Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm KIF21B 23046 hgsc.bcm.edu hg19 1 200945972 200945972 + Silent SNP G G A novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . KIF21B NM_001252102 exon32 c.C4375T p.L1459L CCGTCAGGCACAT . 33.0 13.0 52.0 0.0 . 208 . . Atlas-SNP ITPKB 3707 hgsc.bcm.edu hg19 1 226923399 226923399 + Silent SNP T T G novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . ITPKB NM_002221 exon2 c.A1761C p.G587G AGGGCTTCCCTGC . 40.0 15.0 40.0 0.0 . 158 . . Atlas-SNP GREB1 9687 hgsc.bcm.edu hg19 2 11716535 11716535 + Missense_Mutation SNP T T C novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . GREB1 NM_148903 exon5 c.T511C p.F171L ACGGAATTCTCCA . 165.0 37.0 147.0 0.0 . 308 . . Atlas-SNP FAHD2B 151313 hgsc.bcm.edu hg19 2 97751541 97751541 + Missense_Mutation SNP G G A novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . FAHD2B NM_199336 exon5 c.C580T p.R194C AGTCACGAGCACT . 98.0 44.0 137.0 0.0 . 34 . . Atlas-SNP RNF149 284996 hgsc.bcm.edu hg19 2 101911551 101911551 + Missense_Mutation SNP T T C novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . RNF149 NM_173647 exon2 c.A553G p.I185V CCCCTATGGTCAT . 66.0 14.0 89.0 0.0 . 25 . . Atlas-SNP STEAP3 55240 hgsc.bcm.edu hg19 2 120005515 120005515 + Silent SNP C C A rs372658109 alternate_allele TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . STEAP3 NM_182915 exon4 c.C783A p.P261P GCTGCCCGTGTCC . 43.0 21.0 32.0 0.0 . 44 . . Atlas-SNP FIGN 55137 hgsc.bcm.edu hg19 2 164468244 164468244 + Missense_Mutation SNP C C G novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 FIGN,NS,carcinoma,0,1 FIGN NM_018086 exon3 c.G98C p.R33P GGAGACCGAGTGG . 64.0 21.0 77.0 1.0 . 106 . . Atlas-SNP FN1 2335 hgsc.bcm.edu hg19 2 216256381 216256381 + Missense_Mutation SNP G G T novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . FN1 NM_212482 exon26 c.C4226A p.P1409H TCTGAAGGAGAAA . 66.0 21.0 44.0 0.0 . 521 . . Atlas-SNP PRSS50 29122 hgsc.bcm.edu hg19 3 46755757 46755757 + Missense_Mutation SNP C C A novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . PRSS50 NM_013270 exon4 c.G705T p.K235N ATGGTCCTTCAAC . 39.0 20.0 31.0 0.0 . 35 . . Atlas-SNP CHDH 55349 hgsc.bcm.edu hg19 3 53851908 53851908 + Missense_Mutation SNP T T C novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . CHDH NM_018397 exon9 c.A1681G p.I561V TCATGATTGTGGG . 56.0 25.0 88.0 0.0 . 34 . . Atlas-SNP TMPRSS7 344805 hgsc.bcm.edu hg19 3 111764772 111764772 + Missense_Mutation SNP G G C novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . TMPRSS7 NM_001042575 exon4 c.G334C p.D112H GACATGGACTCTG . 151.0 45.0 177.0 0.0 . 126 . . Atlas-SNP PTX3 5806 hgsc.bcm.edu hg19 3 157160183 157160183 + Missense_Mutation SNP G G A novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . PTX3 NM_002852 exon3 c.G561A p.M187I CCCAATGCGTTCC . 34.0 11.0 27.0 0.0 . 27 . . Atlas-SNP SI 6476 hgsc.bcm.edu hg19 3 164737493 164737493 + Missense_Mutation SNP G G T novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . SI NM_001041 exon28 c.C3320A p.P1107Q TCTGATGGCAGGC . 73.0 23.0 84.0 0.0 . 500 . . Atlas-SNP TP63 8626 hgsc.bcm.edu hg19 3 189526152 189526152 + Missense_Mutation SNP C C T novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . TP63 NM_001114979 exon4 c.C416T p.A139V ACCACGCGCAGAA . 59.0 15.0 62.0 0.0 . 187 . . Atlas-SNP WFS1 7466 hgsc.bcm.edu hg19 4 6303650 6303650 + Missense_Mutation SNP A A C novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . WFS1 NM_001145853 exon8 c.A2128C p.T710P CGCGTGACTGACA . 34.0 11.0 31.0 0.0 . 71 . . Atlas-SNP GUF1 60558 hgsc.bcm.edu hg19 4 44693809 44693809 + Missense_Mutation SNP T T C novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . GUF1 NM_021927 exon13 c.T1606C p.Y536H TCTGGATATGCTA . 41.0 15.0 59.0 0.0 . 72 . . Atlas-SNP NFXL1 152518 hgsc.bcm.edu hg19 4 47850329 47850329 + Nonsense_Mutation SNP T T A novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . NFXL1 NM_152995 exon23 c.A2587T p.R863X TCAGTCTGTTTTC . 114.0 36.0 146.0 0.0 . 79 . . Atlas-SNP FRAS1 80144 hgsc.bcm.edu hg19 4 79295351 79295351 + Missense_Mutation SNP G G T novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . FRAS1 NM_001166133 exon25 c.G3097T p.V1033F CAGTGTGTCCAGG . 33.0 21.0 59.0 0.0 . 779 . . Atlas-SNP DSPP 1834 hgsc.bcm.edu hg19 4 88535262 88535262 + Missense_Mutation SNP A A G novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . DSPP NM_014208 exon5 c.A1448G p.N483S GTGACAATAACAG . 37.0 24.0 87.0 0.0 . 174 . . Atlas-SNP NPY5R 4889 hgsc.bcm.edu hg19 4 164272303 164272303 + Missense_Mutation SNP C C T rs146231711 TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . NPY5R NM_006174 exon4 c.C878T p.T293I AGAAGACAGCATG . 15.0 9.0 55.0 0.0 . 101 . C|1.000;T|0.000 Atlas-SNP HELT 391723 hgsc.bcm.edu hg19 4 185941802 185941802 + Missense_Mutation SNP C C T novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . HELT NM_001029887 exon4 c.C860T p.A287V GCCCAGCGCAGCA . 16.0 13.0 11.0 0.0 . 34 . . Atlas-SNP GPR98 84059 hgsc.bcm.edu hg19 5 89948314 89948314 + Missense_Mutation SNP C C T novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . GPR98 NM_032119 exon19 c.C3568T p.H1190Y ATTCTCCATGCTT . 72.0 39.0 148.0 0.0 . 605 . . Atlas-SNP SLCO6A1 133482 hgsc.bcm.edu hg19 5 101813521 101813521 + Missense_Mutation SNP C C T novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . SLCO6A1 NM_173488 exon3 c.G661A p.G221S ATATACCACTGCT . 25.0 17.0 95.0 0.0 . 153 . . Atlas-SNP AQPEP 0 hgsc.bcm.edu hg19 5 115323605 115323605 + Missense_Mutation SNP G G C novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . . NM_173800 exon4 c.G1074C p.L358F GGATTTGTTTAAT . 95.0 13.0 186.0 0.0 . . . . Atlas-SNP PCDHA7 56141 hgsc.bcm.edu hg19 5 140215989 140215989 + Missense_Mutation SNP A A T rs370529939 alternate_allele TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . PCDHA7 NM_031852 exon1 c.A2021T p.Q674L GCGGCCAGGCACC . 24.0 15.0 26.0 0.0 . 367 . . Atlas-SNP PCDHB10 56126 hgsc.bcm.edu hg19 5 140573688 140573688 + Nonsense_Mutation SNP C C A novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . PCDHB10 NM_018930 exon1 c.C1563A p.Y521X GGACTACGAGGCC . 59.0 17.0 71.0 0.0 . 177 . . Atlas-SNP DDR1 780 hgsc.bcm.edu hg19 6 30866689 30866689 + Missense_Mutation SNP G G T novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . DDR1 NM_013994 exon16 c.G2494T p.V832L AGTGACGTGTGGG . 78.0 31.0 83.0 0.0 . 213 . . Atlas-SNP ITPR3 3710 hgsc.bcm.edu hg19 6 33639857 33639857 + Missense_Mutation SNP T T C novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . ITPR3 NM_002224 exon22 c.T2780C p.M927T CCACCATGGTGCT . 31.0 11.0 33.0 0.0 . 409 . . Atlas-SNP KHDC3L 154288 hgsc.bcm.edu hg19 6 74072885 74072885 + Missense_Mutation SNP G G T novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . . NM_001017361 exon2 c.G237T p.L79F TCGATTGGACCCT . 32.0 10.0 43.0 0.0 . . . . Atlas-SNP KHDC3L 154288 hgsc.bcm.edu hg19 6 74072886 74072886 + Missense_Mutation SNP G G T novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . . NM_001017361 exon2 c.G238T p.D80Y CGATTGGACCCTA . 33.0 11.0 43.0 0.0 . . . . Atlas-SNP IMPG1 3617 hgsc.bcm.edu hg19 6 76720891 76720891 + Missense_Mutation SNP T T A novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . IMPG1 NM_001563 exon8 c.A858T p.L286F AAATCCTAACACA . 86.0 36.0 116.0 0.0 . 143 . . Atlas-SNP MAP3K7 6885 hgsc.bcm.edu hg19 6 91269811 91269811 + Missense_Mutation SNP C C A novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . MAP3K7 NM_145333 exon5 c.G466T p.D156Y TCAGGTCCCTGTG . 93.0 46.0 169.0 0.0 . 100 . . Atlas-SNP EPHA7 2045 hgsc.bcm.edu hg19 6 94120578 94120578 + Missense_Mutation SNP C C T novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . EPHA7 NM_004440 exon3 c.G473A p.G158D AGGTCACCTTGGG . 80.0 28.0 131.0 0.0 . 251 . . Atlas-SNP ASCC3 10973 hgsc.bcm.edu hg19 6 101166124 101166124 + Missense_Mutation SNP C C T novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . ASCC3 NM_006828 exon12 c.G1906A p.E636K TGGATTCCACCTA . 49.0 19.0 75.0 0.0 . 205 . . Atlas-SNP TAAR1 134864 hgsc.bcm.edu hg19 6 132966704 132966704 + Missense_Mutation SNP T T C novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . TAAR1 NM_138327 exon1 c.A439G p.S147G TCCAACTAATGAA . 49.0 17.0 77.0 0.0 . 41 . . Atlas-SNP ABCA13 154664 hgsc.bcm.edu hg19 7 48431663 48431663 + Nonsense_Mutation SNP G G T novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 ABCA13_ENST00000435803,trunk,malignant_melanoma,0,2 ABCA13 NM_152701 exon38 c.G11800T p.E3934X GTCCGGGAACATT . 56.0 21.0 67.0 0.0 . 1192 . . Atlas-SNP PCLO 27445 hgsc.bcm.edu hg19 7 82531973 82531973 + Missense_Mutation SNP C C T novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . PCLO NM_014510 exon9 c.G13522A p.V4508I CTGAAACTGTGTG . 78.0 27.0 119.0 0.0 . 1506 . . Atlas-SNP HEPACAM2 253012 hgsc.bcm.edu hg19 7 92837990 92837990 + Missense_Mutation SNP T T A novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . HEPACAM2 NM_001039372 exon4 c.A915T p.K305N GGCTACTTTCTCA . 97.0 32.0 134.0 0.0 . 132 . . Atlas-SNP TNKS 8658 hgsc.bcm.edu hg19 8 9538246 9538246 + Missense_Mutation SNP A A T novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . TNKS NM_003747 exon5 c.A1043T p.E348V GTAATGAAGAAAA . 121.0 46.0 143.0 0.0 . 198 . . Atlas-SNP GATA4 2626 hgsc.bcm.edu hg19 8 11615852 11615852 + Silent SNP C C T novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . GATA4 NM_002052 exon7 c.C1197T p.V399V CCCTGTCCTCTCG . 40.0 15.0 43.0 0.0 . 29 . . Atlas-SNP ADAM18 8749 hgsc.bcm.edu hg19 8 39505913 39505913 + Missense_Mutation SNP G G C novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . ADAM18 NM_014237 exon12 c.G1097C p.R366T ACTATAGATATTT . 163.0 12.0 146.0 0.0 . 169 . . Atlas-SNP ZFHX4 79776 hgsc.bcm.edu hg19 8 77768145 77768145 + Missense_Mutation SNP G G A novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . ZFHX4 NM_024721 exon10 c.G8988A p.M2996I TTTCATGATCAAT . 52.0 20.0 55.0 0.0 . 878 . . Atlas-SNP INSL4 3641 hgsc.bcm.edu hg19 9 5231621 5231621 + Missense_Mutation SNP C C A novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . INSL4 NM_002195 exon1 c.C98A p.P33H GTGGTCCCCGATT . 48.0 11.0 55.0 0.0 . 20 . . Atlas-SNP DNAJB5 25822 hgsc.bcm.edu hg19 9 34993331 34993331 + Missense_Mutation SNP A A C novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . DNAJB5 NM_001135004 exon3 c.A443C p.D148A ACCCAGACAAGAA . 43.0 16.0 46.0 0.0 . 69 . . Atlas-SNP TLE4 7091 hgsc.bcm.edu hg19 9 82267541 82267541 + Missense_Mutation SNP C C A novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . TLE4 NM_007005 exon7 c.C424A p.H142N CATGGACATGGTC . 69.0 16.0 88.0 0.0 . 187 . . Atlas-SNP ZCCHC6 79670 hgsc.bcm.edu hg19 9 88967620 88967620 + Silent SNP C C A novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . ZCCHC6 NM_024617 exon2 c.G495T p.T165T TTCTGACGTGGTT . 140.0 37.0 201.0 0.0 . 105 . . Atlas-SNP SPATA31C2 645961 hgsc.bcm.edu hg19 9 90746827 90746827 + Silent SNP A A G novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . . NM_001166137 exon4 c.T1125C p.T375T TACTCCAGTGTTC . 73.0 38.0 87.0 0.0 . . . . Atlas-SNP TSTD2 158427 hgsc.bcm.edu hg19 9 100365038 100365038 + Missense_Mutation SNP A A G novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . TSTD2 NM_139246 exon10 c.T1264C p.C422R CTCCACAGTATGA . 63.0 26.0 91.0 0.0 . 42 . . Atlas-SNP COL5A1 1289 hgsc.bcm.edu hg19 9 137630354 137630354 + Missense_Mutation SNP G G A novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . COL5A1 NM_000093 exon10 c.G1424A p.G475D CAGAAGGCCCCGC . 40.0 26.0 37.0 0.0 . 323 . . Atlas-SNP NELFB 25920 hgsc.bcm.edu hg19 9 140158810 140158810 + Splice_Site SNP G G T novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . . NM_015456 exon6 c.896+1G>T . GCTGGGGTGAGGG . 30.0 19.0 22.0 0.0 . . . . Atlas-SNP DIP2C 22982 hgsc.bcm.edu hg19 10 375432 375432 + Missense_Mutation SNP A A G novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . DIP2C NM_014974 exon30 c.T3694C p.S1232P AGTAGGAGCAAAA . 16.0 7.0 30.0 0.0 . 195 . . Atlas-SNP TRDMT1 1787 hgsc.bcm.edu hg19 10 17202313 17202313 + Silent SNP A A G novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . TRDMT1 NM_004412 exon6 c.T450C p.S150S GGTTGGAGATAAT . 121.0 38.0 198.0 0.0 . 46 . . Atlas-SNP FAM13C 220965 hgsc.bcm.edu hg19 10 61028335 61028335 + Missense_Mutation SNP A A G novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . FAM13C NM_198215 exon8 c.T920C p.F307S TGTTCAAATTTTT . 66.0 13.0 92.0 0.0 . 124 . . Atlas-SNP SORCS1 114815 hgsc.bcm.edu hg19 10 108459041 108459041 + Silent SNP G G A novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . SORCS1 NM_001206572 exon9 c.C1344T p.F448F CAGGGTGAAGTAG . 51.0 19.0 92.0 0.0 . 534 . . Atlas-SNP OR4C46 119749 hgsc.bcm.edu hg19 11 51515655 51515655 + Missense_Mutation SNP G G T novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . OR4C46 NM_001004703 exon1 c.G374T p.C125F CCATCTGCAAGCC . 70.0 38.0 100.0 0.0 . 96 . . Atlas-SNP PPFIBP1 8496 hgsc.bcm.edu hg19 12 27787982 27787982 + Missense_Mutation SNP A A T novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . PPFIBP1 NM_003622 exon4 c.A204T p.E68D GAAAGAAGGCTTG . 91.0 33.0 78.0 0.0 . 153 . . Atlas-SNP IPO8 10526 hgsc.bcm.edu hg19 12 30816574 30816574 + Silent SNP A A C novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . IPO8 NM_006390 exon14 c.T1443G p.L481L TGCATGAAGTACC . 28.0 13.0 22.0 0.0 . 105 . . Atlas-SNP XPOT 11260 hgsc.bcm.edu hg19 12 64814173 64814173 + Missense_Mutation SNP C C A novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . XPOT NM_007235 exon8 c.C715A p.L239I GAAGTTCTACGGG . 72.0 25.0 76.0 0.0 . 105 . . Atlas-SNP SLC6A15 55117 hgsc.bcm.edu hg19 12 85277689 85277689 + Silent SNP G G T novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . SLC6A15 NM_018057 exon5 c.C705A p.A235A GACCCAGGCAGCC . 48.0 21.0 60.0 0.0 . 159 . . Atlas-SNP ACTR6 64431 hgsc.bcm.edu hg19 12 100594687 100594687 + Missense_Mutation SNP G G A novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . ACTR6 NM_022496 exon1 c.G58A p.E20K AGCCATGAAAATG . 43.0 11.0 43.0 0.0 . 29 . . Atlas-SNP SH2B3 10019 hgsc.bcm.edu hg19 12 111885820 111885820 + Missense_Mutation SNP T T C novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . SH2B3 NM_005475 exon8 c.T1442C p.L481P TCTCCCTTCCTCA . 32.0 9.0 47.0 0.0 . 62 . . Atlas-SNP TMEM132B 114795 hgsc.bcm.edu hg19 12 125834213 125834213 + Missense_Mutation SNP C C T novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . TMEM132B NM_052907 exon2 c.C268T p.P90S TATGGCCCATTTT . 67.0 20.0 51.0 0.0 . 207 . . Atlas-SNP FREM2 341640 hgsc.bcm.edu hg19 13 39263789 39263789 + Missense_Mutation SNP G G T rs7327915 bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . FREM2 NM_207361 exon1 c.G2308T p.V770L TCAGTCGTGGTGA . 35.0 18.0 52.0 0.0 . 385 . G|0.960;A|0.040 Atlas-SNP DYNC1H1 1778 hgsc.bcm.edu hg19 14 102446826 102446826 + Silent SNP T T G novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . DYNC1H1 NM_001376 exon5 c.T900G p.T300T CCTGACTCTGGAT . 28.0 11.0 50.0 0.0 . 395 . . Atlas-SNP PLD4 122618 hgsc.bcm.edu hg19 14 105398614 105398614 + Missense_Mutation SNP G G T novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . PLD4 NM_138790 exon10 c.G1243T p.V415L GTGCCGGTGGGGA . 34.0 13.0 39.0 0.0 . 46 . . Atlas-SNP RYR3 6263 hgsc.bcm.edu hg19 15 33895514 33895514 + Missense_Mutation SNP G G T novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . RYR3 NM_001243996 exon18 c.G2113T p.V705F AATGGTGTTGGTG . 41.0 29.0 100.0 0.0 . 760 . . Atlas-SNP NGFR 4804 hgsc.bcm.edu hg19 17 47587941 47587941 + Missense_Mutation SNP G G C novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . NGFR NM_002507 exon4 c.G736C p.G246R ACCCGAGGCACCA . 30.0 15.0 33.0 0.0 . 46 . . Atlas-SNP ABCA5 23461 hgsc.bcm.edu hg19 17 67287403 67287403 + Silent SNP C C T novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . ABCA5 NM_018672 exon11 c.G1560A p.K520K TGTACTCTTTCCT . 58.0 18.0 101.0 0.0 . 162 . . Atlas-SNP ITGB4 3691 hgsc.bcm.edu hg19 17 73723340 73723340 + Missense_Mutation SNP G G T rs146966502 bycluster TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . ITGB4 NM_001005731 exon3 c.G145T p.A49S GACTGCGCCTACT . 36.0 11.0 46.0 0.0 . 165 . A|0.000;G|1.000 Atlas-SNP SEPT9 10801 hgsc.bcm.edu hg19 17 75303253 75303253 + Missense_Mutation SNP G G C novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . SEPT9 NM_001113491 exon2 c.G50C p.R17P GGCTCCGGAGGCT . 33.0 17.0 42.0 0.0 . 105 . . Atlas-SNP CBX4 8535 hgsc.bcm.edu hg19 17 77808471 77808471 + Missense_Mutation SNP G G A rs138355116 TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 CBX4,abdomen,malignant_melanoma,0,1 CBX4 NM_003655 exon5 c.C970T p.P324S TGGGCGGCGCCTC . 27.0 11.0 39.0 0.0 . 40 . . Atlas-SNP VAV1 7409 hgsc.bcm.edu hg19 19 6833726 6833726 + Missense_Mutation SNP C C A novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . VAV1 NM_005428 exon18 c.C1713A p.F571L AGATTTCCCAGGA . 28.0 15.0 36.0 0.0 . 140 . . Atlas-SNP RYR1 6261 hgsc.bcm.edu hg19 19 38960151 38960151 + Missense_Mutation SNP G G A novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 RYR1,right_lower_lobe,carcinoma,0,1 RYR1 NM_001042723 exon27 c.G3763A p.E1255K CACTATGAGGTAA . 19.0 13.0 29.0 0.0 . 708 . . Atlas-SNP RPL18 6141 hgsc.bcm.edu hg19 19 49121059 49121059 + Missense_Mutation SNP G G T novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . RPL18 NM_000979 exon2 c.C79A p.L27M CCAACAGCCTCAG . 42.0 27.0 46.0 0.0 . 9 . . Atlas-SNP ZNF28 7576 hgsc.bcm.edu hg19 19 53303883 53303883 + Silent SNP A A G novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . ZNF28 NM_006969 exon4 c.T1215C p.H405H TCCAGTATGAATC . 46.0 30.0 52.0 0.0 . 191 . . Atlas-SNP LENG8 114823 hgsc.bcm.edu hg19 19 54966690 54966690 + Silent SNP G G A novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . LENG8 NM_052925 exon8 c.G969A p.A323A GCAGGCGCGGCTG . 22.0 8.0 25.0 0.0 . 73 . . Atlas-SNP ZSCAN5B 342933 hgsc.bcm.edu hg19 19 56704398 56704398 + Silent SNP T T A novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . ZSCAN5B NM_001080456 exon1 c.A24T p.S8S ACCCCATGAGAGT . 38.0 6.0 46.0 0.0 . 160 . . Atlas-SNP ZNF582 147948 hgsc.bcm.edu hg19 19 56896171 56896171 + Silent SNP C C T novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . ZNF582 NM_144690 exon5 c.G615A p.G205G GGCCTTCCCACAT . 70.0 16.0 70.0 0.0 . 56 . . Atlas-SNP TTLL12 23170 hgsc.bcm.edu hg19 22 43575637 43575637 + Silent SNP G G A novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . TTLL12 NM_015140 exon5 c.C828T p.A276A GTGCTCGGCGGGC . 20.0 9.0 24.0 0.0 . 50 . . Atlas-SNP ND3 0 hgsc.bcm.edu hg19 MT 10086 10086 + Missense_Mutation SNP A A C novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . . ENST00000361227 exon1 c.A28C p.N10H ATAATCAACACCC . 471.0 67.0 152.0 0.0 . . . . Atlas-SNP SPHK1 8877 hgsc.bcm.edu hg19 17 74382080 74382096 + Frame_Shift_Del DEL GGCGTGCTCCCGCGGCC GGCGTGCTCCCGCGGCC - novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 GGCGTGCTCCCGCGGCC GGCGTGCTCCCGCGGCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . SPHK1 NM_182965 exon3 c.282_298del p.94_100del . . 26.0 10.0 32.0 0.0 . 24 . . Atlas-INDEL SLCO1C1 53919 hgsc.bcm.edu hg19 12 20893142 20893145 + Frame_Shift_Del DEL GGAA GGAA - novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 GGAA GGAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . SLCO1C1 NM_017435 exon12 c.1572_1575del p.524_525del . . 77.0 28.0 99.0 0.0 . 216 . . Atlas-Indel,Pindel TOB1 10140 hgsc.bcm.edu hg19 17 48940660 48940661 + Frame_Shift_Ins INS - - GC novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . TOB1 NM_005749 exon2 c.719_720insGC p.P240fs . . 29.0 10.0 36.0 0.0 . 40 . . Atlas-INDEL SYNE2 23224 hgsc.bcm.edu hg19 14 64593080 64593089 + Frame_Shift_Del DEL TAAAAAATTG TAAAAAATTG - novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 TAAAAAATTG TAAAAAATTG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . SYNE2 NM_182914 exon72 c.13589_13598del p.4530_4533del . . 58.0 18.0 65.0 0.0 . 577 . . Atlas-Indel,Pindel MYO3A 53904 hgsc.bcm.edu hg19 10 26462717 26462717 + Frame_Shift_Del DEL C C - novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . MYO3A NM_017433 exon30 c.3523delA p.T1175fs . . 59.0 27.0 73.0 0.0 . 371 . . Atlas-Indel,Pindel TNKS1BP1 85456 hgsc.bcm.edu hg19 11 57080487 57080489 + In_Frame_Del DEL CCC CCC - novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 CCC CCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . TNKS1BP1 NM_033396 exon5 c.1674_1676del p.558_559del . . 43.0 15.0 68.0 0.0 . 148 . . Atlas-Indel,Pindel ZNF845 91664 hgsc.bcm.edu hg19 19 53855612 53855612 + Frame_Shift_Del DEL G G - novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . ZNF845 NM_138374 exon4 c.1683delT p.R561fs . . 45.0 25.0 52.0 0.0 . 101 . . Atlas-Indel,Pindel HSP90AA1 3320 hgsc.bcm.edu hg19 14 102548666 102548670 + Frame_Shift_Del DEL GTTGA GTTGA - novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 GTTGA GTTGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 . HSP90AA1 NM_001017963 exon11 c.2234_2238del p.745_746del . . 63.0 18.0 82.0 0.0 . 65 . . Pindel TP53 7157 hgsc.bcm.edu hg19 17 7578264 7578270 + Frame_Shift_Del DEL GATAAGA GATAAGA - novel TCGA-G3-A7M9-01A-23D-A34Z-10 TCGA-G3-A7M9-10A-01D-A34Z-10 GATAAGA GATAAGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6df05259-d701-492f-ab3f-5fc66ecb1c34 546c2c7d-b949-4ef6-96c8-9f2479352bf3 TP53_ENST00000545858,NS,adenocarcinoma,0,1 TP53 NM_001126112 exon6 c.580_586del p.194_196del . . 24.0 10.0 60.0 0.0 . 33396 . . Pindel