Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
PAPPA2	60676	hgsc.bcm.edu	hg19	1	176709306	176709306	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	PAPPA2,caecum,carcinoma,0,2	PAPPA2	NM_020318	exon14	c.C4125T	p.D1375D	AGAGGACGAGGGG	.	69.0	9.0	81.0	0.0	.	665	.	.	Atlas-SNP
ASPM	259266	hgsc.bcm.edu	hg19	1	197071915	197071915	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	ASPM	NM_018136	exon18	c.G6466C	p.G2156R	TTTTACCTTGATA	.	51.0	18.0	57.0	0.0	.	444	.	.	Atlas-SNP
PLEKHA6	22874	hgsc.bcm.edu	hg19	1	204214797	204214797	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	PLEKHA6	NM_014935	exon14	c.G1978T	p.E660X	GCCCCTCCATCAC	.	34.0	11.0	35.0	0.0	.	115	.	.	Atlas-SNP
LRPPRC	10128	hgsc.bcm.edu	hg19	2	44209519	44209519	+	Silent	SNP	A	A	G	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	LRPPRC	NM_133259	exon2	c.T204C	p.I68I	CTCTTGAATATCT	.	207.0	12.0	253.0	0.0	.	105	.	.	Atlas-SNP
BCL11A	53335	hgsc.bcm.edu	hg19	2	60687855	60687855	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	BCL11A	NM_018014	exon4	c.G2192A	p.G731D	GGCCTGCCCGGGC	.	47.0	12.0	54.0	0.0	.	298	.	.	Atlas-SNP
PIK3CA	5290	hgsc.bcm.edu	hg19	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	bycluster	TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	PIK3CA_ENST00000263967,NS,adenocarcinoma,0,2044	PIK3CA	NM_006218	exon21	c.A3140G	p.H1047R	ATGCACATCATGG	.	77.0	22.0	93.0	0.0	.	8460	.	.	Atlas-SNP
GRIA2	2891	hgsc.bcm.edu	hg19	4	158242731	158242731	+	Missense_Mutation	SNP	G	G	T	rs147349807		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	GRIA2	NM_000826	exon6	c.G862T	p.A288S	CCTGGAGCTCACA	.	81.0	23.0	109.0	0.0	.	358	.	G|1.000;T|0.000	Atlas-SNP
NSUN2	54888	hgsc.bcm.edu	hg19	5	6602579	6602579	+	Silent	SNP	A	A	G	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	NSUN2	NM_017755	exon18	c.T1992C	p.D664D	CGCAGAATCTGGT	.	72.0	25.0	91.0	0.0	.	82	.	.	Atlas-SNP
AHNAK	79026	hgsc.bcm.edu	hg19	11	62286773	62286773	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	AHNAK	NM_001620	exon5	c.A15116T	p.K5039I	CCCTGTTTTTTGG	.	126.0	28.0	137.0	0.0	.	532	.	.	Atlas-SNP
UTP20	27340	hgsc.bcm.edu	hg19	12	101679570	101679570	+	Silent	SNP	T	T	C	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	UTP20	NM_014503	exon4	c.T237C	p.N79N	ATTCAATCAGTTG	.	89.0	32.0	85.0	0.0	.	222	.	.	Atlas-SNP
PTGDR	5729	hgsc.bcm.edu	hg19	14	52735240	52735240	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	PTGDR	NM_000953	exon1	c.G708A	p.P236P	GCACCCGCGCTCC	.	48.0	12.0	34.0	0.0	.	58	.	.	Atlas-SNP
PGBD4	161779	hgsc.bcm.edu	hg19	15	34394935	34394935	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	PGBD4	NM_152595	exon1	c.A203C	p.D68A	CAAGTGACTCAGG	.	64.0	25.0	63.0	0.0	.	58	.	.	Atlas-SNP
LRRC49	54839	hgsc.bcm.edu	hg19	15	71329548	71329548	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	LRRC49	NM_001199017	exon15	c.C1749T	p.S583S	AGAATCCAAAGGA	.	349.0	31.0	407.0	0.0	.	73	.	.	Atlas-SNP
CTC1	80169	hgsc.bcm.edu	hg19	17	8139600	8139600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	CTC1	NM_025099	exon6	c.G853A	p.E285K	GCAGTTCTGTCAG	.	36.0	7.0	39.0	0.0	.	75	.	.	Atlas-SNP
HOXB7	3217	hgsc.bcm.edu	hg19	17	46688035	46688035	+	Silent	SNP	C	C	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	HOXB7	NM_004502	exon1	c.G246T	p.P82P	GGAACTCGGCTCG	.	127.0	34.0	156.0	0.0	.	15	.	.	Atlas-SNP
APOH	350	hgsc.bcm.edu	hg19	17	64210603	64210603	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	APOH	NM_000042	exon7	c.A950C	p.D317A	GTGCCATCTATAC	.	130.0	9.0	197.0	0.0	.	45	.	.	Atlas-SNP
FZR1	51343	hgsc.bcm.edu	hg19	19	3532454	3532454	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	FZR1	NM_001136198	exon10	c.C1048T	p.Q350X	GTGCAGCAGTACA	.	51.0	18.0	68.0	0.0	.	42	.	.	Atlas-SNP
INSR	3643	hgsc.bcm.edu	hg19	19	7120659	7120659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	INSR	NM_000208	exon20	c.G3631A	p.G1211R	AGACCCCATCCTT	.	88.0	37.0	110.0	0.0	.	265	.	.	Atlas-SNP
KIAA1210	57481	hgsc.bcm.edu	hg19	X	118281508	118281508	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	KIAA1210	NM_020721	exon2	c.A338G	p.D113G	GCCAGATCCCCAA	.	62.0	9.0	55.0	0.0	.	171	.	.	Atlas-SNP
COX2	5743	hgsc.bcm.edu	hg19	MT	7706	7706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	.	ENST00000361739	exon1	c.G121A	p.A41T	CTGTATGCCCTTT	.	720.0	690.0	25.0	0.0	.	.	.	.	Atlas-SNP
COX2	5743	hgsc.bcm.edu	hg19	MT	7928	7928	+	Nonsense_Mutation	SNP	G	G	A	rs78857533	bycluster;alternate_allele	TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	.	ENST00000361739	exon1	c.G343A	p.G115X	TACGGCGGACTAA	.	618.0	27.0	27.0	0.0	.	.	.	T|1.000;|0.000	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	13406	13406	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	.	ENST00000361567	exon1	c.G1070A	p.R357Q	ATATTCGAAAAAT	.	653.0	628.0	17.0	0.0	.	.	.	.	Atlas-SNP
APOB	338	hgsc.bcm.edu	hg19	2	21230621	21230625	+	Frame_Shift_Del	DEL	GAAAA	GAAAA	-	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	GAAAA	GAAAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	APOB	NM_000384	exon26	c.9116_9120del	p.3039_3040del	.	.	120.0	38.0	161.0	0.0	.	761	.	.	Atlas-Indel,Pindel