Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
EXTL1	2134	hgsc.bcm.edu	hg19	1	26349593	26349593	+	Silent	SNP	A	A	G	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	EXTL1	NM_004455	exon1	c.A456G	p.Q152Q	TCTGCAATGGAAC	.	94.0	36.0	132.0	0.0	.	61	.	.	Atlas-SNP
HECTD3	79654	hgsc.bcm.edu	hg19	1	45469948	45469948	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	HECTD3	NM_024602	exon17	c.G2244A	p.E748E	AGTGACCTCTGGA	.	79.0	37.0	103.0	0.0	.	158	.	.	Atlas-SNP
POMGNT1	55624	hgsc.bcm.edu	hg19	1	46654596	46654596	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	POMGNT1	NM_001243766	exon23	c.C2042A	p.P681Q	AGGTTCGGCCTGT	.	90.0	36.0	103.0	0.0	.	96	.	.	Atlas-SNP
TMEM48	55706	hgsc.bcm.edu	hg19	1	54238115	54238115	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	TMEM48	NM_018087	exon17	c.C1848T	p.P616P	AATCCGGGGTGGT	.	155.0	58.0	157.0	0.0	.	47	.	.	Atlas-SNP
PKN2	5586	hgsc.bcm.edu	hg19	1	89251817	89251817	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	PKN2	NM_006256	exon8	c.A1202G	p.N401S	TCGATAATACTGT	.	132.0	51.0	126.0	0.0	.	109	.	.	Atlas-SNP
SETDB1	9869	hgsc.bcm.edu	hg19	1	150936503	150936503	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	SETDB1	NM_012432	exon21	c.T3702G	p.N1234K	CCAGAATGTCTTC	.	129.0	54.0	154.0	0.0	.	204	.	.	Atlas-SNP
FLG	2312	hgsc.bcm.edu	hg19	1	152285059	152285059	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	FLG	NM_002016	exon3	c.C2303A	p.A768D	TGACCAGCCTGTC	.	137.0	67.0	124.0	0.0	.	900	.	.	Atlas-SNP
PIK3C2B	5287	hgsc.bcm.edu	hg19	1	204438438	204438438	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	PIK3C2B	NM_002646	exon3	c.A493G	p.I165V	CCCAGATAGAAGC	.	77.0	25.0	74.0	0.0	.	142	.	.	Atlas-SNP
INTS7	25896	hgsc.bcm.edu	hg19	1	212193463	212193463	+	Splice_Site	SNP	C	C	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	INTS7	NM_001199811	exon4	c.371+1G>A	.	TATATACCGGAGG	.	216.0	112.0	154.0	0.0	.	68	.	.	Atlas-SNP
FLVCR1	28982	hgsc.bcm.edu	hg19	1	213046020	213046020	+	Missense_Mutation	SNP	C	C	T	rs138069386	alternate_allele	TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	FLVCR1	NM_014053	exon3	c.C884T	p.A295V	TCTCAGCCTTCAA	.	481.0	229.0	449.0	1.0	.	31	.	C|1.000;G|0.000	Atlas-SNP
NUP133	55746	hgsc.bcm.edu	hg19	1	229641905	229641905	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	NUP133	NM_018230	exon2	c.G183A	p.R61R	TGTTCCCCTAAAG	.	122.0	45.0	77.0	0.0	.	111	.	.	Atlas-SNP
CMPK2	129607	hgsc.bcm.edu	hg19	2	6990084	6990084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	CMPK2,NS,carcinoma,0,1	CMPK2	NM_207315	exon5	c.G1247A	p.R416Q	TCCATCCGCTGGT	.	134.0	44.0	85.0	0.0	.	30	.	.	Atlas-SNP
APOB	338	hgsc.bcm.edu	hg19	2	21231070	21231070	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	APOB,NS,carcinoma,0,1	APOB	NM_000384	exon26	c.C8670A	p.F2890L	TTTGTGGAAGTAT	.	143.0	50.0	137.0	0.0	.	761	.	.	Atlas-SNP
ABCG5	64240	hgsc.bcm.edu	hg19	2	44051474	44051474	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	ABCG5	NM_022436	exon8	c.T1002G	p.I334M	ATGACAAATTGCT	.	174.0	104.0	140.0	0.0	.	72	.	.	Atlas-SNP
STON1	11037	hgsc.bcm.edu	hg19	2	48809181	48809181	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	STON1	NM_001198595	exon3	c.A1409G	p.Y470C	AATCCTATTATGA	.	152.0	79.0	129.0	0.0	.	100	.	.	Atlas-SNP
C2orf42	54980	hgsc.bcm.edu	hg19	2	70392230	70392230	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	C2orf42	NM_017880	exon8	c.C1347T	p.T449T	CTCTGGGGTATCT	.	120.0	46.0	133.0	0.0	.	30	.	.	Atlas-SNP
LRRTM1	347730	hgsc.bcm.edu	hg19	2	80529936	80529936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	LRRTM1	NM_178839	exon2	c.G1009A	p.D337N	TGCCATCGTAGCG	.	222.0	112.0	233.0	0.0	.	251	.	.	Atlas-SNP
CNNM4	26504	hgsc.bcm.edu	hg19	2	97426789	97426789	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	CNNM4	NM_020184	exon1	c.G53T	p.R18L	GCGGGCGCCTCCT	.	378.0	184.0	397.0	0.0	.	48	.	.	Atlas-SNP
CNGA3	1261	hgsc.bcm.edu	hg19	2	98999859	98999859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	CNGA3,colon,carcinoma,0,1	CNGA3	NM_001298	exon5	c.C404T	p.P135L	CCTGGCCCCTGGC	.	106.0	43.0	107.0	0.0	.	118	.	.	Atlas-SNP
ARHGEF4	50649	hgsc.bcm.edu	hg19	2	131801932	131801932	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	ARHGEF4	NM_032995	exon12	c.G1660A	p.V554M	CTGGAGGTGGTGG	.	233.0	13.0	287.0	0.0	.	89	.	.	Atlas-SNP
MAP3K19	80122	hgsc.bcm.edu	hg19	2	135741259	135741259	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	.	NM_025052	exon8	c.G3209T	p.G1070V	TAGGCTCCCTTTC	.	222.0	37.0	182.0	0.0	.	.	.	.	Atlas-SNP
MAP3K19	80122	hgsc.bcm.edu	hg19	2	135741322	135741322	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	YSK4_ENST00000375845,colon,carcinoma,0,2	.	NM_025052	exon8	c.C3146G	p.S1049C	TTTTCAGAAAATA	.	210.0	39.0	168.0	0.0	.	.	.	.	Atlas-SNP
KIF5C	3800	hgsc.bcm.edu	hg19	2	149864490	149864490	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	KIF5C	NM_004522	exon23	c.A2459G	p.D820G	AGTTGGACAACGA	.	75.0	36.0	78.0	0.0	.	166	.	.	Atlas-SNP
LY75	4065	hgsc.bcm.edu	hg19	2	160755561	160755561	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	LY75	NM_002349	exon2	c.C104A	p.P35H	GTGAAGGGGTCAT	.	46.0	31.0	61.0	0.0	.	151	.	.	Atlas-SNP
FRZB	2487	hgsc.bcm.edu	hg19	2	183731006	183731006	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	FRZB	NM_001463	exon1	c.A275G	p.Y92C	GGCGCGTACATGG	.	90.0	44.0	91.0	0.0	.	42	.	.	Atlas-SNP
PGAP1	80055	hgsc.bcm.edu	hg19	2	197761869	197761869	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	PGAP1	NM_024989	exon7	c.G913T	p.A305S	TATCAGCATCAAT	.	862.0	384.0	834.0	0.0	.	84	.	.	Atlas-SNP
DNER	92737	hgsc.bcm.edu	hg19	2	230312120	230312120	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	DNER	NM_139072	exon8	c.C1398T	p.A466A	AAGCTGGGCACAG	.	372.0	166.0	394.0	0.0	.	129	.	.	Atlas-SNP
TRPM8	79054	hgsc.bcm.edu	hg19	2	234846104	234846104	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	TRPM8	NM_024080	exon4	c.C299A	p.T100N	TTCCTACCGACGC	.	163.0	73.0	152.0	0.0	.	146	.	.	Atlas-SNP
CAPN7	23473	hgsc.bcm.edu	hg19	3	15262371	15262371	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	CAPN7	NM_014296	exon5	c.G521C	p.R174T	CAGTGAGAGCACA	.	320.0	72.0	317.0	0.0	.	63	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266101	41266101	+	Missense_Mutation	SNP	C	C	G	rs121913400	bycluster	TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	CTNNB1,gallbladder,other,0,359	CTNNB1	NM_001098209	exon3	c.C98G	p.S33C	TGGACTCTGGAAT	.	148.0	71.0	160.0	0.0	.	4904	.	.	Atlas-SNP
ROBO1	6091	hgsc.bcm.edu	hg19	3	78701014	78701014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	ROBO1	NM_002941	exon19	c.G2680A	p.V894M	GCTTCACCACATC	.	122.0	47.0	130.0	0.0	.	833	.	.	Atlas-SNP
MYH15	22989	hgsc.bcm.edu	hg19	3	108140007	108140007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	MYH15	NM_014981	exon29	c.G3817A	p.A1273T	GCTTTGCAGTTGC	.	51.0	23.0	39.0	0.0	.	223	.	.	Atlas-SNP
AMOTL2	51421	hgsc.bcm.edu	hg19	3	134080568	134080568	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	AMOTL2	NM_016201	exon6	c.G1361T	p.R454L	TCGGCACGCCGCC	.	55.0	27.0	68.0	0.0	.	52	.	.	Atlas-SNP
LSG1	55341	hgsc.bcm.edu	hg19	3	194369508	194369508	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	LSG1	NM_018385	exon11	c.T1445G	p.V482G	TCTAAAACATGTC	.	98.0	38.0	109.0	0.0	.	38	.	.	Atlas-SNP
DLG1	1739	hgsc.bcm.edu	hg19	3	196867115	196867115	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	DLG1	NM_001098424	exon9	c.C708A	p.F236L	AATGCTGAAACCA	.	127.0	57.0	114.0	0.0	.	120	.	.	Atlas-SNP
FGFRL1	53834	hgsc.bcm.edu	hg19	4	1017449	1017449	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	FGFRL1	NM_001004356	exon4	c.G373T	p.E125X	GGGAAGGAGAGCC	.	114.0	68.0	182.0	0.0	.	77	.	.	Atlas-SNP
PRDM8	56978	hgsc.bcm.edu	hg19	4	81123578	81123578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	PRDM8	NM_001099403	exon4	c.C962T	p.A321V	AGGCGGCGGAGGG	.	82.0	47.0	119.0	0.0	.	44	.	.	Atlas-SNP
SPARCL1	8404	hgsc.bcm.edu	hg19	4	88411474	88411474	+	Silent	SNP	C	C	A	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	SPARCL1	NM_004684	exon7	c.G1482T	p.G494G	TTTGGTCCCCTCC	.	57.0	28.0	80.0	0.0	.	59	.	.	Atlas-SNP
PLRG1	5356	hgsc.bcm.edu	hg19	4	155460255	155460255	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	PLRG1	NM_002669	exon13	c.1151+2T>C	.	ACACTTACTGTCT	.	90.0	53.0	80.0	0.0	.	43	.	.	Atlas-SNP
ANP32C	23520	hgsc.bcm.edu	hg19	4	165118847	165118847	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	ANP32C	NM_012403	exon1	c.G17A	p.R6Q	TGAATCCGTCTGC	.	67.0	17.0	86.0	0.0	.	59	.	.	Atlas-SNP
FBN2	2201	hgsc.bcm.edu	hg19	5	127595357	127595357	+	Silent	SNP	G	G	A	rs140437100		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	FBN2_ENST00000508053,NS,carcinoma,0,1	FBN2	NM_001999	exon65	c.C8529T	p.S2843S	GAAGACGCTGTCA	.	143.0	69.0	134.0	0.0	.	858	.	G|1.000;A|0.000	Atlas-SNP
PCDHGA4	56111	hgsc.bcm.edu	hg19	5	140736155	140736155	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	PCDHGA4	NM_018917	exon1	c.A1388C	p.E463A	TTCCTGAAAACAA	.	126.0	58.0	107.0	0.0	.	150	.	.	Atlas-SNP
DIAPH1	1729	hgsc.bcm.edu	hg19	5	140908429	140908429	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	DIAPH1	NM_005219	exon22	c.T2858G	p.I953S	GGCTTGATATTCT	.	85.0	37.0	98.0	0.0	.	64	.	.	Atlas-SNP
ATOX1	475	hgsc.bcm.edu	hg19	5	151138108	151138108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	ATOX1	NM_004045	exon1	c.C5T	p.P2L	CTCACCGGCATGA	.	426.0	59.0	404.0	0.0	.	4	.	.	Atlas-SNP
DOCK2	1794	hgsc.bcm.edu	hg19	5	169111291	169111291	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	DOCK2	NM_004946	exon8	c.G698T	p.R233I	TGTGCAGAATTGG	.	86.0	36.0	119.0	0.0	.	389	.	.	Atlas-SNP
DOCK2	1794	hgsc.bcm.edu	hg19	5	169494540	169494540	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	DOCK2	NM_004946	exon45	c.C4494T	p.A1498A	GAATGCCATAGAA	.	119.0	48.0	149.0	0.0	.	389	.	.	Atlas-SNP
BTN1A1	696	hgsc.bcm.edu	hg19	6	26508294	26508294	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	BTN1A1	NM_001732	exon6	c.A886G	p.K296E	GAATGGAAAAAGG	.	111.0	45.0	102.0	0.0	.	68	.	.	Atlas-SNP
MDC1	9656	hgsc.bcm.edu	hg19	6	30668320	30668320	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	MDC1	NM_014641	exon15	c.C6192T	p.F2064F	CAGCAGGAACTCA	.	235.0	63.0	197.0	0.0	.	218	.	.	Atlas-SNP
DNAH8	1769	hgsc.bcm.edu	hg19	6	38941510	38941510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	DNAH8	NM_001206927	exon84	c.C12599T	p.T4200I	TAATTACCACTGA	.	144.0	40.0	97.0	0.0	.	1239	.	.	Atlas-SNP
DST	667	hgsc.bcm.edu	hg19	6	56504967	56504967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	DST	NM_001723	exon4	c.C853A	p.L285I	TCAAAAGATCCTG	.	138.0	52.0	83.0	0.0	.	1427	.	.	Atlas-SNP
MMS22L	253714	hgsc.bcm.edu	hg19	6	97610000	97610000	+	Missense_Mutation	SNP	C	C	A	rs149054595	bycluster;by1000genomes;alternate_allele	TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	MMS22L,colon,carcinoma,0,2	MMS22L	NM_198468	exon22	c.G3263T	p.R1088L	GCTAAGCGAGGAG	.	48.0	40.0	77.0	0.0	.	102	.	C|1.000;T|0.000	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	hg19	7	48315020	48315020	+	Silent	SNP	A	A	G	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	ABCA13	NM_152701	exon17	c.A5757G	p.K1919K	GCAGAAATTTTGG	.	193.0	97.0	180.0	0.0	.	1192	.	.	Atlas-SNP
ZPBP	11055	hgsc.bcm.edu	hg19	7	50121482	50121482	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	ZPBP	NM_007009	exon3	c.C222T	p.V74V	GAGCATGACATAC	.	81.0	37.0	32.0	0.0	.	65	.	.	Atlas-SNP
SEMA3C	10512	hgsc.bcm.edu	hg19	7	80374265	80374265	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	SEMA3C	NM_006379	exon18	c.C2201T	p.A734V	ATGAGGGCCTTTA	.	113.0	49.0	98.0	0.0	.	106	.	.	Atlas-SNP
MCM7	4176	hgsc.bcm.edu	hg19	7	99697718	99697718	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	MCM7	NM_005916	exon3	c.32-2A>G	.	CTTTTCTGTAACA	.	158.0	67.0	121.0	0.0	.	136	.	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	hg19	7	100682982	100682982	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	MUC17	NM_001040105	exon3	c.C8285A	p.P2762Q	CCCTGCCAGTGGC	.	112.0	22.0	100.0	0.0	.	804	.	.	Atlas-SNP
GRM8	2918	hgsc.bcm.edu	hg19	7	126746765	126746765	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	GRM8	NM_000845	exon2	c.T512C	p.I171T	TGAGGTATCTGCA	.	115.0	58.0	119.0	0.0	.	377	.	.	Atlas-SNP
FLNC	2318	hgsc.bcm.edu	hg19	7	128485212	128485212	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	FLNC,NS,carcinoma,0,1	FLNC	NM_001127487	exon21	c.C3693T	p.G1231G	GTATGGCGGGCAT	.	112.0	47.0	173.0	0.0	.	339	.	.	Atlas-SNP
PPP2R2A	5520	hgsc.bcm.edu	hg19	8	26220351	26220351	+	Silent	SNP	T	T	C	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	PPP2R2A	NM_001177591	exon7	c.T819C	p.D273D	CTGTGATAGACAT	.	82.0	27.0	82.0	0.0	.	44	.	.	Atlas-SNP
DMRT3	58524	hgsc.bcm.edu	hg19	9	990709	990709	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	DMRT3	NM_021240	exon2	c.A1123G	p.T375A	AGGAATACTTTGG	.	76.0	27.0	74.0	0.0	.	83	.	.	Atlas-SNP
C9orf24	84688	hgsc.bcm.edu	hg19	9	34380993	34380993	+	Silent	SNP	G	G	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	C9orf24	NM_032596	exon5	c.C609A	p.G203G	GTGGCGGCCCGAG	.	57.0	34.0	63.0	0.0	.	15	.	.	Atlas-SNP
FBXO10	26267	hgsc.bcm.edu	hg19	9	37525102	37525102	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	FBXO10	NM_012166	exon6	c.A1774T	p.T592S	TACCTGTGATGAG	.	82.0	37.0	76.0	0.0	.	75	.	.	Atlas-SNP
PGM5	5239	hgsc.bcm.edu	hg19	9	71006638	71006638	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	PGM5	NM_021965	exon5	c.G886T	p.G296W	GCTGATGGGGTAA	.	145.0	63.0	130.0	0.0	.	80	.	.	Atlas-SNP
PCSK5	5125	hgsc.bcm.edu	hg19	9	78722181	78722181	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	PCSK5	NM_006200	exon9	c.G1122A	p.L374L	AGATCTGAGGCAG	.	65.0	25.0	52.0	0.0	.	329	.	.	Atlas-SNP
PIP5KL1	138429	hgsc.bcm.edu	hg19	9	130688228	130688228	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	PIP5KL1	NM_001135219	exon8	c.C681T	p.R227R	CACCCAGCGGCTC	.	56.0	28.0	75.0	0.0	.	38	.	.	Atlas-SNP
USP20	10868	hgsc.bcm.edu	hg19	9	132614914	132614914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	USP20	NM_001008563	exon3	c.A80G	p.K27R	AATCTAAGGTAAA	.	125.0	55.0	121.0	0.0	.	186	.	.	Atlas-SNP
PRRC2B	84726	hgsc.bcm.edu	hg19	9	134323169	134323169	+	Silent	SNP	C	C	G	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	PRRC2B	NM_013318	exon8	c.C1098G	p.A366A	GGACGCCGATGCC	.	62.0	27.0	85.0	0.0	.	266	.	.	Atlas-SNP
EGFL7	51162	hgsc.bcm.edu	hg19	9	139564771	139564771	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	EGFL7	NM_016215	exon8	c.C560A	p.P187H	TGGCCCCCAACCC	.	136.0	61.0	138.0	0.0	.	11	.	.	Atlas-SNP
EGFL7	51162	hgsc.bcm.edu	hg19	9	139564772	139564772	+	Silent	SNP	C	C	A	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	EGFL7	NM_016215	exon8	c.C561A	p.P187P	GGCCCCCAACCCG	.	134.0	60.0	135.0	0.0	.	11	.	.	Atlas-SNP
PCDH15	65217	hgsc.bcm.edu	hg19	10	55955639	55955639	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	PCDH15	NM_001142763	exon12	c.A1124T	p.D375V	CCATTGTCTTGTT	.	106.0	34.0	116.0	0.0	.	1715	.	.	Atlas-SNP
CDKN1C	1028	hgsc.bcm.edu	hg19	11	2906108	2906108	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	CDKN1C	NM_000076	exon1	c.G612A	p.P204P	CGGGGCCGGGGCC	.	22.0	9.0	13.0	0.0	.	4	.	.	Atlas-SNP
CPSF7	79869	hgsc.bcm.edu	hg19	11	61196760	61196760	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	CPSF7	NM_024811	exon2	c.G77A	p.G26D	AAGATGCCACTGC	.	65.0	4.0	59.0	0.0	.	46	.	.	Atlas-SNP
MAML2	84441	hgsc.bcm.edu	hg19	11	95712358	95712358	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	MAML2	NM_032427	exon5	c.C3225T	p.G1075G	GTTGATGCCCGTC	.	77.0	29.0	67.0	0.0	.	94	.	.	Atlas-SNP
PRDM10	56980	hgsc.bcm.edu	hg19	11	129814881	129814881	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	PRDM10	NM_020228	exon6	c.G547T	p.A183S	CTGAAGCATGCGC	.	282.0	134.0	289.0	0.0	.	120	.	.	Atlas-SNP
JAM3	83700	hgsc.bcm.edu	hg19	11	134018672	134018672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	JAM3	NM_032801	exon8	c.G856A	p.G286R	AACCCAGGGAAAC	.	262.0	150.0	256.0	0.0	.	41	.	.	Atlas-SNP
ARID2	196528	hgsc.bcm.edu	hg19	12	46243941	46243941	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	ARID2	NM_152641	exon15	c.C2035T	p.Q679X	GTGGCACAAACTG	.	175.0	68.0	178.0	0.0	.	311	.	.	Atlas-SNP
CEP290	80184	hgsc.bcm.edu	hg19	12	88447463	88447463	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	CEP290	NM_025114	exon52	c.C7095A	p.N2365K	GTCCTTGTTAGCT	.	73.0	26.0	39.0	0.0	.	195	.	.	Atlas-SNP
PARP4	143	hgsc.bcm.edu	hg19	13	25068806	25068806	+	Missense_Mutation	SNP	C	C	T	rs145170390	alternate_allele	TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	PARP4	NM_006437	exon7	c.G646A	p.E216K	AATTTTCAAAGTA	.	54.0	17.0	87.0	0.0	.	142	.	C|1.000;G|0.000	Atlas-SNP
TM9SF2	9375	hgsc.bcm.edu	hg19	13	100193842	100193842	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	TM9SF2	NM_004800	exon9	c.T938A	p.F313Y	TTCTCTTCTTATC	.	95.0	49.0	145.0	0.0	.	52	.	.	Atlas-SNP
KTN1	3895	hgsc.bcm.edu	hg19	14	56139682	56139682	+	Silent	SNP	A	A	G	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	KTN1	NM_001079521	exon39	c.A3639G	p.L1213L	GGAACTAGAAAAG	.	234.0	98.0	171.0	0.0	.	147	.	.	Atlas-SNP
PLEKHH1	57475	hgsc.bcm.edu	hg19	14	68028676	68028676	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	PLEKHH1	NM_020715	exon6	c.G429A	p.E143E	GCTTGAGATGGAG	.	169.0	92.0	182.0	0.0	.	118	.	.	Atlas-SNP
TBL3	10607	hgsc.bcm.edu	hg19	16	2026919	2026919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	TBL3	NM_006453	exon14	c.C1397T	p.P466L	ACGGCCCTATCCT	.	101.0	56.0	129.0	0.0	.	54	.	.	Atlas-SNP
VPS9D1	9605	hgsc.bcm.edu	hg19	16	89777150	89777150	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	.	NM_004913	exon10	c.G1102T	p.D368Y	CGGTGTCCCCCAG	.	122.0	13.0	148.0	0.0	.	.	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7578177	7578177	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	TP53_ENST00000545858,colon,carcinoma,0,1	TP53	NM_000546	exon6	c.G672A	p.E224E	CCAGACCTCAGGC	.	56.0	41.0	134.0	0.0	.	33396	.	.	Atlas-SNP
DNAH2	146754	hgsc.bcm.edu	hg19	17	7695575	7695575	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	DNAH2	NM_020877	exon45	c.G7059A	p.T2353T	GGACACGGTATAT	.	45.0	32.0	122.0	0.0	.	498	.	.	Atlas-SNP
RCVRN	5957	hgsc.bcm.edu	hg19	17	9808459	9808459	+	Silent	SNP	G	G	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	RCVRN	NM_002903	exon1	c.C39A	p.I13I	CTCCAGGATCTCC	.	42.0	38.0	71.0	0.0	.	34	.	.	Atlas-SNP
SYNRG	11276	hgsc.bcm.edu	hg19	17	35913872	35913872	+	Silent	SNP	A	A	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	SYNRG	NM_007247	exon14	c.T1953A	p.S651S	AGCAGCAGAACCT	.	91.0	39.0	122.0	0.0	.	101	.	.	Atlas-SNP
FASN	2194	hgsc.bcm.edu	hg19	17	80038356	80038356	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	FASN	NM_004104	exon40	c.G6937A	p.V2313M	AGGCCACGCAGGC	.	63.0	31.0	86.0	0.0	.	154	.	.	Atlas-SNP
FOXK2	3607	hgsc.bcm.edu	hg19	17	80477826	80477826	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	FOXK2,NS,carcinoma,0,1	FOXK2	NM_004514	exon1	c.G62C	p.G21A	GGGCCGGGGGCGG	.	5.0	2.0	4.0	0.0	.	46	.	.	Atlas-SNP
POTEC	388468	hgsc.bcm.edu	hg19	18	14542926	14542926	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	POTEC	NM_001137671	exon1	c.G220T	p.G74W	CGCTCCCCCTGCA	.	390.0	83.0	565.0	0.0	.	129	.	.	Atlas-SNP
ANKRD24	170961	hgsc.bcm.edu	hg19	19	4202880	4202880	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	ANKRD24	NM_133475	exon7	c.G423A	p.V141V	CGTGGTGGACGTC	.	248.0	105.0	271.0	0.0	.	180	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9066696	9066696	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	MUC16	NM_024690	exon3	c.T20750A	p.M6917K	GTATCCATTGGAG	.	82.0	39.0	89.0	0.0	.	4315	.	.	Atlas-SNP
ZNF302	55900	hgsc.bcm.edu	hg19	19	35175888	35175888	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	ZNF302	NM_018443	exon5	c.C946T	p.R316C	GAGTGTCGTATAT	.	164.0	53.0	138.0	0.0	.	27	.	.	Atlas-SNP
ZNF383	163087	hgsc.bcm.edu	hg19	19	37734077	37734077	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	ZNF383	NM_152604	exon5	c.G939C	p.K313N	ATGTAAGGAATGT	.	94.0	38.0	86.0	0.0	.	42	.	.	Atlas-SNP
CCDC155	147872	hgsc.bcm.edu	hg19	19	49899026	49899026	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	CCDC155	NM_144688	exon5	c.G336A	p.G112G	ATACAGGGGATTA	.	33.0	16.0	42.0	0.0	.	46	.	.	Atlas-SNP
SHANK1	50944	hgsc.bcm.edu	hg19	19	51170472	51170472	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	SHANK1	NM_016148	exon22	c.C4745A	p.S1582X	AGGGGCGACTCTG	.	63.0	12.0	98.0	0.0	.	210	.	.	Atlas-SNP
HAS1	3036	hgsc.bcm.edu	hg19	19	52222893	52222893	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	HAS1	NM_001523	exon2	c.G268T	p.D90Y	CTGCATCCAGCGG	.	89.0	45.0	104.0	0.0	.	61	.	.	Atlas-SNP
ZNF628	89887	hgsc.bcm.edu	hg19	19	55995321	55995321	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	ZNF628	NM_033113	exon3	c.G2761T	p.D921Y	GTCCAGGATGTCC	.	108.0	47.0	96.0	0.0	.	75	.	.	Atlas-SNP
ZNF304	57343	hgsc.bcm.edu	hg19	19	57867488	57867488	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	ZNF304	NM_020657	exon3	c.T251A	p.L84H	CAGGTCTTTTCCA	.	156.0	66.0	187.0	0.0	.	74	.	.	Atlas-SNP
TPX2	22974	hgsc.bcm.edu	hg19	20	30381706	30381706	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	TPX2	NM_012112	exon14	c.C1565T	p.P522L	GGGTGCCTTTTAA	.	226.0	91.0	230.0	0.0	.	61	.	.	Atlas-SNP
PRDM15	63977	hgsc.bcm.edu	hg19	21	43221607	43221607	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	PRDM15	NM_022115	exon31	c.G4317A	p.Q1439Q	CACAGACTGTGGG	.	131.0	74.0	226.0	0.0	.	110	.	.	Atlas-SNP
CDC42EP1	11135	hgsc.bcm.edu	hg19	22	37964811	37964811	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	CDC42EP1	NM_152243	exon3	c.A1160G	p.D387G	AGGATGATGAGGT	.	191.0	77.0	214.0	0.0	.	53	.	.	Atlas-SNP
TCF20	6942	hgsc.bcm.edu	hg19	22	42608026	42608026	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	TCF20	NM_181492	exon1	c.G3286T	p.E1096X	TATACTCCTCTGG	.	103.0	44.0	107.0	0.0	.	164	.	.	Atlas-SNP
A4GALT	53947	hgsc.bcm.edu	hg19	22	43089164	43089164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	A4GALT	NM_017436	exon3	c.G794A	p.R265H	AGGCTGCGGATGG	.	56.0	27.0	65.0	0.0	.	35	.	.	Atlas-SNP
ASB11	140456	hgsc.bcm.edu	hg19	X	15306022	15306022	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	ASB11	NM_080873	exon6	c.G828A	p.Q276Q	GAGTGCCTGCTCC	.	143.0	35.0	189.0	0.0	.	79	.	.	Atlas-SNP
MAGEB10	139422	hgsc.bcm.edu	hg19	X	27839801	27839801	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	MAGEB10	NM_182506	exon3	c.C378T	p.Y126Y	CAAGTACCAAATG	.	264.0	146.0	391.0	0.0	.	107	.	.	Atlas-SNP
TAF1	6872	hgsc.bcm.edu	hg19	X	70595090	70595090	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	TAF1	NM_004606	exon4	c.C486T	p.P162P	TCCACCCCCGGGA	.	117.0	36.0	158.0	0.0	.	439	.	.	Atlas-SNP
BCAP31	10134	hgsc.bcm.edu	hg19	X	152966418	152966418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	BCAP31	NM_001139457	exon8	c.G916A	p.G306S	TGGGACCATCTAC	.	202.0	70.0	318.0	0.0	.	33	.	.	Atlas-SNP
IFIT2	3433	hgsc.bcm.edu	hg19	10	91066639	91066653	+	In_Frame_Del	DEL	AAAGAAAGTTACTGG	AAAGAAAGTTACTGG	-	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	AAAGAAAGTTACTGG	AAAGAAAGTTACTGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	IFIT2	NM_001547	exon2	c.925_939del	p.309_313del	.	.	86.0	14.0	117.0	0.0	.	39	.	.	Atlas-Indel,Pindel
BTN1A1	696	hgsc.bcm.edu	hg19	6	26508287	26508307	+	Splice_Site	DEL	ATCTTTCTCTTTTGTTGCAGA	ATCTTTCTCTTTTGTTGCAGA	-	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	ATCTTTCTCTTTTGTTGCAGA	ATCTTTCTCTTTTGTTGCAGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	BTN1A1	.	.	.	.	.	.	103.0	30.0	111.0	0.0	.	68	.	.	Atlas-Indel,Pindel
GPR4	2828	hgsc.bcm.edu	hg19	19	46094909	46094932	+	In_Frame_Del	DEL	CAGCGGCAGCGTGCAGATGTACAG	CAGCGGCAGCGTGCAGATGTACAG	-	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	CAGCGGCAGCGTGCAGATGTACAG	CAGCGGCAGCGTGCAGATGTACAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	GPR4	NM_005282	exon2	c.194_217del	p.65_73del	.	.	92.0	23.0	147.0	0.0	.	54	.	.	Atlas-Indel,Pindel
TBP	6908	hgsc.bcm.edu	hg19	6	170871073	170871074	+	In_Frame_Ins	INS	-	-	CAA	rs201732168	by1000genomes;alternate_allele	TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	TBP,NS,carcinoma,0,1	TBP	NM_003194	exon3	c.249_250insCAA	p.Q83delinsQQ	.	.	27.0	17.0	74.0	0.0	.	58	.	-|0.138;CAG|0.862	Atlas-INDEL
ARID2	196528	hgsc.bcm.edu	hg19	12	46230522	46230549	+	In_Frame_Del	DEL	TTGTAGAAGGTACATCAGGAGAATGGAT	TTGTAGAAGGTACATCAGGAGAATGGAT	-	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	TTGTAGAAGGTACATCAGGAGAATGGAT	TTGTAGAAGGTACATCAGGAGAATGGAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	ARID2	NM_152641	exon8	c.773_793del	p.258_265del	.	.	145.0	30.0	184.0	0.0	.	311	.	.	Atlas-Indel,Pindel
ABHD11	83451	hgsc.bcm.edu	hg19	7	73152683	73152692	+	Frame_Shift_Del	DEL	ATCTTGGCGA	ATCTTGGCGA	-	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	ATCTTGGCGA	ATCTTGGCGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	ABHD11	NM_001145364	exon2	c.255_264del	p.85_88del	.	.	123.0	42.0	222.0	0.0	.	11	.	.	Atlas-Indel,Pindel
SMPD4	55627	hgsc.bcm.edu	hg19	2	130914822	130914851	+	In_Frame_Del	DEL	CCGCAAGGGCCACCCACCGTTTGAACTCCT	CCGCAAGGGCCACCCACCGTTTGAACTCCT	-	novel		TCGA-G3-AAV4-01A-11D-A382-10	TCGA-G3-AAV4-10A-01D-A385-10	CCGCAAGGGCCACCCACCGTTTGAACTCCT	CCGCAAGGGCCACCCACCGTTTGAACTCCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	06bccdcf-87ad-48ed-aa9c-22d424205377	1b9df221-8334-487b-8fa2-09fb7b75273d	.	SMPD4	NM_017951	exon12	c.1203_1214del	p.401_405del	.	.	148.0	11.0	236.0	0.0	.	67	.	.	Pindel