Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
MIB2	142678	hgsc.bcm.edu	hg19	1	1558785	1558785	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	MIB2	NM_001170686	exon3	c.C298G	p.P100A	GCCCGGCCCACCA	.	153.0	59.0	142.0	0.0	.	62	.	.	Atlas-SNP
FOXD2	2306	hgsc.bcm.edu	hg19	1	47904970	47904970	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	FOXD2	NM_004474	exon1	c.G1163T	p.R388L	TTCTGCGCCAGGG	.	12.0	6.0	13.0	0.0	.	16	.	.	Atlas-SNP
SCP2	6342	hgsc.bcm.edu	hg19	1	53443889	53443889	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	SCP2,NS,carcinoma,0,1	SCP2	NM_002979	exon9	c.T675G	p.C225W	TCTTAGTCCCACT	.	88.0	42.0	79.0	0.0	.	44	.	.	Atlas-SNP
TM2D1	83941	hgsc.bcm.edu	hg19	1	62175038	62175038	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	TM2D1_ENST00000371177,NS,carcinoma,0,3	TM2D1	NM_032027	exon3	c.G310C	p.E104Q	CAACTTCGTTCCC	.	365.0	113.0	316.0	2.0	.	37	.	.	Atlas-SNP
ARHGEF11	9826	hgsc.bcm.edu	hg19	1	156914158	156914158	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	ARHGEF11	NM_198236	exon31	c.A3059T	p.K1020M	AAGGTCTTATCCT	.	142.0	32.0	71.0	0.0	.	168	.	.	Atlas-SNP
RASAL2	9462	hgsc.bcm.edu	hg19	1	178427542	178427542	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	RASAL2_ENST00000462775,NS,lymphoid_neoplasm,0,5	RASAL2	NM_170692	exon14	c.G3115A	p.G1039R	AGCACCGGGAGCA	.	174.0	33.0	94.0	0.0	.	334	.	.	Atlas-SNP
NPHS2	7827	hgsc.bcm.edu	hg19	1	179544879	179544879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	NPHS2	NM_014625	exon1	c.G121A	p.A41T	GCCCAGCCTCCTG	.	52.0	18.0	51.0	0.0	.	46	.	.	Atlas-SNP
MRPL55	128308	hgsc.bcm.edu	hg19	1	228295710	228295710	+	Silent	SNP	G	G	C	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	MRPL55	NM_181462	exon4	c.C102G	p.G34G	GGATGAGCCTCGG	.	237.0	105.0	129.0	0.0	.	27	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228504446	228504446	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	OBSCN	NM_001271223	exon62	c.C16193T	p.A5398V	AAAACGCGGCGGT	.	244.0	11.0	118.0	0.0	.	2142	.	.	Atlas-SNP
DYSF	8291	hgsc.bcm.edu	hg19	2	71743345	71743345	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	DYSF	NM_001130982	exon9	c.G924C	p.E308D	TGGGGAGCTGTTT	.	93.0	35.0	85.0	0.0	.	536	.	.	Atlas-SNP
IRS1	3667	hgsc.bcm.edu	hg19	2	227660609	227660609	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	IRS1	NM_005544	exon1	c.G2846A	p.G949D	CTCCGGCCCGGCC	.	96.0	39.0	102.0	0.0	.	141	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266097	41266097	+	Missense_Mutation	SNP	G	G	A	rs28931588	bycluster	TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	CTNNB1,gallbladder,other,0,2	CTNNB1	NM_001098209	exon3	c.G94A	p.D32N	TACCTGGACTCTG	.	172.0	76.0	160.0	0.0	.	4904	.	.	Atlas-SNP
RBM6	10180	hgsc.bcm.edu	hg19	3	50091780	50091780	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	RBM6	NM_005777	exon8	c.A1645G	p.I549V	GCAAACATTGGTG	.	203.0	86.0	169.0	0.0	.	85	.	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195477874	195477874	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	MUC4	NM_018406	exon23	c.C15757T	p.L5253L	CGGCCAGCAGCTG	.	128.0	57.0	102.0	0.0	.	1505	.	.	Atlas-SNP
TAPT1	202018	hgsc.bcm.edu	hg19	4	16204107	16204107	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	TAPT1	NM_153365	exon3	c.A427G	p.T143A	GCAAAGTGAGGAG	.	440.0	168.0	358.0	1.0	.	31	.	.	Atlas-SNP
GPR125	166647	hgsc.bcm.edu	hg19	4	22390453	22390453	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	GPR125	NM_145290	exon19	c.G2841A	p.E947E	TTTGCGCTCAGGG	.	98.0	37.0	107.0	0.0	.	118	.	.	Atlas-SNP
TAF11	6882	hgsc.bcm.edu	hg19	6	34846457	34846457	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	TAF11	NM_001270488	exon4	c.A449G	p.Y150C	GGGTTGTAGTGGT	.	74.0	27.0	73.0	0.0	.	15	.	.	Atlas-SNP
PCMT1	5110	hgsc.bcm.edu	hg19	6	150114716	150114716	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	PCMT1	NM_005389	exon5	c.A503G	p.D168G	GAATTGATCACAT	.	227.0	77.0	199.0	0.0	.	27	.	.	Atlas-SNP
MALSU1	115416	hgsc.bcm.edu	hg19	7	23338987	23338987	+	Missense_Mutation	SNP	C	C	T	rs375849242		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	.	NM_138446	exon1	c.C16T	p.R6C	GGCGGCCGTGTGG	.	123.0	32.0	79.0	0.0	.	.	.	.	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	hg19	7	48431534	48431534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	ABCA13	NM_152701	exon38	c.C11671T	p.L3891F	ACGGGGCTCCACC	.	166.0	33.0	99.0	0.0	.	1192	.	.	Atlas-SNP
GPC2	221914	hgsc.bcm.edu	hg19	7	99768966	99768966	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	GPC2	NM_152742	exon9	c.G1404A	p.R468R	ACGCCGCCGTGTC	.	223.0	66.0	105.0	0.0	.	49	.	.	Atlas-SNP
ZNF862	643641	hgsc.bcm.edu	hg19	7	149543298	149543298	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	ZNF862	NM_001099220	exon3	c.G195A	p.W65X	GCCATGGCTTGGC	.	359.0	199.0	229.0	0.0	.	97	.	.	Atlas-SNP
EN2	2020	hgsc.bcm.edu	hg19	7	155251300	155251300	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	EN2	NM_001427	exon1	c.G228A	p.R76R	CCTGCGGCCCGAG	.	70.0	38.0	82.0	0.0	.	14	.	.	Atlas-SNP
TRIB1	10221	hgsc.bcm.edu	hg19	8	126443458	126443458	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	TRIB1	NM_025195	exon1	c.T314C	p.V105A	AGCATGTGTCCCG	.	52.0	10.0	22.0	0.0	.	73	.	.	Atlas-SNP
TG	7038	hgsc.bcm.edu	hg19	8	133899121	133899121	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	TG	NM_003235	exon9	c.C1504T	p.Q502X	TTTTTCCAGCAAC	.	296.0	68.0	126.0	0.0	.	416	.	.	Atlas-SNP
EPPK1	83481	hgsc.bcm.edu	hg19	8	144940731	144940731	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	EPPK1	NM_031308	exon1	c.G6691T	p.V2231L	CGGGCACCAGGAC	.	109.0	24.0	45.0	0.0	.	199	.	.	Atlas-SNP
EPPK1	83481	hgsc.bcm.edu	hg19	8	144940732	144940732	+	Silent	SNP	C	C	G	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	EPPK1,NS,carcinoma,0,1	EPPK1	NM_031308	exon1	c.G6690C	p.L2230L	GGGCACCAGGACG	.	111.0	23.0	48.0	0.0	.	199	.	.	Atlas-SNP
PARP10	84875	hgsc.bcm.edu	hg19	8	145057702	145057702	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	PARP10	NM_032789	exon8	c.C2055T	p.L685L	CAGGGAGAGGGTT	.	171.0	21.0	59.0	0.0	.	57	.	.	Atlas-SNP
COL27A1	85301	hgsc.bcm.edu	hg19	9	117020825	117020825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	COL27A1	NM_032888	exon28	c.C3146T	p.P1049L	AGGGTCCTCCAGG	.	95.0	40.0	67.0	0.0	.	200	.	.	Atlas-SNP
BTAF1	9044	hgsc.bcm.edu	hg19	10	93716306	93716306	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	BTAF1	NM_003972	exon7	c.G723A	p.E241E	TGGGGAGCCAGAA	.	107.0	31.0	52.0	0.0	.	148	.	.	Atlas-SNP
SUFU	51684	hgsc.bcm.edu	hg19	10	104389858	104389858	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	SUFU	NM_016169	exon12	c.G1401T	p.K467N	TGAAAAGAAGCTG	.	164.0	43.0	113.0	0.0	.	44	.	.	Atlas-SNP
OR5W2	390148	hgsc.bcm.edu	hg19	11	55681633	55681633	+	Silent	SNP	A	A	G	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	OR5W2	NM_001001960	exon1	c.T426C	p.Y142Y	GAGTAGATAGCAC	.	90.0	30.0	66.0	0.0	.	112	.	.	Atlas-SNP
WDR74	54663	hgsc.bcm.edu	hg19	11	62601897	62601897	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	WDR74	NM_018093	exon9	c.719+2T>C	.	ACACTCACTTGCC	.	43.0	16.0	40.0	0.0	.	36	.	.	Atlas-SNP
C11orf95	65998	hgsc.bcm.edu	hg19	11	63533598	63533598	+	Silent	SNP	G	G	A	rs376973642		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	.	NM_001144936	exon2	c.C318T	p.H106H	GTGGTCGTGGTAG	.	67.0	39.0	50.0	0.0	.	.	.	.	Atlas-SNP
EIF1AD	84285	hgsc.bcm.edu	hg19	11	65767088	65767088	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	EIF1AD	NM_001242483	exon4	c.G255A	p.S85S	CACAAACGAGATT	.	126.0	56.0	115.0	0.0	.	10	.	.	Atlas-SNP
ATP5B	506	hgsc.bcm.edu	hg19	12	57037707	57037707	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	ATP5B	NM_001686	exon4	c.T521C	p.M174T	ATTTCCATGAACT	.	81.0	27.0	74.0	0.0	.	48	.	.	Atlas-SNP
ARHGAP9	64333	hgsc.bcm.edu	hg19	12	57868703	57868703	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	ARHGAP9	NM_001080157	exon12	c.G1606T	p.V536L	TGGGCACCGTGTC	.	73.0	25.0	59.0	0.0	.	79	.	.	Atlas-SNP
RASSF3	283349	hgsc.bcm.edu	hg19	12	65085254	65085254	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	RASSF3	NM_178169	exon4	c.C462T	p.Y154Y	AGTCTACGCCTGC	.	77.0	32.0	100.0	0.0	.	18	.	.	Atlas-SNP
TRPV4	59341	hgsc.bcm.edu	hg19	12	110238504	110238504	+	Missense_Mutation	SNP	C	C	A	rs138419280	alternate_allele	TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	TRPV4	NM_147204	exon4	c.G772T	p.V258L	GGGCCACGAGAAG	.	65.0	17.0	47.0	0.0	.	88	.	C|1.000;T|0.000	Atlas-SNP
HECTD4	283450	hgsc.bcm.edu	hg19	12	112617070	112617070	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	.	NM_001109662	exon63	c.C10717T	p.Q3573X	TGATCTGCTCTTT	.	130.0	49.0	109.0	0.0	.	.	.	.	Atlas-SNP
TBX3	6926	hgsc.bcm.edu	hg19	12	115118848	115118848	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	TBX3	NM_005996	exon2	c.T493A	p.F165I	TGTGAAATTTATA	.	211.0	82.0	165.0	0.0	.	106	.	.	Atlas-SNP
MPHOSPH8	54737	hgsc.bcm.edu	hg19	13	20237193	20237193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	MPHOSPH8	NM_017520	exon9	c.C1946T	p.T649I	TAACAACAGTGGC	.	73.0	26.0	79.0	0.0	.	58	.	.	Atlas-SNP
ARHGEF7	8874	hgsc.bcm.edu	hg19	13	111767970	111767970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	ARHGEF7	NM_001113512	exon1	c.G97A	p.A33T	CTGCAGGCGTCGC	.	22.0	7.0	28.0	0.0	.	157	.	.	Atlas-SNP
UPF3A	65110	hgsc.bcm.edu	hg19	13	115067260	115067260	+	Silent	SNP	A	A	G	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	UPF3A	NM_023011	exon9	c.A1062G	p.Q354Q	AGAACAAGAATCT	.	251.0	106.0	238.0	0.0	.	47	.	.	Atlas-SNP
METTL17	64745	hgsc.bcm.edu	hg19	14	21460771	21460771	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	METTL17	NM_022734	exon5	c.C518T	p.A173V	CCAGAGCATTCCA	.	107.0	41.0	80.0	0.0	.	46	.	.	Atlas-SNP
NOVA1	4857	hgsc.bcm.edu	hg19	14	27064670	27064670	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	NOVA1	NM_006489	exon2	c.C226T	p.Q76X	CTTTTTGCAACTG	.	131.0	38.0	135.0	0.0	.	146	.	.	Atlas-SNP
NRXN3	9369	hgsc.bcm.edu	hg19	14	80130128	80130128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	NRXN3	NM_004796	exon14	c.G2333T	p.G778V	AACAGGGGAAAAT	.	178.0	59.0	128.0	0.0	.	342	.	.	Atlas-SNP
MGA	23269	hgsc.bcm.edu	hg19	15	41988500	41988500	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	MGA	NM_001080541	exon3	c.A1292G	p.N431S	GGCACAATAAAGT	.	113.0	45.0	86.0	0.0	.	264	.	.	Atlas-SNP
CDAN1	146059	hgsc.bcm.edu	hg19	15	43020923	43020923	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	CDAN1	NM_138477	exon20	c.C2731G	p.P911A	GGGCTGGGTCTCC	.	136.0	46.0	122.0	0.0	.	70	.	.	Atlas-SNP
ADAMTS17	170691	hgsc.bcm.edu	hg19	15	100821591	100821591	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	ADAMTS17	NM_139057	exon4	c.C632T	p.T211M	CCCCACGTCGGCT	.	48.0	20.0	30.0	0.0	.	127	.	.	Atlas-SNP
PDIA2	64714	hgsc.bcm.edu	hg19	16	335324	335324	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	PDIA2	NM_006849	exon6	c.A808T	p.I270F	GCCAAGATCTTCG	.	74.0	33.0	54.0	0.0	.	51	.	.	Atlas-SNP
BAIAP3	8938	hgsc.bcm.edu	hg19	16	1391408	1391408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	BAIAP3	NM_003933	exon8	c.G754A	p.G252R	CGCGGTGGACCCC	.	172.0	70.0	167.0	0.0	.	88	.	.	Atlas-SNP
SMG1	23049	hgsc.bcm.edu	hg19	16	18861619	18861619	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	SMG1	NM_015092	exon34	c.C5223T	p.F1741F	CAGGCTGAATATT	.	74.0	38.0	81.0	0.0	.	401	.	.	Atlas-SNP
USP22	23326	hgsc.bcm.edu	hg19	17	20921295	20921295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	USP22	NM_015276	exon5	c.G650A	p.S217N	CAGGAGCTGGGGC	.	46.0	19.0	51.0	0.0	.	45	.	.	Atlas-SNP
LASP1	3927	hgsc.bcm.edu	hg19	17	37074888	37074888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	LASP1	NM_006148	exon7	c.G643A	p.A215T	TACAGCGCCGCCG	.	137.0	34.0	106.0	0.0	.	24	.	.	Atlas-SNP
KRT35	3886	hgsc.bcm.edu	hg19	17	39635730	39635730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	KRT35	NM_002280	exon3	c.C580A	p.Q194K	CCAGCTGCCGCAG	.	112.0	63.0	72.0	0.0	.	58	.	.	Atlas-SNP
ALYREF	10189	hgsc.bcm.edu	hg19	17	79848595	79848595	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	.	NM_005782	exon2	c.G360A	p.L120L	AAAATCCAGATTG	.	124.0	61.0	62.0	0.0	.	.	.	.	Atlas-SNP
TPGS1	91978	hgsc.bcm.edu	hg19	19	519341	519341	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	.	NM_033513	exon2	c.G791T	p.R264L	GGCGGCGGCCCAG	.	7.0	6.0	0.0	0.0	.	.	.	.	Atlas-SNP
CD97	976	hgsc.bcm.edu	hg19	19	14517933	14517933	+	Silent	SNP	C	C	G	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	CD97	NM_078481	exon18	c.C2268G	p.G756G	CTTTGGCCTGTTC	.	70.0	22.0	65.0	0.0	.	86	.	.	Atlas-SNP
QPCTL	54814	hgsc.bcm.edu	hg19	19	46196071	46196071	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	QPCTL	NM_017659	exon1	c.C110T	p.P37L	TCTTGCCTCTGTT	.	117.0	56.0	100.0	0.0	.	24	.	.	Atlas-SNP
BAX	581	hgsc.bcm.edu	hg19	19	49459465	49459465	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	BAX	NM_004324	exon4	c.G244T	p.A82S	ATTGCCGCCGTGG	.	69.0	19.0	96.0	0.0	.	69	.	.	Atlas-SNP
TSKS	60385	hgsc.bcm.edu	hg19	19	50250010	50250010	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	TSKS	NM_021733	exon6	c.C709T	p.R237X	GCCGTCGCGGCGT	.	43.0	16.0	48.0	0.0	.	97	.	.	Atlas-SNP
PTPRA	5786	hgsc.bcm.edu	hg19	20	3005219	3005219	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	PTPRA	NM_002836	exon21	c.C1566G	p.Y522X	AATTTACAACAAA	.	161.0	54.0	139.0	0.0	.	75	.	.	Atlas-SNP
ADNP	23394	hgsc.bcm.edu	hg19	20	49510049	49510049	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	ADNP	NM_015339	exon5	c.C1202G	p.S401C	GAGAGAGAAGAGG	.	35.0	15.0	45.0	0.0	.	106	.	.	Atlas-SNP
FAM209B	388799	hgsc.bcm.edu	hg19	20	55111382	55111382	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	.	NM_001013646	exon2	c.G404A	p.G135D	TTAAAGGTGCCAT	.	213.0	10.0	179.0	0.0	.	.	.	.	Atlas-SNP
SLC5A1	6523	hgsc.bcm.edu	hg19	22	32495294	32495294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	SLC5A1	NM_000343	exon12	c.G1405A	p.A469T	ATTGCGGCTGTCT	.	84.0	4.0	68.0	0.0	.	80	.	.	Atlas-SNP
COX3	5742	hgsc.bcm.edu	hg19	MT	9379	9379	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	.	ENST00000362079	exon1	c.G173A	p.W58X	AATGATGGCGCGA	.	120.0	5.0	42.0	0.0	.	.	.	.	Atlas-SNP
SCAND3	114821	hgsc.bcm.edu	hg19	6	28540012	28540013	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	SCAND3	NM_052923	exon4	c.3654_3655insC	p.N1218fs	.	.	180.0	11.0	129.0	0.0	.	156	.	.	Atlas-INDEL
ALB	213	hgsc.bcm.edu	hg19	4	74283386	74283387	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	ALB	NM_000477	exon11	c.1427_1428del	p.476_476del	.	.	157.0	62.0	137.0	0.0	.	132	.	.	Atlas-INDEL
C16orf86	388284	hgsc.bcm.edu	hg19	16	67701908	67701919	+	In_Frame_Del	DEL	AAAAAAGCCAAG	AAAAAAGCCAAG	-	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	AAAAAAGCCAAG	AAAAAAGCCAAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	C16orf86	NM_001012984	exon3	c.459_470del	p.153_157del	.	.	115.0	25.0	134.0	0.0	.	20	.	.	Atlas-INDEL
RAB11FIP3	9727	hgsc.bcm.edu	hg19	16	570189	570197	+	In_Frame_Del	DEL	GGGGCCGCA	GGGGCCGCA	-	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	GGGGCCGCA	GGGGCCGCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	RAB11FIP3	NM_014700	exon12	c.1927_1935del	p.643_645del	.	.	60.0	18.0	63.0	0.0	.	31	.	.	Atlas-INDEL
AFM	173	hgsc.bcm.edu	hg19	4	74361077	74361078	+	Frame_Shift_Ins	INS	-	-	GA	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	AFM	NM_001133	exon9	c.1119_1120insGA	p.I373fs	.	.	107.0	37.0	103.0	0.0	.	101	.	.	Atlas-INDEL
ALB	213	hgsc.bcm.edu	hg19	4	74274517	74274518	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-G3-AAV5-01A-11D-A36X-10	TCGA-G3-AAV5-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b43b12f-f84d-4283-9cd3-10dab5e6e45a	6f867add-e781-468a-96fe-bb81275f0c31	.	ALB	NM_000477	exon4	c.477_478insA	p.L159fs	.	.	98.0	34.0	83.0	0.0	.	132	.	.	Atlas-INDEL