Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm LCK 3932 hgsc.bcm.edu hg19 1 32740006 32740006 + Missense_Mutation SNP C C G novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . LCK NM_005356 exon2 c.C76G p.P26A CATTATCCCATAG . 95.0 46.0 79.0 0.0 . 124 . . Atlas-SNP GTF2B 2959 hgsc.bcm.edu hg19 1 89325566 89325566 + Silent SNP T T C novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . GTF2B NM_001514 exon5 c.A534G p.K178K CTTACCTTTAAAT . 68.0 28.0 50.0 0.0 . 32 . . Atlas-SNP COL11A1 1301 hgsc.bcm.edu hg19 1 103548452 103548452 + Missense_Mutation SNP G G C novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 COL11A1_ENST00000370096,NS,carcinoma,0,2 COL11A1 NM_001190709 exon2 c.C183G p.C61W GTTTGTGCAAAAT . 62.0 25.0 47.0 0.0 . 972 . . Atlas-SNP PHGDH 26227 hgsc.bcm.edu hg19 1 120284487 120284487 + Missense_Mutation SNP C C A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . PHGDH NM_006623 exon10 c.C1176A p.N392K GGTGAACGCTAAG . 43.0 15.0 50.0 0.0 . 51 . . Atlas-SNP PDZK1 5174 hgsc.bcm.edu hg19 1 145748546 145748546 + Missense_Mutation SNP A A G novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . PDZK1 NM_002614 exon4 c.A419G p.K140R TCGTGAAGGAAGG . 467.0 268.0 284.0 0.0 . 15 . . Atlas-SNP HIST2H2BE 8349 hgsc.bcm.edu hg19 1 149858163 149858163 + Missense_Mutation SNP C C A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 HIST2H2BE,NS,carcinoma,0,1 HIST2H2BE NM_003528 exon1 c.G28T p.A10S TAGGGGCCGGAGC . 192.0 59.0 125.0 1.0 . 33 . . Atlas-SNP FLG 2312 hgsc.bcm.edu hg19 1 152282595 152282595 + Silent SNP G G T novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . FLG NM_002016 exon3 c.C4767A p.R1589R TCCCTGGCGCCTG . 142.0 39.0 136.0 0.0 . 900 . . Atlas-SNP LAMC1 3915 hgsc.bcm.edu hg19 1 183111767 183111767 + Missense_Mutation SNP G G A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . LAMC1 NM_002293 exon28 c.G4672A p.V1558M AGGAAAGTGTCTG . 125.0 37.0 71.0 0.0 . 176 . . Atlas-SNP PLA2G4A 5321 hgsc.bcm.edu hg19 1 186839647 186839647 + Missense_Mutation SNP G G A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . PLA2G4A NM_024420 exon3 c.G114A p.M38I TGACATGCGTAAG . 113.0 30.0 57.0 0.0 . 125 . . Atlas-SNP PLA2G4A 5321 hgsc.bcm.edu hg19 1 186839648 186839648 + Missense_Mutation SNP C C A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . PLA2G4A NM_024420 exon3 c.C115A p.L39I GACATGCGTAAGT . 112.0 30.0 55.0 0.0 . 125 . . Atlas-SNP FAM5C 339479 hgsc.bcm.edu hg19 1 190067609 190067609 + Missense_Mutation SNP G G T novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . FAM5C NM_199051 exon8 c.C1840A p.L614M TCCCCAGAGTTAA . 73.0 21.0 67.0 0.0 . 343 . . Atlas-SNP TTC13 79573 hgsc.bcm.edu hg19 1 231096999 231096999 + Missense_Mutation SNP A A C novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . TTC13 NM_001122835 exon2 c.T322G p.S108A AGGGTGATGATCC . 106.0 27.0 67.0 0.0 . 74 . . Atlas-SNP OR6F1 343169 hgsc.bcm.edu hg19 1 247875237 247875237 + Missense_Mutation SNP A A G novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . OR6F1 NM_001005286 exon1 c.T821C p.V274A ACGTGGACAGCTT . 93.0 30.0 69.0 0.0 . 88 . . Atlas-SNP ROCK2 9475 hgsc.bcm.edu hg19 2 11348447 11348447 + Missense_Mutation SNP T T A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . ROCK2 NM_004850 exon19 c.A2330T p.E777V AGGAGCTCATTTA . 49.0 18.0 38.0 0.0 . 224 . . Atlas-SNP ADCY3 109 hgsc.bcm.edu hg19 2 25141567 25141567 + Missense_Mutation SNP G G T novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . ADCY3 NM_004036 exon1 c.C290A p.A97D ACCACAGCACACA . 138.0 52.0 147.0 0.0 . 114 . . Atlas-SNP PEX13 5194 hgsc.bcm.edu hg19 2 61258660 61258660 + Missense_Mutation SNP A A G novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . PEX13 NM_002618 exon2 c.A199G p.S67G AGTAGCAGTGTGA . 92.0 31.0 78.0 0.0 . 27 . . Atlas-SNP CNGA3 1261 hgsc.bcm.edu hg19 2 98996755 98996755 + Silent SNP C C A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . CNGA3 NM_001298 exon4 c.C333A p.S111S GGTGTCCAGCCAA . 90.0 38.0 115.0 0.0 . 118 . . Atlas-SNP CCDC74A 90557 hgsc.bcm.edu hg19 2 132290493 132290493 + Missense_Mutation SNP G G A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . CCDC74A NM_001258305 exon5 c.G740A p.R247K CCCGGAGGAAGCT . 218.0 42.0 260.0 0.0 . 44 . . Atlas-SNP PKP4 8502 hgsc.bcm.edu hg19 2 159526271 159526271 + Missense_Mutation SNP G G A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . PKP4 NM_001005476 exon17 c.G2768A p.G923D TCCCCGGCGGCAA . 186.0 83.0 224.0 0.0 . 133 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179484523 179484523 + Missense_Mutation SNP C C A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . TTN NM_001267550 exon250 c.G46521T p.K15507N TTCCACCTTATCT . 77.0 40.0 62.0 0.0 . 18412 . . Atlas-SNP AOX1 316 hgsc.bcm.edu hg19 2 201531449 201531449 + Missense_Mutation SNP A A G novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . AOX1 NM_001159 exon32 c.A3583G p.I1195V TGCAGTATAAATC . 83.0 39.0 73.0 0.0 . 152 . . Atlas-SNP ABCA12 26154 hgsc.bcm.edu hg19 2 215813394 215813394 + Missense_Mutation SNP C C T rs373723120 TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . ABCA12 NM_173076 exon47 c.G7030A p.D2344N CCAGGTCATCTAA . 159.0 59.0 140.0 0.0 . 368 . . Atlas-SNP SP140 11262 hgsc.bcm.edu hg19 2 231090583 231090583 + Silent SNP G G A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 SP140_ENST00000392045,NS,carcinoma,+1,2 SP140 NM_007237 exon1 c.G24A p.G8G GCAGGGGCAGATG . 100.0 38.0 72.0 1.0 . 121 . . Atlas-SNP CNTN6 27255 hgsc.bcm.edu hg19 3 1189706 1189706 + Nonsense_Mutation SNP G G A rs144055237 bycluster;alternate_allele TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . CNTN6 NM_014461 exon2 c.G14A p.W5X TGCTATGGAAACT . 171.0 62.0 122.0 0.0 . 245 . G|1.000;C|0.000 Atlas-SNP FANCD2 2177 hgsc.bcm.edu hg19 3 10136948 10136948 + Missense_Mutation SNP G G A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . FANCD2 NM_001018115 exon41 c.G4028A p.G1343E TGTGTGGGCATTC . 117.0 58.0 110.0 0.0 . 253 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41266100 41266100 + Missense_Mutation SNP T T C novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 CTNNB1,gallbladder,other,-1,1 CTNNB1 NM_001098209 exon3 c.T97C p.S33P CTGGACTCTGGAA . 154.0 70.0 183.0 0.0 . 4904 . . Atlas-SNP DNAH1 25981 hgsc.bcm.edu hg19 3 52434364 52434364 + Missense_Mutation SNP T T A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . DNAH1 NM_015512 exon78 c.T12700A p.S4234T GGACACTCTACCA . 78.0 34.0 87.0 0.0 . 534 . . Atlas-SNP PBRM1 55193 hgsc.bcm.edu hg19 3 52598201 52598201 + Missense_Mutation SNP G G A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . PBRM1 NM_018313 exon24 c.C3665T p.T1222I ATTTCAGTTGGCC . 70.0 31.0 79.0 0.0 . 1252 . . Atlas-SNP NSUN3 63899 hgsc.bcm.edu hg19 3 93802963 93802963 + Silent SNP A A G novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . NSUN3 NM_022072 exon3 c.A135G p.T45T ACTAACATCTCCA . 117.0 48.0 126.0 0.0 . 33 . . Atlas-SNP SENP7 57337 hgsc.bcm.edu hg19 3 101058948 101058948 + Missense_Mutation SNP A A T novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . SENP7 NM_020654 exon16 c.T2348A p.F783Y AGGTAAAAATCAA . 293.0 116.0 258.0 0.0 . 170 . . Atlas-SNP ZDHHC23 254887 hgsc.bcm.edu hg19 3 113667674 113667674 + Missense_Mutation SNP C C T novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . ZDHHC23 NM_173570 exon2 c.C25T p.P9S ATGAAGCCTGTGA . 65.0 29.0 48.0 0.0 . 38 . . Atlas-SNP QTRTD1 79691 hgsc.bcm.edu hg19 3 113785076 113785076 + Missense_Mutation SNP G G A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . QTRTD1 NM_001256835 exon3 c.G238A p.A80T TACAGAGCAGAAC . 59.0 27.0 50.0 0.0 . 29 . . Atlas-SNP COL6A5 256076 hgsc.bcm.edu hg19 3 130129336 130129336 + Missense_Mutation SNP G G T rs371782483 alternate_allele TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . COL6A5 NM_153264 exon20 c.G4630T p.V1544L AAAGGGGTGCAAG . 129.0 57.0 98.0 0.0 . 205 . . Atlas-SNP CLSTN2 64084 hgsc.bcm.edu hg19 3 140281700 140281700 + Missense_Mutation SNP T T G novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . CLSTN2 NM_022131 exon14 c.T2260G p.Y754D ATCCGCTACCGCA . 121.0 47.0 116.0 0.0 . 190 . . Atlas-SNP CCDC39 339829 hgsc.bcm.edu hg19 3 180359906 180359906 + Silent SNP A A T novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . CCDC39 NM_181426 exon13 c.T1749A p.L583L TAGGGAAAGAACT . 102.0 42.0 83.0 0.0 . 242 . . Atlas-SNP MAP6D1 79929 hgsc.bcm.edu hg19 3 183543020 183543020 + Missense_Mutation SNP C C T novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . MAP6D1 NM_024871 exon1 c.G316A p.A106T GTGGCGCGGAGGA . 23.0 10.0 30.0 0.0 . 2 . . Atlas-SNP HTT 3064 hgsc.bcm.edu hg19 4 3241784 3241784 + Missense_Mutation SNP T T A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . HTT NM_002111 exon67 c.T9427A p.X3143R ACCTGCTGAGCGC . 81.0 44.0 88.0 0.0 . 221 . . Atlas-SNP FRAS1 80144 hgsc.bcm.edu hg19 4 79373018 79373018 + Missense_Mutation SNP G G C novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . FRAS1 NM_025074 exon46 c.G6556C p.D2186H TTGATTGACAAGT . 55.0 20.0 56.0 0.0 . 779 . . Atlas-SNP PRDM8 56978 hgsc.bcm.edu hg19 4 81123282 81123282 + Silent SNP C C A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . PRDM8 NM_001099403 exon4 c.C666A p.G222G TTTAGGCCCGGGT . 154.0 67.0 213.0 0.0 . 44 . . Atlas-SNP PPAP2A 8611 hgsc.bcm.edu hg19 5 54763785 54763785 + Missense_Mutation SNP C C T novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . PPAP2A NM_176895 exon3 c.G406A p.D136N CTGGATCACAAAC . 76.0 31.0 83.0 0.0 . 42 . . Atlas-SNP ANKRD55 79722 hgsc.bcm.edu hg19 5 55472050 55472050 + Silent SNP A A G novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . ANKRD55 NM_024669 exon4 c.T241C p.L81L TCTTCAACAGCAG . 100.0 41.0 76.0 0.0 . 70 . . Atlas-SNP ALDH7A1 501 hgsc.bcm.edu hg19 5 125896800 125896800 + Silent SNP T T C novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . ALDH7A1 NM_001202404 exon10 c.A969G p.E323E TCCAAGTTCCAAC . 505.0 172.0 473.0 0.0 . 57 . . Atlas-SNP PRSS16 10279 hgsc.bcm.edu hg19 6 27222637 27222637 + Missense_Mutation SNP T T C novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . PRSS16 NM_005865 exon10 c.T1316C p.V439A ACAAAGTGCTGTT . 181.0 63.0 55.0 0.0 . 66 . . Atlas-SNP ATF6B 1388 hgsc.bcm.edu hg19 6 32084267 32084267 + Missense_Mutation SNP C C T novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 ATF6B,NS,carcinoma,0,1 ATF6B NM_004381 exon17 c.G1872A p.M624I GGGGGCCATGGCA . 175.0 54.0 61.0 0.0 . 40 . . Atlas-SNP NOTCH4 4855 hgsc.bcm.edu hg19 6 32166274 32166274 + Silent SNP C C A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . NOTCH4 NM_004557 exon26 c.G4680T p.A1560A AGGGAGCGCCCCA . 176.0 67.0 99.0 0.0 . 201 . . Atlas-SNP ZNF318 24149 hgsc.bcm.edu hg19 6 43306248 43306248 + Missense_Mutation SNP T T G novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . ZNF318 NM_014345 exon10 c.A5488C p.M1830L CAATCATTAGCAA . 272.0 61.0 136.0 0.0 . 175 . . Atlas-SNP ZUFSP 221302 hgsc.bcm.edu hg19 6 116972883 116972883 + Missense_Mutation SNP T T A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . ZUFSP NM_145062 exon7 c.A1168T p.I390F TTGGAATGCAAGG . 51.0 46.0 29.0 0.0 . 46 . . Atlas-SNP ZBTB2 57621 hgsc.bcm.edu hg19 6 151687721 151687721 + Silent SNP C C T novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . ZBTB2 NM_020861 exon3 c.G480A p.R160R CTGTGGCCGTGGA . 54.0 46.0 95.0 0.0 . 30 . . Atlas-SNP ZBTB2 57621 hgsc.bcm.edu hg19 6 151687722 151687722 + Missense_Mutation SNP C C A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . ZBTB2 NM_020861 exon3 c.G479T p.R160L TGTGGCCGTGGAT . 54.0 46.0 96.0 0.0 . 30 . . Atlas-SNP TNRC18 84629 hgsc.bcm.edu hg19 7 5352548 5352548 + Silent SNP T T G rs112615228 alternate_allele TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . TNRC18 NM_001080495 exon27 c.A7974C p.S2658S GGAGGATGAGGAC . 28.0 14.0 32.0 0.0 . 311 . T|0.500;A|0.500 Atlas-SNP TRA2A 29896 hgsc.bcm.edu hg19 7 23545860 23545860 + Missense_Mutation SNP C C G novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 TRA2A,NS,carcinoma,0,1 TRA2A NM_013293 exon6 c.G667C p.G223R CGCCGCCGCCTCC . 116.0 40.0 76.0 0.0 . 29 . . Atlas-SNP BLVRA 644 hgsc.bcm.edu hg19 7 43846653 43846653 + Missense_Mutation SNP C C G novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . BLVRA NM_001253823 exon9 c.C710G p.S237C CTGGGTCCTTGGA . 72.0 26.0 56.0 0.0 . 26 . . Atlas-SNP ZNF716 441234 hgsc.bcm.edu hg19 7 57529339 57529339 + Nonsense_Mutation SNP T T A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . ZNF716 NM_001159279 exon4 c.T1172A p.L391X TTAGCTTACCCTC . 73.0 33.0 78.0 0.0 . 207 . . Atlas-SNP COL1A2 1278 hgsc.bcm.edu hg19 7 94027070 94027070 + Silent SNP G G A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . COL1A2 NM_000089 exon2 c.G81A p.E27E ACAAGAGGTGAGT . 301.0 83.0 148.0 0.0 . 240 . . Atlas-SNP PPP1R3A 5506 hgsc.bcm.edu hg19 7 113558467 113558467 + Silent SNP A A T novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . PPP1R3A NM_002711 exon1 c.T585A p.V195V AGGAGGAACCAAT . 126.0 39.0 75.0 0.0 . 317 . . Atlas-SNP PLXNA4 91584 hgsc.bcm.edu hg19 7 131829964 131829964 + Silent SNP G G T novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . PLXNA4 NM_020911 exon29 c.C5139A p.I1713I GTACTTGATGGCC . 195.0 44.0 136.0 0.0 . 873 . . Atlas-SNP TTI2 80185 hgsc.bcm.edu hg19 8 33361419 33361419 + Missense_Mutation SNP A A T novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . . NM_001265581 exon5 c.T962A p.I321N TCCAGGATGGGGA . 47.0 39.0 87.0 0.0 . . . . Atlas-SNP C8orf86 389649 hgsc.bcm.edu hg19 8 38386043 38386043 + Missense_Mutation SNP T T C novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . C8orf86 NM_207412 exon1 c.A113G p.E38G CCAAGCTCCTCAG . 47.0 32.0 74.0 0.0 . 17 . . Atlas-SNP ZNF7 7553 hgsc.bcm.edu hg19 8 146067786 146067786 + Nonsense_Mutation SNP C C T rs370205689 alternate_allele TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . ZNF7 NM_003416 exon5 c.C1294T p.Q432X CAGCATCAGCTGA . 59.0 20.0 36.0 0.0 . 62 . . Atlas-SNP SLC1A1 6505 hgsc.bcm.edu hg19 9 4544613 4544613 + Silent SNP T T C novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 SLC1A1,caecum,carcinoma,0,1 SLC1A1 NM_004170 exon2 c.T138C p.T46T CTCAACTCTAGAG . 204.0 51.0 137.0 0.0 . 43 . . Atlas-SNP KDM4C 23081 hgsc.bcm.edu hg19 9 7103697 7103697 + Missense_Mutation SNP T T G novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . KDM4C NM_001146694 exon18 c.T2437G p.C813G ATCTTCTGCAGAC . 106.0 15.0 63.0 0.0 . 186 . . Atlas-SNP KDM4C 23081 hgsc.bcm.edu hg19 9 7103698 7103698 + Missense_Mutation SNP G G A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . KDM4C NM_001146694 exon18 c.G2438A p.C813Y TCTTCTGCAGACA . 105.0 14.0 60.0 0.0 . 186 . . Atlas-SNP KLHL9 55958 hgsc.bcm.edu hg19 9 21334479 21334479 + Missense_Mutation SNP T T C novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . KLHL9 NM_018847 exon1 c.A380G p.E127G GCAGCTTCAAGTG . 116.0 46.0 107.0 0.0 . 61 . . Atlas-SNP ZBTB5 9925 hgsc.bcm.edu hg19 9 37440805 37440805 + Missense_Mutation SNP G G T novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . ZBTB5 NM_014872 exon2 c.C1744A p.P582T ACTGTGGAGGGCC . 71.0 36.0 70.0 0.0 . 43 . . Atlas-SNP PSMB7 5695 hgsc.bcm.edu hg19 9 127174695 127174695 + Missense_Mutation SNP G G C novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . PSMB7 NM_002799 exon4 c.C331G p.L111V TGGAGAGGGAGTG . 109.0 54.0 85.0 0.0 . 11 . . Atlas-SNP ZBTB43 23099 hgsc.bcm.edu hg19 9 129595723 129595723 + Missense_Mutation SNP A A T novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . ZBTB43 NM_001135776 exon2 c.A935T p.D312V ATTATGATGAGCA . 56.0 18.0 51.0 0.0 . 25 . . Atlas-SNP ASS1 445 hgsc.bcm.edu hg19 9 133327679 133327679 + Missense_Mutation SNP G G T novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . ASS1 NM_054012 exon2 c.G64T p.V22L ATCCTCGTGTGGC . 53.0 26.0 68.0 0.0 . 37 . . Atlas-SNP USP54 159195 hgsc.bcm.edu hg19 10 75276369 75276369 + Missense_Mutation SNP G G C novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . USP54 NM_152586 exon18 c.C3815G p.S1272C AGCTGAGAATCAC . 70.0 24.0 57.0 0.0 . 178 . . Atlas-SNP WNT8B 7479 hgsc.bcm.edu hg19 10 102239757 102239757 + Missense_Mutation SNP G G A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . WNT8B NM_003393 exon3 c.G229A p.G77R CATGGTGGGCTTC . 36.0 16.0 41.0 0.0 . 31 . . Atlas-SNP SPI1 6688 hgsc.bcm.edu hg19 11 47381480 47381480 + Missense_Mutation SNP T T C novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . SPI1 NM_001080547 exon3 c.A257G p.Y86C TGGCGGTAGAGCT . 28.0 11.0 25.0 0.0 . 21 . . Atlas-SNP BTBD18 643376 hgsc.bcm.edu hg19 11 57513362 57513362 + Missense_Mutation SNP C C T novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . BTBD18 NM_001145101 exon3 c.G383A p.G128E AACTTTCCACCCT . 108.0 43.0 100.0 0.0 . 26 . . Atlas-SNP OR9Q2 219957 hgsc.bcm.edu hg19 11 57958110 57958110 + Missense_Mutation SNP C C T novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . OR9Q2 NM_001005283 exon1 c.C148T p.R50C CTGATCCGTGGCG . 91.0 44.0 126.0 0.0 . 78 . . Atlas-SNP SUV420H1 51111 hgsc.bcm.edu hg19 11 67953257 67953257 + Missense_Mutation SNP A A C novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . SUV420H1 NM_017635 exon3 c.T299G p.M100R GTATTCATTTTGT . 98.0 38.0 70.0 0.0 . 125 . . Atlas-SNP FAT3 120114 hgsc.bcm.edu hg19 11 92531036 92531036 + Silent SNP C C T novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . FAT3 NM_001008781 exon9 c.C4857T p.V1619V ACCGGTCCTAGGC . 174.0 75.0 182.0 0.0 . 1822 . . Atlas-SNP EXPH5 23086 hgsc.bcm.edu hg19 11 108381599 108381599 + Silent SNP C C T novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . EXPH5 NM_015065 exon6 c.G4635A p.Q1545Q TGCCTCCTGACTT . 89.0 43.0 89.0 0.0 . 193 . . Atlas-SNP UBE4A 9354 hgsc.bcm.edu hg19 11 118245829 118245829 + Silent SNP A A G novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . UBE4A NM_004788 exon9 c.A1356G p.L452L GAAGCTATGCCAG . 111.0 53.0 91.0 0.0 . 97 . . Atlas-SNP PDZRN4 29951 hgsc.bcm.edu hg19 12 41949558 41949558 + Nonsense_Mutation SNP T T A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . PDZRN4 NM_001164595 exon7 c.T1361A p.L454X GGATTTTGCAAGT . 71.0 31.0 72.0 0.0 . 346 . . Atlas-SNP PRICKLE1 144165 hgsc.bcm.edu hg19 12 42858275 42858275 + Missense_Mutation SNP G G C novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . PRICKLE1 NM_001144882 exon7 c.C1561G p.L521V ACTCCAGGGAATC . 108.0 47.0 89.0 0.0 . 105 . . Atlas-SNP C12orf68 387856 hgsc.bcm.edu hg19 12 48578199 48578199 + Silent SNP C C A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . C12orf68 NM_001013635 exon1 c.C294A p.R98R GCCCCGCCAGGGC . 25.0 13.0 19.0 0.0 . 11 . . Atlas-SNP C12orf68 387856 hgsc.bcm.edu hg19 12 48578200 48578200 + Missense_Mutation SNP C C A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 C12orf68,NS,carcinoma,0,1 C12orf68 NM_001013635 exon1 c.C295A p.Q99K CCCCGCCAGGGCG . 25.0 13.0 19.0 0.0 . 11 . . Atlas-SNP CAND1 55832 hgsc.bcm.edu hg19 12 67699851 67699851 + Missense_Mutation SNP A A C novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . CAND1 NM_018448 exon10 c.A2403C p.K801N TGCCAAATGTGTA . 80.0 38.0 63.0 0.0 . 100 . . Atlas-SNP ZFC3H1 196441 hgsc.bcm.edu hg19 12 72017346 72017346 + Missense_Mutation SNP A A C novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . ZFC3H1 NM_144982 exon24 c.T4538G p.V1513G TCAGCTACTATTC . 96.0 48.0 61.0 0.0 . 172 . . Atlas-SNP P2RX2 22953 hgsc.bcm.edu hg19 12 133197658 133197658 + Silent SNP G G A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . P2RX2 NM_170683 exon8 c.G846A p.K282K CCCCAAGTACTCC . 42.0 24.0 50.0 0.0 . 49 . . Atlas-SNP ATP8A2 51761 hgsc.bcm.edu hg19 13 26273415 26273415 + Silent SNP G G T novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . ATP8A2 NM_016529 exon25 c.G2316T p.A772A GTACGCGCTCTCC . 57.0 19.0 68.0 0.0 . 181 . . Atlas-SNP ATP8A2 51761 hgsc.bcm.edu hg19 13 26273416 26273416 + Missense_Mutation SNP C C T novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . ATP8A2 NM_016529 exon25 c.C2317T p.L773F TACGCGCTCTCCT . 57.0 16.0 66.0 0.0 . 181 . . Atlas-SNP FAM124A 220108 hgsc.bcm.edu hg19 13 51854702 51854702 + Missense_Mutation SNP C C A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . FAM124A NM_145019 exon5 c.C1059A p.S353R TGGCAGCAGCCAG . 44.0 13.0 49.0 0.0 . 61 . . Atlas-SNP TEP1 7011 hgsc.bcm.edu hg19 14 20876328 20876328 + Missense_Mutation SNP T T G novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . TEP1 NM_007110 exon2 c.A271C p.M91L TCTCCATGGTCTT . 182.0 75.0 173.0 0.0 . 224 . . Atlas-SNP YLPM1 56252 hgsc.bcm.edu hg19 14 75230510 75230510 + Silent SNP G G T novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . YLPM1 NM_019589 exon1 c.G318T p.P106P GCCACCGATGCCC . 45.0 15.0 38.0 0.0 . 298 . . Atlas-SNP NEK9 91754 hgsc.bcm.edu hg19 14 75590868 75590868 + Missense_Mutation SNP C C T novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . NEK9 NM_033116 exon2 c.G278A p.R93H TCACGACGTTCCT . 134.0 13.0 131.0 0.0 . 64 . . Atlas-SNP FLRT2 23768 hgsc.bcm.edu hg19 14 86089139 86089139 + Silent SNP C C A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . FLRT2 NM_013231 exon2 c.C1281A p.L427L CCAGCTCTCTATC . 137.0 58.0 171.0 0.0 . 168 . . Atlas-SNP FMN1 342184 hgsc.bcm.edu hg19 15 33359765 33359765 + Silent SNP A A G novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . FMN1 NM_001103184 exon1 c.T321C p.S107S TCTCTGACTTCCC . 166.0 44.0 111.0 0.0 . 174 . . Atlas-SNP FMN1 342184 hgsc.bcm.edu hg19 15 33359984 33359984 + Silent SNP A A T rs184741064 bycluster;by1000genomes;alternate_allele TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . FMN1 NM_001103184 exon1 c.T102A p.S34S TTTCATAGAGAAC . 127.0 39.0 79.0 0.0 . 174 . A|1.000;G|0.000 Atlas-SNP CGNL1 84952 hgsc.bcm.edu hg19 15 57731023 57731023 + Missense_Mutation SNP C C T novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . CGNL1 NM_001252335 exon3 c.C826T p.L276F GATGTTCTTCCCT . 237.0 58.0 196.0 0.0 . 125 . . Atlas-SNP SALL1 6299 hgsc.bcm.edu hg19 16 51173435 51173435 + Missense_Mutation SNP T T C novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . SALL1 NM_002968 exon2 c.A2698G p.N900D AATCATTGGTCAG . 65.0 25.0 67.0 0.0 . 301 . . Atlas-SNP USP6 9098 hgsc.bcm.edu hg19 17 5072174 5072174 + Missense_Mutation SNP A A G novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . USP6 NM_004505 exon27 c.A3341G p.D1114G CACGAGACCCGGC . 188.0 88.0 218.0 1.0 . 213 . . Atlas-SNP MYH1 4619 hgsc.bcm.edu hg19 17 10399270 10399270 + Silent SNP G G C novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . MYH1 NM_005963 exon35 c.C5166G p.T1722T CACCTGGGTGTGC . 59.0 28.0 63.0 0.0 . 403 . . Atlas-SNP MYH1 4619 hgsc.bcm.edu hg19 17 10408340 10408340 + Missense_Mutation SNP C C T novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . MYH1 NM_005963 exon22 c.G2478A p.M826I CACATTCATGAAG . 67.0 31.0 85.0 0.0 . 403 . . Atlas-SNP SLFN13 146857 hgsc.bcm.edu hg19 17 33769276 33769276 + Nonsense_Mutation SNP C C A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . SLFN13 NM_144682 exon5 c.G1228T p.E410X GGGACTCTGGAGT . 43.0 19.0 41.0 0.0 . 79 . . Atlas-SNP SOCS7 30837 hgsc.bcm.edu hg19 17 36508355 36508355 + Silent SNP C C T novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . SOCS7 NM_014598 exon1 c.C228T p.V76V GACAGTCGGTGGG . 38.0 12.0 28.0 0.0 . 22 . . Atlas-SNP FHOD3 80206 hgsc.bcm.edu hg19 18 34156492 34156492 + Missense_Mutation SNP C C A rs147225084 alternate_allele TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . FHOD3 NM_025135 exon6 c.C590A p.T197N TGTACACTCTCAT . 86.0 32.0 82.0 0.0 . 210 . C|1.000;T|0.000 Atlas-SNP TXNL1 9352 hgsc.bcm.edu hg19 18 54285333 54285333 + Missense_Mutation SNP T T C novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . TXNL1 NM_004786 exon4 c.A394G p.K132E CAGCTTTGTTAAT . 51.0 23.0 47.0 0.0 . 30 . . Atlas-SNP TSHZ3 57616 hgsc.bcm.edu hg19 19 31768705 31768705 + Missense_Mutation SNP C C T novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . TSHZ3 NM_020856 exon2 c.G1994A p.R665H TGGCTGCGGAAGC . 44.0 18.0 65.0 0.0 . 549 . . Atlas-SNP PRKD2 25865 hgsc.bcm.edu hg19 19 47192900 47192900 + Missense_Mutation SNP T T A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . PRKD2 NM_016457 exon14 c.A1865T p.K622I AACACTTTCTCAG . 103.0 47.0 128.0 0.0 . 94 . . Atlas-SNP ZNF331 55422 hgsc.bcm.edu hg19 19 54080362 54080362 + Missense_Mutation SNP G G T novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . ZNF331 NM_001253801 exon5 c.G548T p.G183V ATACTGGGGAGAA . 100.0 51.0 113.0 0.0 . 66 . . Atlas-SNP ZNF543 125919 hgsc.bcm.edu hg19 19 57839129 57839129 + Missense_Mutation SNP A A G novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . ZNF543 NM_213598 exon4 c.A299G p.E100G TGCCTGAGGAAGT . 220.0 46.0 239.0 0.0 . 61 . . Atlas-SNP ZSCAN1 284312 hgsc.bcm.edu hg19 19 58549467 58549467 + Missense_Mutation SNP G G A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . ZSCAN1 NM_182572 exon3 c.G263A p.G88D TCCTGGGCGCGCT . 37.0 21.0 19.0 0.0 . 102 . . Atlas-SNP PANK2 80025 hgsc.bcm.edu hg19 20 3893207 3893207 + Silent SNP G G A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . PANK2 NM_153638 exon4 c.G1338A p.V446V CAAAGTGGATAAA . 121.0 36.0 77.0 0.0 . 37 . . Atlas-SNP CEP250 11190 hgsc.bcm.edu hg19 20 34057783 34057783 + Missense_Mutation SNP A A G novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . CEP250 NM_007186 exon10 c.A920G p.K307R TGATAAAGGCTCT . 85.0 38.0 66.0 0.0 . 141 . . Atlas-SNP PLCG1 5335 hgsc.bcm.edu hg19 20 39792440 39792440 + Missense_Mutation SNP T T C novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . PLCG1 NM_182811 exon10 c.T977C p.L326P ACCCTCTTTCCCA . 82.0 39.0 73.0 0.0 . 111 . . Atlas-SNP MYBL2 4605 hgsc.bcm.edu hg19 20 42338684 42338684 + Silent SNP C C T novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . MYBL2 NM_002466 exon10 c.C1587T p.Y529Y GAAGTACGGACCC . 71.0 16.0 103.0 0.0 . 82 . . Atlas-SNP LAMA5 3911 hgsc.bcm.edu hg19 20 60892042 60892042 + Missense_Mutation SNP T T C novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . LAMA5 NM_005560 exon56 c.A7549G p.R2517G TGGCCCTCTGGGT . 32.0 17.0 23.0 0.0 . 268 . . Atlas-SNP DIDO1 11083 hgsc.bcm.edu hg19 20 61525548 61525548 + Splice_Site SNP T T A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . DIDO1 NM_001193369 exon13 c.2573-2A>T . CTGGCCTGAAGAA . 38.0 17.0 41.0 0.0 . 321 . . Atlas-SNP ZGPAT 84619 hgsc.bcm.edu hg19 20 62340049 62340049 + Silent SNP G G A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . ZGPAT NM_032527 exon2 c.G117A p.L39L CCAGCTGCAGGGG . 41.0 15.0 43.0 0.0 . 57 . . Atlas-SNP DGCR14 8220 hgsc.bcm.edu hg19 22 19124884 19124884 + Silent SNP T T C novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . DGCR14 NM_022719 exon8 c.A987G p.E329E CGACCCTTCAACT . 126.0 52.0 148.0 0.0 . 43 . . Atlas-SNP MORC2 22880 hgsc.bcm.edu hg19 22 31328358 31328358 + Missense_Mutation SNP T T C novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . MORC2 NM_014941 exon25 c.A2643G p.I881M AAAAGATATTAGC . 54.0 30.0 69.0 0.0 . 78 . . Atlas-SNP HDAC10 83933 hgsc.bcm.edu hg19 22 50688856 50688856 + Silent SNP C C A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . HDAC10 NM_032019 exon3 c.G291T p.P97P ACGCACCGGGTGG . 57.0 36.0 68.0 0.0 . 29 . . Atlas-SNP ITM2A 9452 hgsc.bcm.edu hg19 X 78618461 78618461 + Missense_Mutation SNP G G C novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . ITM2A NM_004867 exon3 c.C419G p.A140G ATAATTGCTGCAG . 157.0 140.0 140.0 1.0 . 51 . . Atlas-SNP PABPC5 140886 hgsc.bcm.edu hg19 X 90690655 90690655 + Missense_Mutation SNP C C T novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . PABPC5 NM_080832 exon2 c.C79T p.P27S TTGGACCCAGATG . 62.0 15.0 61.0 0.0 . 92 . . Atlas-SNP IRS4 8471 hgsc.bcm.edu hg19 X 107977380 107977380 + Missense_Mutation SNP T T C novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . IRS4 NM_003604 exon1 c.A2195G p.H732R CGAGAGTGGCGCT . 85.0 78.0 115.0 0.0 . 253 . . Atlas-SNP MAGEA6 4105 hgsc.bcm.edu hg19 X 151870008 151870008 + Missense_Mutation SNP G G T novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . MAGEA6 NM_005363 exon3 c.G698T p.G233V TTGAGGGGAGGGA . 222.0 10.0 134.0 0.0 . 53 . . Atlas-SNP DSPP 1834 hgsc.bcm.edu hg19 4 88537080 88537088 + In_Frame_Del DEL ACAGCAGCA ACAGCAGCA - novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 ACAGCAGCA ACAGCAGCA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . DSPP NM_014208 exon5 c.3265_3273del p.1089_1091del . . 84.0 20.0 75.0 0.0 . 174 . . Atlas-INDEL OR2W5 441932 hgsc.bcm.edu hg19 1 247655247 247655247 + Frame_Shift_Del DEL T T - novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . OR2W5 NM_001004698 exon1 c.817delG p.V273fs . . 301.0 101.0 180.0 0.0 . 97 . . Atlas-Indel,Pindel KIAA1239 57495 hgsc.bcm.edu hg19 4 37432206 37432207 + Frame_Shift_Ins INS - - A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . KIAA1239 NM_001144990 exon4 c.370_371insA p.E124fs . . 64.0 29.0 60.0 0.0 . 79 . . Atlas-Indel,Pindel PIGW 284098 hgsc.bcm.edu hg19 17 34894023 34894034 + In_Frame_Del DEL AAGTAAATGTAG AAGTAAATGTAG - novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 AAGTAAATGTAG AAGTAAATGTAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . PIGW NM_178517 exon2 c.1072_1083del p.358_361del . . 53.0 12.0 53.0 0.0 . 50 . . Atlas-Indel,Pindel SP3 6670 hgsc.bcm.edu hg19 2 174820558 174820558 + Frame_Shift_Del DEL T T - novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . SP3 NM_003111 exon4 c.683delT p.I228fs . . 63.0 32.0 71.0 0.0 . 82 . . Atlas-Indel,Pindel UBXN7 26043 hgsc.bcm.edu hg19 3 196159225 196159226 + In_Frame_Ins INS - - CCC novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . UBXN7 NM_015562 exon1 c.46_47insGGG p.L16delinsGL . . 152.0 58.0 154.0 0.0 . 43 . . Atlas-Indel,Pindel FAM83D 81610 hgsc.bcm.edu hg19 20 37580989 37580998 + Frame_Shift_Del DEL CAAAGAGCGG CAAAGAGCGG - novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 CAAAGAGCGG CAAAGAGCGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 FAM83D,NS,carcinoma,0,1 FAM83D NM_030919 exon4 c.1673_1682del p.558_561del . . 89.0 16.0 125.0 0.0 . 60 . . Atlas-Indel,Pindel ZDHHC20 253832 hgsc.bcm.edu hg19 13 21974596 21974597 + Frame_Shift_Ins INS - - A novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 . ZDHHC20 NM_153251 exon7 c.510_511insT p.F170fs . . 405.0 177.0 332.0 0.0 . 36 . . Atlas-Indel,Pindel PTEN 5728 hgsc.bcm.edu hg19 10 89653856 89653857 + Frame_Shift_Ins INS - - ATGTAGTAAGGTAAGAATGCTTTGATTTTCTATTTCAA novel TCGA-G3-A6UC-01A-21D-A33K-10 TCGA-G3-A6UC-10A-01D-A33K-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ec3c8a89-d074-4f74-afca-6f67a8fb7ce4 fe550293-61ff-43cb-aace-8ff6e6889a33 PTEN,caecum,carcinoma,-2,2 PTEN NM_000314 exon2 c.154_155insATGTAGTAAGGTAAGAATGCTTTGATTTTCTATTTCAA p.D52_V53delinsDVVRX . . 63.0 10.0 51.0 0.0 . 3652 . . Pindel