.K42K CATTAGTTTACTA . 539.0 121.0 415.0 0.0 . 4 . . Atlas-SNP TMC8 147138 hgsc.bcm.edu hg19 17 76129505 76129505 + Missense_Mutation SNP C C A novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . TMC8 NM_152468 exon6 c.C550A p.L184I ACCTATCTCTTCT . 68.0 21.0 72.0 0.0 . 44 . . Atlas-SNP EPB41L3 23136 hgsc.bcm.edu hg19 18 5434095 5434095 + Missense_Mutation SNP C C G novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . EPB41L3 NM_012307 exon7 c.G631C p.D211H TGTCATCTCGCAA . 150.0 7.0 163.0 0.0 . 222 . . Atlas-SNP ANKRD29 147463 hgsc.bcm.edu hg19 18 21197723 21197723 + Missense_Mutation SNP T T A novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . ANKRD29 NM_173505 exon8 c.A696T p.K232N TGAGAATTTAAGC . 138.0 34.0 92.0 0.0 . 24 . . Atlas-SNP DSEL 92126 hgsc.bcm.edu hg19 18 65179555 65179555 + Missense_Mutation SNP A A G novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . DSEL NM_032160 exon2 c.T2321C p.I774T AAAATAATCCTAT . 114.0 39.0 95.0 0.0 . 196 . . Atlas-SNP THAP8 199745 hgsc.bcm.edu hg19 19 36530605 36530605 + Nonsense_Mutation SNP G G A rs201068048 bycluster TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . THAP8 NM_152658 exon3 c.C292T p.R98X TGCTTCGGGTCCT . 122.0 40.0 88.0 0.0 . 11 . . Atlas-SNP SYMPK 8189 hgsc.bcm.edu hg19 19 46332347 46332347 + Missense_Mutation SNP C C A novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 SYMPK,NS,carcinoma,0,1 SYMPK NM_004819 exon14 c.G1866T p.W622C GTAGAGCCAGGCG . 213.0 66.0 148.0 1.0 . 104 . . Atlas-SNP PRR12 57479 hgsc.bcm.edu hg19 19 50119403 50119403 + Silent SNP C C T novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . PRR12 NM_020719 exon9 c.C5424T p.N1808N CGGCAACGCTACA . 310.0 84.0 217.0 0.0 . 157 . . Atlas-SNP ACPT 93650 hgsc.bcm.edu hg19 19 51293729 51293729 + Missense_Mutation SNP C C G novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 ACPT,NS,carcinoma,0,1 ACPT NM_033068 exon1 c.C58G p.L20V CTGCTGCTGGTGC . 87.0 4.0 66.0 0.0 . 43 . . Atlas-SNP SIGLECL1 284369 hgsc.bcm.edu hg19 19 51769106 51769106 + Missense_Mutation SNP C C T rs149546733 bycluster TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 C19orf75,rectum,carcinoma,0,1 . NM_173635 exon4 c.C380T p.A127V TAATTGCGCTGCT . 89.0 19.0 98.0 0.0 . . . C|1.000;T|0.000 Atlas-SNP CECR6 27439 hgsc.bcm.edu hg19 22 17600295 17600295 + Missense_Mutation SNP C C G novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . CECR6 NM_031890 exon1 c.G1723C p.A575P GAGAGGCCACAGC . 131.0 49.0 93.0 0.0 . 11 . . Atlas-SNP PRR5 55615 hgsc.bcm.edu hg19 22 45132983 45132983 + Silent SNP C C T novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . PRR5 NM_001198721 exon10 c.C1092T p.P364P CCTGCCCCGCTCC . 133.0 45.0 107.0 0.0 . 75 . . Atlas-SNP TBC1D22A 25771 hgsc.bcm.edu hg19 22 47193446 47193446 + Missense_Mutation SNP C C T novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . TBC1D22A NM_014346 exon4 c.C566T p.A189V GCTCAGCGCTGAG . 220.0 59.0 220.0 0.0 . 54 . . Atlas-SNP OFD1 8481 hgsc.bcm.edu hg19 X 13778504 13778504 + Missense_Mutation SNP C C G novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . OFD1 NM_003611 exon16 c.C1925G p.A642G AAGAGGCCGAACG . 110.0 67.0 101.0 0.0 . 109 . . Atlas-SNP CXorf64 100130613 hgsc.bcm.edu hg19 X 125954737 125954737 + Missense_Mutation SNP C C G novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . . NM_001122716 exon2 c.C116G p.S39C TGAGTTCCAAGCC . 216.0 57.0 127.0 0.0 . . . . Atlas-SNP ND1 10625 hgsc.bcm.edu hg19 MT 3898 3898 + Missense_Mutation SNP T T C novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . . ENST00000361390 exon1 c.T592C p.F198L ACCCCCTTCGACC . 41.0 7.0 48.0 0.0 . . . . Atlas-SNP ND1 10625 hgsc.bcm.edu hg19 MT 3946 3946 + Missense_Mutation SNP G G A novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . . ENST00000361390 exon1 c.G640A p.E214K AACATCGAATACG . 45.0 18.0 41.0 0.0 . . . . Atlas-SNP ND3 0 hgsc.bcm.edu hg19 MT 10167 10167 + Missense_Mutation SNP T T C novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . . ENST00000361227 exon1 c.T109C p.Y37H ACCCCTTACGAGT . 26.0 5.0 40.0 0.0 . . . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7577153 7577153 + Frame_Shift_Del DEL C C - novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 TP53_ENST00000455263,NS,carcinoma,-1,2 TP53 NM_001126112 exon8 c.786delT p.G262fs . . 72.0 28.0 78.0 0.0 . 33396 . . Atlas-Indel,Pindel ZNF254 9534 hgsc.bcm.edu hg19 19 24309680 24309681 + Frame_Shift_Del DEL CT CT - novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 CT CT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . ZNF254 NM_203282 exon4 c.877_878del p.293_293del . . 183.0 17.0 159.0 0.0 . 88 . . Atlas-INDEL MANEA 79694 hgsc.bcm.edu hg19 6 96034580 96034584 + Frame_Shift_Del DEL TCTGA TCTGA - novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 TCTGA TCTGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . MANEA NM_024641 exon2 c.264_268del p.88_90del . . 112.0 18.0 119.0 0.0 . 58 . . Atlas-INDEL ST14 6768 hgsc.bcm.edu hg19 11 130079716 130079716 + Frame_Shift_Del DEL T T - novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . ST14 NM_021978 exon19 c.2565delA p.V855fs . . 89.0 21.0 55.0 0.0 . 82 . . Atlas-Indel,Pindel AXIN1 8312 hgsc.bcm.edu hg19 16 364646 364647 + Frame_Shift_Ins INS - - A novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . AXIN1 NM_003502 exon3 c.916_917insT p.V306fs . . 59.0 30.0 53.0 0.0 . 290 . . Atlas-Indel,Pindel MANEA 79694 hgsc.bcm.edu hg19 6 96034593 96034595 + In_Frame_Del DEL TGG TGG - novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 TGG TGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . MANEA NM_024641 exon2 c.277_279del p.93_93del . . 97.0 18.0 122.0 0.0 . 58 . . Atlas-INDEL VCX2 51480 hgsc.bcm.edu hg19 X 8138182 8138182 + Frame_Shift_Del DEL A A - novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . VCX2 NM_016378 exon3 c.312delG p.L104fs . . 166.0 11.0 138.0 0.0 . 16 . . Atlas-INDEL MANEA 79694 hgsc.bcm.edu hg19 6 96034587 96034590 + Frame_Shift_Del DEL TTAA TTAA - novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 TTAA TTAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . MANEA NM_024641 exon2 c.271_274del p.91_92del . . 108.0 18.0 121.0 0.0 . 58 . . Atlas-INDEL PLEC 5339 hgsc.bcm.edu hg19 8 144990483 144990518 + In_Frame_Del DEL GCGGGAGCCGGCCCGGGAGCCGGTGCGCGAGCCGGT GCGGGAGCCGGCCCGGGAGCCGGTGCGCGAGCCGGT - novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 GCGGGAGCCGGCCCGGGAGCCGGTGCGCGAGCCGGT GCGGGAGCCGGCCCGGGAGCCGGTGCGCGAGCCGGT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . PLEC NM_201380 exon32 c.13883_13918del p.4628_4640del . . 173.0 32.0 104.0 0.0 . 1144 . . Atlas-Indel,Pindel AGL 178 hgsc.bcm.edu hg19 1 100381999 100382000 + Frame_Shift_Del DEL AT AT - novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 AT AT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . AGL NM_000644 exon32 c.4292_4293del p.1431_1431del . . 434.0 141.0 352.0 0.0 . 137 . . Atlas-Indel,Pindel IARS 3376 hgsc.bcm.edu hg19 9 95007263 95007270 + Frame_Shift_Del DEL AATTGCGC AATTGCGC - novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 AATTGCGC AATTGCGC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . IARS NM_002161 exon27 c.2876_2883del p.959_961del . . 103.0 13.0 106.0 0.0 . 74 . . Pindel MANEA 79694 hgsc.bcm.edu hg19 6 96034580 96034596 + Frame_Shift_Del DEL TCTGAACTTAACTTGGA TCTGAACTTAACTTGGA - novel TCGA-G3-AAV7-01A-11D-A382-10 TCGA-G3-AAV7-10A-01D-A385-10 TCTGAACTTAACTTGGA TCTGAACTTAACTTGGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7a120ba7-e59d-48f3-9e72-4b0466e25e4c 07777f2e-37eb-4fc2-9804-a93484b12424 . MANEA NM_024641 exon2 c.264_280del p.88_94del . . 110.0 24.0 123.0 0.0 . 58 . . Pindel