Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
GABPB2	126626	hgsc.bcm.edu	hg19	1	151079530	151079530	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	GABPB2	NM_144618	exon7	c.A754G	p.I252V	GAAATTATAGAAG	.	103.0	16.0	61.0	0.0	.	41	.	.	Atlas-SNP
PIGM	93183	hgsc.bcm.edu	hg19	1	160000854	160000854	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	PIGM	NM_145167	exon1	c.G676T	p.A226S	GCACAGCCCGATT	.	200.0	28.0	92.0	0.0	.	27	.	.	Atlas-SNP
TROVE2	6738	hgsc.bcm.edu	hg19	1	193045716	193045716	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	TROVE2	NM_004600	exon4	c.C887T	p.P296L	TTGAACCAGGAAA	.	419.0	84.0	250.0	0.0	.	50	.	.	Atlas-SNP
HHAT	55733	hgsc.bcm.edu	hg19	1	210637884	210637884	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	HHAT	NM_001170587	exon7	c.G895T	p.V299L	TTCTACGTGAAGT	.	92.0	15.0	55.0	0.0	.	66	.	.	Atlas-SNP
EPHX1	2052	hgsc.bcm.edu	hg19	1	226027596	226027596	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	EPHX1	NM_001136018	exon6	c.C789T	p.L263L	CCTCCTCCTGGGA	.	173.0	68.0	92.0	0.0	.	57	.	.	Atlas-SNP
OR2T4	127074	hgsc.bcm.edu	hg19	1	248525799	248525799	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	OR2T4	NM_001004696	exon1	c.T917C	p.V306A	TGATGGTATCTGT	.	736.0	154.0	496.0	0.0	.	126	.	.	Atlas-SNP
PGBD2	267002	hgsc.bcm.edu	hg19	1	249212344	249212344	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	PGBD2	NM_170725	exon3	c.G1561T	p.A521S	TACATTGCCTGTG	.	78.0	14.0	57.0	0.0	.	103	.	.	Atlas-SNP
TPO	7173	hgsc.bcm.edu	hg19	2	1459869	1459869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	TPO	NM_175719	exon7	c.G634T	p.V212F	AGACATGTCATTC	.	174.0	35.0	123.0	0.0	.	224	.	.	Atlas-SNP
HADHB	3032	hgsc.bcm.edu	hg19	2	26502123	26502123	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	HADHB	NM_000183	exon9	c.C751G	p.L251V	CACAGTCTAGCCA	.	78.0	16.0	54.0	0.0	.	50	.	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	hg19	2	141625228	141625228	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	LRP1B	NM_018557	exon27	c.A4510G	p.S1504G	TCACACTGACATT	.	131.0	26.0	126.0	0.0	.	1315	.	.	Atlas-SNP
XIRP2	129446	hgsc.bcm.edu	hg19	2	168107938	168107938	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	XIRP2	NM_152381	exon9	c.T10036A	p.S3346T	CCAGTTTCTGAAG	.	193.0	40.0	107.0	0.0	.	914	.	.	Atlas-SNP
NFE2L2	4780	hgsc.bcm.edu	hg19	2	178098803	178098803	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	NFE2L2,NS,carcinoma,-1,11	NFE2L2	NM_006164	exon2	c.G242C	p.G81A	AATTCACCTGTCT	.	69.0	17.0	48.0	0.0	.	225	.	.	Atlas-SNP
ATIC	471	hgsc.bcm.edu	hg19	2	216198147	216198147	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	ATIC	NM_004044	exon9	c.A889T	p.T297S	ACCCTCACACCCA	.	171.0	31.0	129.0	0.0	.	84	.	.	Atlas-SNP
IGFBP5	3488	hgsc.bcm.edu	hg19	2	217542908	217542908	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	IGFBP5	NM_000599	exon3	c.C614T	p.A205V	GGGCTGGCTTTGA	.	236.0	48.0	166.0	0.0	.	13	.	.	Atlas-SNP
STK11IP	114790	hgsc.bcm.edu	hg19	2	220466724	220466724	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	STK11IP	NM_052902	exon5	c.C390T	p.P130P	TGTTCCCCTCCAC	.	59.0	16.0	28.0	0.0	.	152	.	.	Atlas-SNP
PER2	8864	hgsc.bcm.edu	hg19	2	239184515	239184515	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	PER2	NM_022817	exon4	c.A317T	p.D106V	TGTGTGTCCACTT	.	98.0	20.0	69.0	0.0	.	85	.	.	Atlas-SNP
LRRN1	57633	hgsc.bcm.edu	hg19	3	3887129	3887129	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	LRRN1	NM_020873	exon2	c.A804C	p.L268F	ATTCTTAGACCTC	.	150.0	21.0	118.0	0.0	.	82	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266097	41266097	+	Missense_Mutation	SNP	G	G	T	rs28931588	bycluster	TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	CTNNB1,gallbladder,other,0,2	CTNNB1	NM_001098209	exon3	c.G94T	p.D32Y	TACCTGGACTCTG	.	152.0	45.0	151.0	0.0	.	4904	.	.	Atlas-SNP
FAM208A	23272	hgsc.bcm.edu	hg19	3	56705673	56705673	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	FAM208A	NM_001112736	exon3	c.G525T	p.K175N	AAGTTCCTTATCT	.	116.0	29.0	54.0	0.0	.	113	.	.	Atlas-SNP
PLA1A	51365	hgsc.bcm.edu	hg19	3	119328406	119328406	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	PLA1A	NM_015900	exon4	c.A545T	p.Q182L	GAGGCCAGCTGGG	.	90.0	19.0	73.0	0.0	.	65	.	.	Atlas-SNP
SLC2A2	6514	hgsc.bcm.edu	hg19	3	170732356	170732356	+	Silent	SNP	T	T	C	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	SLC2A2	NM_000340	exon3	c.A273G	p.Q91Q	GATTAGTTGAGCA	.	117.0	29.0	100.0	0.0	.	71	.	.	Atlas-SNP
CPZ	8532	hgsc.bcm.edu	hg19	4	8605798	8605798	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	CPZ	NM_001014447	exon4	c.A592T	p.R198W	GTGCTGAGGCGGA	.	78.0	19.0	45.0	0.0	.	95	.	.	Atlas-SNP
PRKG2	5593	hgsc.bcm.edu	hg19	4	82073196	82073196	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	PRKG2	NM_006259	exon7	c.C1003T	p.Q335X	TGCTCTGTGTTAC	.	81.0	24.0	62.0	0.0	.	195	.	.	Atlas-SNP
ESM1	11082	hgsc.bcm.edu	hg19	5	54281052	54281052	+	Silent	SNP	G	G	T	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	ESM1	NM_001135604	exon1	c.C294A	p.I98I	TTTGCAGATACCA	.	97.0	5.0	59.0	0.0	.	27	.	.	Atlas-SNP
BDP1	55814	hgsc.bcm.edu	hg19	5	70805742	70805742	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	BDP1	NM_018429	exon17	c.A2823T	p.K941N	ACAGAAAAATGGC	.	206.0	38.0	168.0	0.0	.	204	.	.	Atlas-SNP
PCDHA13	56136	hgsc.bcm.edu	hg19	5	140263516	140263516	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	PCDHA13	NM_031865	exon1	c.G1663A	p.V555M	GTGTTCGTGCTGG	.	82.0	21.0	39.0	0.0	.	213	.	.	Atlas-SNP
LRRC16A	55604	hgsc.bcm.edu	hg19	6	25420378	25420378	+	Nonsense_Mutation	SNP	C	C	T	rs79463028	bycluster	TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	LRRC16A,NS,carcinoma,0,1	LRRC16A	NM_001173977	exon3	c.C175T	p.R59X	ACAGCGCGAATCC	.	104.0	15.0	74.0	0.0	.	168	.	.	Atlas-SNP
HIST1H3I	8354	hgsc.bcm.edu	hg19	6	27839711	27839711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	HIST1H3I	NM_003533	exon1	c.C383T	p.A128V	CGGCGCGCAAGCT	.	144.0	29.0	88.0	0.0	.	28	.	.	Atlas-SNP
FTSJD2	23070	hgsc.bcm.edu	hg19	6	37414111	37414111	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	FTSJD2	NM_015050	exon4	c.C330A	p.S110R	ATACAGCCAGGGT	.	226.0	40.0	114.0	0.0	.	64	.	.	Atlas-SNP
LAMA4	3910	hgsc.bcm.edu	hg19	6	112430681	112430681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	LAMA4	NM_001105206	exon39	c.G5431A	p.V1811I	CGCTGACCAGGGC	.	85.0	30.0	71.0	0.0	.	227	.	.	Atlas-SNP
PLEKHG1	57480	hgsc.bcm.edu	hg19	6	151130378	151130378	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	PLEKHG1	NM_001029884	exon9	c.C1050G	p.I350M	GCTCATCACGAAG	.	63.0	13.0	62.0	0.0	.	97	.	.	Atlas-SNP
CCDC170	80129	hgsc.bcm.edu	hg19	6	151907029	151907029	+	Silent	SNP	C	C	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	.	NM_025059	exon7	c.C1098A	p.V366V	GATGGTCTCCCAG	.	71.0	14.0	85.0	0.0	.	.	.	.	Atlas-SNP
AMPH	273	hgsc.bcm.edu	hg19	7	38500941	38500941	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	AMPH	NM_139316	exon11	c.T959A	p.I320N	CTGATGATGTTCT	.	129.0	12.0	109.0	0.0	.	157	.	.	Atlas-SNP
SAMD9	54809	hgsc.bcm.edu	hg19	7	92735147	92735147	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	SAMD9	NM_001193307	exon2	c.G264T	p.M88I	CTTTCCCATCTTA	.	146.0	35.0	100.0	0.0	.	239	.	.	Atlas-SNP
NRCAM	4897	hgsc.bcm.edu	hg19	7	107875094	107875094	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	NRCAM	NM_001037132	exon3	c.G163C	p.D55H	TGTAATCTTTTGG	.	110.0	25.0	70.0	0.0	.	267	.	.	Atlas-SNP
DENND4C	55667	hgsc.bcm.edu	hg19	9	19316642	19316642	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	DENND4C	NM_017925	exon12	c.T1612G	p.S538A	GAAGGCTCAGCGA	.	161.0	28.0	125.0	0.0	.	120	.	.	Atlas-SNP
FAM22F	54754	hgsc.bcm.edu	hg19	9	97084601	97084601	+	Nonsense_Mutation	SNP	G	G	A	rs376058940		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	FAM22F	NM_017561	exon3	c.C724T	p.R242X	GGGATCGGAGAAC	.	392.0	77.0	243.0	0.0	.	72	.	.	Atlas-SNP
PRKCQ	5588	hgsc.bcm.edu	hg19	10	6504265	6504265	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	PRKCQ	NM_006257	exon14	c.G1508T	p.R503M	ATTTACCTGTAGA	.	74.0	17.0	66.0	0.0	.	113	.	.	Atlas-SNP
BEND7	222389	hgsc.bcm.edu	hg19	10	13523008	13523008	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	BEND7	NM_001100912	exon5	c.G837A	p.A279A	AAAAAACGCACAC	.	115.0	5.0	86.0	0.0	.	85	.	.	Atlas-SNP
BMS1	9790	hgsc.bcm.edu	hg19	10	43292088	43292088	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	BMS1	NM_014753	exon10	c.G1396A	p.E466K	GAAGCAGAAGAGG	.	191.0	37.0	135.0	0.0	.	132	.	.	Atlas-SNP
TNKS2	80351	hgsc.bcm.edu	hg19	10	93558604	93558604	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	TNKS2	NM_025235	exon1	c.G157T	p.D53Y	AGCCGCGACACGG	.	93.0	27.0	74.0	0.0	.	103	.	.	Atlas-SNP
PKP3	11187	hgsc.bcm.edu	hg19	11	404567	404567	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	PKP3	NM_007183	exon13	c.T2392A	p.X798K	GGCCCATAGGTGA	.	138.0	28.0	73.0	0.0	.	36	.	.	Atlas-SNP
UBQLNL	143630	hgsc.bcm.edu	hg19	11	5537290	5537290	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	UBQLNL	NM_145053	exon1	c.A382T	p.T128S	CTTTGGTGTTTCT	.	84.0	27.0	63.0	0.0	.	74	.	.	Atlas-SNP
TRIM66	9866	hgsc.bcm.edu	hg19	11	8671412	8671412	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	TRIM66	NM_014818	exon3	c.A32T	p.K11M	GCCCTCTTCTCCT	.	59.0	13.0	44.0	0.0	.	45	.	.	Atlas-SNP
USH1C	10083	hgsc.bcm.edu	hg19	11	17527406	17527406	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	USH1C	NM_153676	exon19	c.T2104C	p.Y702H	GCCTGTAGATGAA	.	121.0	28.0	99.0	0.0	.	157	.	.	Atlas-SNP
NR1H3	10062	hgsc.bcm.edu	hg19	11	47281483	47281483	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	NR1H3	NM_001251934	exon3	c.A203T	p.E68V	CTGCAGAGCCCAC	.	238.0	55.0	180.0	0.0	.	52	.	.	Atlas-SNP
KBTBD4	55709	hgsc.bcm.edu	hg19	11	47594682	47594682	+	Silent	SNP	G	G	T	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	KBTBD4	NM_018095	exon4	c.C1405A	p.R469R	AAAGCCGGGTGAA	.	137.0	6.0	87.0	0.0	.	55	.	.	Atlas-SNP
ACAD8	27034	hgsc.bcm.edu	hg19	11	134131244	134131244	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	ACAD8	NM_014384	exon8	c.G917C	p.G306A	AGTTTGGAGAGCC	.	114.0	27.0	98.0	0.0	.	33	.	.	Atlas-SNP
WNK1	65125	hgsc.bcm.edu	hg19	12	922935	922935	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	WNK1	NM_001184985	exon2	c.G887A	p.C296Y	AGAAGTGCATTGT	.	110.0	18.0	87.0	0.0	.	403	.	.	Atlas-SNP
ART4	420	hgsc.bcm.edu	hg19	12	14995920	14995920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	ART4	NM_021071	exon1	c.C128T	p.P43L	TCTGTGGGTCTCT	.	95.0	4.0	82.0	0.0	.	27	.	.	Atlas-SNP
LIMA1	51474	hgsc.bcm.edu	hg19	12	50575756	50575756	+	Missense_Mutation	SNP	C	C	A	rs200141288	bycluster;alternate_allele	TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	LIMA1	NM_001113546	exon10	c.G1208T	p.R403L	AAGAGACGCTCCA	.	112.0	24.0	78.0	0.0	.	67	.	.	Atlas-SNP
TMEM5	10329	hgsc.bcm.edu	hg19	12	64202488	64202488	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	TMEM5	NM_014254	exon6	c.G948A	p.K316K	TCTTAAGAATTAC	.	101.0	29.0	66.0	0.0	.	35	.	.	Atlas-SNP
TCTN1	79600	hgsc.bcm.edu	hg19	12	111066708	111066708	+	Silent	SNP	T	T	C	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	TCTN1	NM_024549	exon4	c.T609C	p.T203T	TCCTACTGCTGCT	.	47.0	15.0	63.0	0.0	.	37	.	.	Atlas-SNP
RPH3A	22895	hgsc.bcm.edu	hg19	12	113306371	113306371	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	RPH3A	NM_001143854	exon8	c.C581A	p.P194H	CTGAGCCCAAGCA	.	66.0	20.0	50.0	0.0	.	98	.	.	Atlas-SNP
MED13L	23389	hgsc.bcm.edu	hg19	12	116446438	116446438	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	MED13L	NM_015335	exon10	c.A1780T	p.T594S	CCAGAGTAGACAA	.	77.0	23.0	55.0	0.0	.	193	.	.	Atlas-SNP
VPS33A	65082	hgsc.bcm.edu	hg19	12	122734446	122734446	+	Silent	SNP	G	G	C	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	VPS33A	NM_022916	exon6	c.C747G	p.L249L	ATCAATGAGTCCT	.	130.0	22.0	98.0	0.0	.	61	.	.	Atlas-SNP
DNAH10	196385	hgsc.bcm.edu	hg19	12	124360035	124360035	+	Silent	SNP	C	C	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	DNAH10	NM_207437	exon46	c.C7842A	p.T2614T	CCACACCTCGGTA	.	73.0	15.0	78.0	0.0	.	888	.	.	Atlas-SNP
SLC25A21	89874	hgsc.bcm.edu	hg19	14	37641486	37641486	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	SLC25A21	NM_030631	exon1	c.G70A	p.G24S	CCTTACCTGCAGA	.	283.0	58.0	181.0	0.0	.	24	.	.	Atlas-SNP
BCL11B	64919	hgsc.bcm.edu	hg19	14	99641568	99641568	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	BCL11B,colon,carcinoma,0,1	BCL11B	NM_138576	exon4	c.G1605C	p.E535D	CTCCTCCTCGTCC	.	32.0	2.0	19.0	0.0	.	108	.	.	Atlas-SNP
GOLGA6L1	283767	hgsc.bcm.edu	hg19	15	22742718	22742718	+	Missense_Mutation	SNP	T	T	A	rs77248890		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	GOLGA6L1,NS,carcinoma,0,3	GOLGA6L1	NM_001001413	exon8	c.T1103A	p.L368Q	GGAGGCTGGAGGA	.	22.0	6.0	11.0	1.0	.	20	.	T|0.875;A|0.125	Atlas-SNP
GNB5	10681	hgsc.bcm.edu	hg19	15	52416719	52416719	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	GNB5	NM_016194	exon12	c.C1127T	p.S376F	TCGGGGGAAACTC	.	132.0	25.0	101.0	0.0	.	28	.	.	Atlas-SNP
NTRK3	4916	hgsc.bcm.edu	hg19	15	88678582	88678582	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	NTRK3	NM_001243101	exon10	c.G954T	p.E318D	GCAGTGCTCCAGG	.	72.0	17.0	43.0	0.0	.	587	.	.	Atlas-SNP
HAGHL	84264	hgsc.bcm.edu	hg19	16	777615	777615	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	HAGHL	NM_032304	exon1	c.105+1G>T	.	AAGAGGGTGAGGG	.	106.0	29.0	82.0	0.0	.	18	.	.	Atlas-SNP
BRD7	29117	hgsc.bcm.edu	hg19	16	50357604	50357604	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	BRD7	NM_013263	exon12	c.A1337G	p.H446R	AACTCATGGATGC	.	74.0	18.0	63.0	0.0	.	61	.	.	Atlas-SNP
CNOT1	23019	hgsc.bcm.edu	hg19	16	58559196	58559196	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	CNOT1	NM_016284	exon46	c.C6671A	p.T2224N	GCCTGAGTCCCGA	.	89.0	21.0	41.0	0.0	.	359	.	.	Atlas-SNP
FTSJD1	55783	hgsc.bcm.edu	hg19	16	71318721	71318721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	FTSJD1	NM_018348	exon3	c.A1103G	p.H368R	TATTTATGAAAGA	.	142.0	41.0	133.0	0.0	.	70	.	.	Atlas-SNP
ZNF469	84627	hgsc.bcm.edu	hg19	16	88496981	88496981	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	ZNF469	NM_001127464	exon1	c.G3103T	p.D1035Y	AGGAAGGACCCCA	.	248.0	49.0	213.0	0.0	.	121	.	.	Atlas-SNP
CLUH	23277	hgsc.bcm.edu	hg19	17	2604933	2604933	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	.	NM_015229	exon5	c.C604T	p.L202L	GCTGCAGGGGACA	.	60.0	9.0	39.0	0.0	.	.	.	.	Atlas-SNP
ENO3	2027	hgsc.bcm.edu	hg19	17	4859417	4859417	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	ENO3	NM_001976	exon9	c.C1046A	p.S349X	TCGGCTCGGTGAC	.	72.0	11.0	46.0	0.0	.	36	.	.	Atlas-SNP
ZNF207	7756	hgsc.bcm.edu	hg19	17	30687931	30687931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	ZNF207	NM_003457	exon5	c.G496A	p.G166S	ATGCCAGGTGTTC	.	105.0	22.0	85.0	0.0	.	32	.	.	Atlas-SNP
AP2B1	163	hgsc.bcm.edu	hg19	17	34001338	34001338	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	AP2B1	NM_001030006	exon17	c.T2322A	p.N774K	CAAAAATAGGTAA	.	54.0	11.0	36.0	0.0	.	70	.	.	Atlas-SNP
FASN	2194	hgsc.bcm.edu	hg19	17	80043185	80043185	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	FASN	NM_004104	exon24	c.C4216T	p.P1406S	GGGTGGGCCGGCG	.	182.0	54.0	132.0	0.0	.	154	.	.	Atlas-SNP
SMCHD1	23347	hgsc.bcm.edu	hg19	18	2747624	2747624	+	Silent	SNP	T	T	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	SMCHD1	NM_015295	exon30	c.T3906A	p.L1302L	AAGTCTTACAAAA	.	265.0	54.0	193.0	0.0	.	88	.	.	Atlas-SNP
OSBPL1A	114876	hgsc.bcm.edu	hg19	18	21860862	21860862	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	OSBPL1A	NM_080597	exon15	c.A1225T	p.R409X	TTTCTCTAGAAGC	.	38.0	6.0	35.0	0.0	.	94	.	.	Atlas-SNP
CREB3L3	84699	hgsc.bcm.edu	hg19	19	4171378	4171378	+	Splice_Site	SNP	A	A	T	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	CREB3L3	NM_001271995	exon9	c.973-2A>T	.	TCCACCAGGTCCT	.	76.0	27.0	34.0	0.0	.	53	.	.	Atlas-SNP
TUBB4A	10382	hgsc.bcm.edu	hg19	19	6496156	6496156	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	TUBB4,NS,carcinoma,0,1	.	NM_006087	exon4	c.C354T	p.D118D	GACTACGTCCAGG	.	72.0	15.0	52.0	0.0	.	.	.	.	Atlas-SNP
NDUFA7	4701	hgsc.bcm.edu	hg19	19	8386229	8386229	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	NDUFA7	NM_005001	exon1	c.C14T	p.T5I	AGACGGGTGGCGG	.	90.0	16.0	58.0	0.0	.	11	.	.	Atlas-SNP
CEACAM18	729767	hgsc.bcm.edu	hg19	19	51983676	51983676	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	CEACAM18_ENST00000451626,NS,carcinoma,0,2	CEACAM18	NM_001080405	exon3	c.G325A	p.A109T	GTCGTGGCCCTGG	.	126.0	20.0	103.0	0.0	.	96	.	.	Atlas-SNP
NPEPL1	79716	hgsc.bcm.edu	hg19	20	57289000	57289000	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	NPEPL1	NM_024663	exon10	c.G1153A	p.A385T	CACGCCGCGGTGC	.	48.0	10.0	42.0	0.0	.	36	.	.	Atlas-SNP
COL20A1	57642	hgsc.bcm.edu	hg19	20	61945549	61945549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	COL20A1	NM_020882	exon19	c.G2484T	p.Q828H	GGGCCAGACAGGT	.	180.0	12.0	114.0	0.0	.	137	.	.	Atlas-SNP
MAGEE1	57692	hgsc.bcm.edu	hg19	X	75649655	75649655	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	MAGEE1	NM_020932	exon1	c.C1332A	p.D444E	CGTGGACTCAGAT	.	79.0	21.0	61.0	0.0	.	236	.	.	Atlas-SNP
GRIA3	2892	hgsc.bcm.edu	hg19	X	122387320	122387320	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	GRIA3	NM_000828	exon3	c.G435A	p.L145L	AGCCTTGAAGGGC	.	65.0	21.0	65.0	0.0	.	386	.	.	Atlas-SNP
PAX2	5076	hgsc.bcm.edu	hg19	10	102587329	102587330	+	Frame_Shift_Ins	INS	-	-	GG	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	PAX2_ENST00000428433,colon,carcinoma,0,2	PAX2	NM_003987	exon11	c.1207_1208insGG	p.R403fs	.	.	135.0	10.0	84.0	0.0	.	83	.	.	Atlas-INDEL
SV2B	9899	hgsc.bcm.edu	hg19	15	91832791	91832792	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.,2	SV2B	NM_014848	exon13	c.1749_1750insT	p.L583fs	.	.	66.0	11.0	56.0	0.0	.	98	.	.	Atlas-INDEL
BACH1	571	hgsc.bcm.edu	hg19	21	30699119	30699119	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	BACH1	NM_206866	exon3	c.973delC	p.L325fs	.	.	65.0	22.0	70.0	0.0	.	66	.	.	Atlas-INDEL
CCDC7	221016	hgsc.bcm.edu	hg19	10	32740800	32740801	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.,6	CCDC7	NM_145023	exon2	c.230_231insA	p.L77fs	.	.	181.0	48.0	150.0	0.0	.	47	.	.	Atlas-INDEL
ZCCHC8	55596	hgsc.bcm.edu	hg19	12	122983386	122983387	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	ZCCHC8	NM_017612	exon2	c.230_231del	p.77_77del	.	.	111.0	24.0	74.0	0.0	.	56	.	.	Atlas-INDEL
TNS3	64759	hgsc.bcm.edu	hg19	7	47451383	47451383	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	TNS3	NM_022748	exon13	c.666delC	p.N222fs	.	.	123.0	23.0	100.0	0.0	.	140	.	.	Atlas-INDEL
LAMB2	3913	hgsc.bcm.edu	hg19	3	49162791	49162814	+	In_Frame_Del	DEL	GGGAATCCCCACTGGCCACGCTGG	GGGAATCCCCACTGGCCACGCTGG	-	novel		TCGA-G3-AAV3-01A-11D-A36X-10	TCGA-G3-AAV3-10A-01D-A370-10	GGGAATCCCCACTGGCCACGCTGG	GGGAATCCCCACTGGCCACGCTGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2f5dc334-4cc1-4093-8189-205203b4b459	5594728a-7cd4-4fd6-862e-6701512130e3	.	LAMB2	NM_002292	exon19	c.2593_2616del	p.865_872del	.	.	164.0	17.0	125.0	0.0	.	156	.	.	Atlas-INDEL