Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm PRKCZ 5590 hgsc.bcm.edu hg19 1 2103755 2103755 + Missense_Mutation SNP G G T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PRKCZ NM_002744 exon13 c.G1213T p.G405C GGCCCTGGTGACA . 104.0 25.0 124.0 0.0 . 84 . . Atlas-SNP CLCN6 1185 hgsc.bcm.edu hg19 1 11896203 11896203 + Missense_Mutation SNP A A T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . CLCN6 NM_001286 exon18 c.A1973T p.K658M ACATCAAGTTCAA . 138.0 50.0 149.0 0.0 . 77 . . Atlas-SNP UBR4 23352 hgsc.bcm.edu hg19 1 19482082 19482082 + Missense_Mutation SNP G G T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . UBR4 NM_020765 exon43 c.C6153A p.F2051L GAAAAGGAAGGTA . 244.0 71.0 223.0 0.0 . 415 . . Atlas-SNP RCC1 1104 hgsc.bcm.edu hg19 1 28861881 28861881 + Missense_Mutation SNP G G C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 RCC1,caecum,carcinoma,0,1 RCC1 NM_001048194 exon7 c.G743C p.R248P GTGGCCGGCAAGG . 123.0 43.0 105.0 1.0 . 61 . . Atlas-SNP GJB5 2709 hgsc.bcm.edu hg19 1 35223387 35223387 + Missense_Mutation SNP C C A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . GJB5 NM_005268 exon2 c.C456A p.F152L CTCATTCTACCCC . 95.0 29.0 103.0 0.0 . 35 . . Atlas-SNP WDR65 149465 hgsc.bcm.edu hg19 1 43638463 43638463 + Silent SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . WDR65 NM_152498 exon2 c.T39C p.G13G TTTTGGTCTTCGA . 170.0 27.0 158.0 0.0 . 76 . . Atlas-SNP DMBX1 127343 hgsc.bcm.edu hg19 1 46972704 46972704 + Missense_Mutation SNP G G A rs150745846 TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . DMBX1 NM_147192 exon1 c.G22A p.G8S GTGAACGGCTACT . 408.0 142.0 391.0 0.0 . 50 . G|1.000;A|0.000 Atlas-SNP NRD1 4898 hgsc.bcm.edu hg19 1 52289359 52289359 + Missense_Mutation SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . NRD1 NM_002525 exon9 c.T1340C p.M447T AAAGTCATGTAAT . 185.0 72.0 202.0 0.0 . 89 . . Atlas-SNP L1TD1 54596 hgsc.bcm.edu hg19 1 62676374 62676374 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . L1TD1 NM_001164835 exon5 c.T1928C p.L643S GTGTCTTGGAAAT . 155.0 48.0 161.0 0.0 . 114 . . Atlas-SNP ANGPTL3 27329 hgsc.bcm.edu hg19 1 63070352 63070352 + Silent SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ANGPTL3 NM_014495 exon7 c.C1247C p.A416A ATGGTAAATATAA . 269.0 81.0 259.0 0.0 . 42 . . Atlas-SNP GBP3 2635 hgsc.bcm.edu hg19 1 89480301 89480301 + Silent SNP G G T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . GBP3 NM_018284 exon4 c.C357A p.A119A GAGGACGGCCAGG . 297.0 138.0 229.0 0.0 . 53 . . Atlas-SNP VAV3 10451 hgsc.bcm.edu hg19 1 108322079 108322079 + Silent SNP A A T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . VAV3 NM_006113 exon3 c.T357A p.P119P TGCTATAGGTGTT . 112.0 39.0 83.0 0.0 . 176 . . Atlas-SNP CELSR2 1952 hgsc.bcm.edu hg19 1 109795272 109795272 + Silent SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . CELSR2 NM_001408 exon1 c.C2571T p.G857G AGGAGGCGACGAT . 226.0 100.0 158.0 0.0 . 228 . . Atlas-SNP PDE4DIP 9659 hgsc.bcm.edu hg19 1 144921895 144921895 + Silent SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PDE4DIP NM_001002811 exon5 c.T1623C p.F541F CTCTACAAATTGC . 418.0 55.0 358.0 0.0 . 817 . . Atlas-SNP RPRD2 23248 hgsc.bcm.edu hg19 1 150437008 150437008 + Missense_Mutation SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . RPRD2 NM_015203 exon10 c.A1417G p.S473G GGGGTCAGTCCTG . 57.0 21.0 34.0 0.0 . 189 . . Atlas-SNP PI4KB 5298 hgsc.bcm.edu hg19 1 151280253 151280253 + Nonsense_Mutation SNP C C A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PI4KB NM_002651 exon5 c.G1015T p.E339X TGAATTCTCTCTC . 226.0 105.0 219.0 0.0 . 76 . . Atlas-SNP B4GALT3 8703 hgsc.bcm.edu hg19 1 161141842 161141842 + Missense_Mutation SNP G G T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . B4GALT3 NM_003779 exon8 c.C946A p.Q316K CATCTTGCGTCCA . 143.0 40.0 114.0 0.0 . 39 . . Atlas-SNP SCYL3 57147 hgsc.bcm.edu hg19 1 169847817 169847817 + Silent SNP C C A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . SCYL3 NM_020423 exon3 c.G309T p.G103G ATAGATCCCAGCA . 391.0 208.0 260.0 0.0 . 116 . . Atlas-SNP RASAL2 9462 hgsc.bcm.edu hg19 1 178269226 178269226 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . RASAL2 NM_170692 exon3 c.T430C p.Y144H CCCGAGTACCCAC . 86.0 44.0 74.0 0.0 . 334 . . Atlas-SNP TPR 7175 hgsc.bcm.edu hg19 1 186295352 186295352 + Missense_Mutation SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . TPR NM_003292 exon41 c.G5905A p.E1969K CTTCCTCATCCTC . 140.0 73.0 135.0 0.0 . 441 . . Atlas-SNP GPR25 2848 hgsc.bcm.edu hg19 1 200843249 200843249 + Missense_Mutation SNP T T G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . GPR25 NM_005298 exon1 c.T1084G p.X362E TCCTGGTAGCTGC . 42.0 19.0 37.0 0.0 . 23 . . Atlas-SNP CNTN2 6900 hgsc.bcm.edu hg19 1 205038645 205038645 + Missense_Mutation SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . CNTN2 NM_005076 exon17 c.A2152G p.S718G GGACTCAGCGGAG . 156.0 36.0 124.0 0.0 . 116 . . Atlas-SNP EPRS 2058 hgsc.bcm.edu hg19 1 220146578 220146578 + Splice_Site SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . EPRS NM_004446 exon30 c.4244+2T>C . GAAACTACCTTGT . 135.0 21.0 150.0 0.0 . 140 . . Atlas-SNP LBR 3930 hgsc.bcm.edu hg19 1 225611703 225611703 + Silent SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . LBR NM_194442 exon2 c.A75G p.V25V AATTTCTACTTCA . 192.0 46.0 165.0 0.0 . 54 . . Atlas-SNP OBSCN 84033 hgsc.bcm.edu hg19 1 228469861 228469861 + Missense_Mutation SNP T T C rs189169421 bycluster;by1000genomes;alternate_allele TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 OBSCN_ENST00000359599,NS,carcinoma,0,2 OBSCN NM_001271223 exon36 c.T9712C p.F3238L GTGGTCTTCTCTG . 303.0 172.0 254.0 0.0 . 2142 . T|0.999;G|0.001 Atlas-SNP RAB4A 5867 hgsc.bcm.edu hg19 1 229431599 229431599 + Missense_Mutation SNP G G T rs141754859 alternate_allele TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . RAB4A NM_004578 exon4 c.G232T p.V78L AGGTCCGTGACGA . 125.0 32.0 110.0 0.0 . 29 . G|1.000;A|0.000 Atlas-SNP URB2 9816 hgsc.bcm.edu hg19 1 229779359 229779359 + Silent SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . URB2 NM_014777 exon5 c.G3714A p.G1238G GGTTGGGACGACA . 253.0 127.0 208.0 0.0 . 152 . . Atlas-SNP MAP10 54627 hgsc.bcm.edu hg19 1 232941381 232941381 + Silent SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . . NM_019090 exon1 c.G612A p.L204L CCTGCTGGACTTC . 50.0 4.0 31.0 0.0 . . . . Atlas-SNP BIRC6 57448 hgsc.bcm.edu hg19 2 32654298 32654298 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . BIRC6 NM_016252 exon11 c.A2957C p.K986T TTTCTAAAGGAAT . 37.0 17.0 37.0 0.0 . 838 . . Atlas-SNP SRBD1 55133 hgsc.bcm.edu hg19 2 45812829 45812829 + Missense_Mutation SNP T T G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . SRBD1 NM_018079 exon5 c.A733C p.I245L GTATAATGAAGGG . 104.0 25.0 134.0 0.0 . 107 . . Atlas-SNP STON1 11037 hgsc.bcm.edu hg19 2 48818838 48818838 + Silent SNP A A T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . STON1 NM_001198595 exon4 c.A1977T p.S659S TGGATCAGACCAA . 216.0 36.0 258.0 0.0 . 100 . . Atlas-SNP ZNF638 27332 hgsc.bcm.edu hg19 2 71577282 71577282 + Missense_Mutation SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ZNF638 NM_014497 exon2 c.G1198A p.D400N CATGCTGATGCCC . 82.0 6.0 58.0 0.0 . 179 . . Atlas-SNP AFF3 3899 hgsc.bcm.edu hg19 2 100210640 100210640 + Missense_Mutation SNP G G T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . AFF3 NM_001025108 exon14 c.C1558A p.Q520K AGTACTGATTGCT . 244.0 72.0 279.0 0.0 . 164 . . Atlas-SNP ZC3H8 84524 hgsc.bcm.edu hg19 2 112989510 112989510 + Missense_Mutation SNP T T G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ZC3H8 NM_032494 exon7 c.A748C p.K250Q AAAACTTACAAGG . 74.0 24.0 63.0 0.0 . 17 . . Atlas-SNP PTPN18 26469 hgsc.bcm.edu hg19 2 131117002 131117002 + Silent SNP G G T rs138461234 bycluster;byfrequency;alternate_allele TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PTPN18 NM_014369 exon4 c.G312T p.T104T TGCCACGCAAGGA . 98.0 30.0 119.0 0.0 . 42 . G|0.996;C|0.004 Atlas-SNP COBLL1 22837 hgsc.bcm.edu hg19 2 165542496 165542496 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . COBLL1 NM_014900 exon14 c.T3461G p.L1154R TGGCTGAGTCTTG . 93.0 34.0 96.0 0.0 . 122 . . Atlas-SNP GAD1 2571 hgsc.bcm.edu hg19 2 171713607 171713607 + Missense_Mutation SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . GAD1 NM_000817 exon15 c.A1493G p.E498G ACAGAGAAGAATT . 87.0 25.0 67.0 0.0 . 79 . . Atlas-SNP SP3 6670 hgsc.bcm.edu hg19 2 174820648 174820648 + Missense_Mutation SNP T T G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . SP3 NM_003111 exon4 c.A592C p.N198H CTTGATTTATACC . 193.0 63.0 208.0 0.0 . 82 . . Atlas-SNP GTF3C3 9330 hgsc.bcm.edu hg19 2 197643775 197643775 + Missense_Mutation SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . GTF3C3 NM_012086 exon10 c.T1235C p.L412P TCTACTAGTGTTG . 149.0 47.0 175.0 0.0 . 96 . . Atlas-SNP MPP4 58538 hgsc.bcm.edu hg19 2 202549803 202549803 + Silent SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . MPP4 NM_033066 exon7 c.G558A p.G186G CGCCAGCCCACCG . 121.0 35.0 95.0 0.0 . 93 . . Atlas-SNP PECR 55825 hgsc.bcm.edu hg19 2 216923626 216923626 + Silent SNP T T A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PECR NM_018441 exon4 c.A498T p.P166P AGCTAATGGAAAT . 192.0 66.0 202.0 0.0 . 22 . . Atlas-SNP CHPF 79586 hgsc.bcm.edu hg19 2 220406586 220406586 + Missense_Mutation SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . CHPF NM_024536 exon2 c.G640A p.G214S GGTGGCCAGTTAG . 125.0 39.0 68.0 0.0 . 56 . . Atlas-SNP UGT1A9 54600 hgsc.bcm.edu hg19 2 234581246 234581246 + Silent SNP T T A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . UGT1A9 NM_021027 exon1 c.T666A p.R222R CCACCGTTTTTTC . 341.0 117.0 414.0 0.0 . 79 . . Atlas-SNP UGT1A9 54600 hgsc.bcm.edu hg19 2 234581248 234581248 + Missense_Mutation SNP T T A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . UGT1A9 NM_021027 exon1 c.T668A p.F223Y ACCGTTTTTTCAA . 336.0 113.0 411.0 0.0 . 79 . . Atlas-SNP ITPR1 3708 hgsc.bcm.edu hg19 3 4776907 4776907 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ITPR1 NM_001168272 exon43 c.T5368C p.C1790R GTTCAGTGTCACC . 101.0 39.0 135.0 0.0 . 659 . . Atlas-SNP ARPP21 10777 hgsc.bcm.edu hg19 3 35763321 35763321 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ARPP21 NM_016300 exon14 c.A1220C p.K407T TGTCCAAAGCAGG . 206.0 47.0 255.0 0.0 . 153 . . Atlas-SNP PLCD1 5333 hgsc.bcm.edu hg19 3 38061825 38061825 + Missense_Mutation SNP T T A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PLCD1 NM_001130964 exon2 c.A116T p.D39V TGTAGATCCTCAT . 100.0 32.0 124.0 0.0 . 87 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41266100 41266100 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 CTNNB1,gallbladder,other,-1,1 CTNNB1 NM_001098209 exon3 c.T97C p.S33P CTGGACTCTGGAA . 329.0 98.0 398.0 0.0 . 4904 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41266110 41266110 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 CTNNB1,NS,carcinoma,0,1 CTNNB1 NM_001098209 exon3 c.A107C p.H36P GAATCCATTCTGG . 330.0 96.0 382.0 0.0 . 4904 . . Atlas-SNP MANF 7873 hgsc.bcm.edu hg19 3 51426503 51426503 + Missense_Mutation SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . MANF NM_006010 exon4 c.G532A p.A178T GCCAGTGCACGGA . 100.0 41.0 94.0 0.0 . 8 . . Atlas-SNP ITIH1 3697 hgsc.bcm.edu hg19 3 52823733 52823733 + Silent SNP G G C rs145442481 alternate_allele TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ITIH1 NM_002215 exon19 c.G2184C p.T728T CGGCACGTACTTC . 110.0 40.0 112.0 0.0 . 108 . G|1.000;A|0.000 Atlas-SNP FLNB 2317 hgsc.bcm.edu hg19 3 58141694 58141694 + Nonsense_Mutation SNP C C G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . FLNB NM_001164317 exon42 c.C6873G p.Y2291X TAACTACGAGGTG . 69.0 20.0 75.0 0.0 . 430 . . Atlas-SNP KPNA1 3836 hgsc.bcm.edu hg19 3 122146558 122146558 + Missense_Mutation SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . KPNA1 NM_002264 exon13 c.T1256C p.L419P TCTACTAGGTACC . 55.0 24.0 54.0 0.0 . 42 . . Atlas-SNP C3orf79 152118 hgsc.bcm.edu hg19 3 153202472 153202472 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . C3orf79 NM_001101337 exon1 c.T127C p.Y43H TTGCTTTACAAGG . 138.0 45.0 152.0 0.0 . 13 . . Atlas-SNP SLC2A2 6514 hgsc.bcm.edu hg19 3 170723139 170723139 + Missense_Mutation SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . SLC2A2 NM_000340 exon7 c.T898C p.Y300H GTCGGTAGCTGGA . 198.0 65.0 215.0 0.0 . 71 . . Atlas-SNP EIF4G1 1981 hgsc.bcm.edu hg19 3 184040633 184040633 + Missense_Mutation SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . EIF4G1 NM_001194946 exon14 c.A1841G p.E614G ACCTAGAGGAGAA . 119.0 33.0 95.0 0.0 . 151 . . Atlas-SNP BCL6 604 hgsc.bcm.edu hg19 3 187449531 187449531 + Missense_Mutation SNP C C A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . BCL6 NM_001134738 exon3 c.G349T p.V117F CCACAACATGCTC . 180.0 65.0 155.0 0.0 . 107 . . Atlas-SNP DHX15 1665 hgsc.bcm.edu hg19 4 24529578 24529578 + Missense_Mutation SNP T T G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 DHX15,colon,carcinoma,0,1 DHX15 NM_001358 exon14 c.A2357C p.K786T TGAAGTTTGGCAA . 173.0 65.0 141.0 0.0 . 69 . . Atlas-SNP LIAS 11019 hgsc.bcm.edu hg19 4 39460742 39460742 + Missense_Mutation SNP C C A rs372288500 alternate_allele TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . LIAS NM_194451 exon1 c.C5A p.S2Y AAATGTCTCTACG . 59.0 11.0 52.0 0.0 . 26 . . Atlas-SNP LEF1 51176 hgsc.bcm.edu hg19 4 109000723 109000723 + Missense_Mutation SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . LEF1 NM_016269 exon7 c.G770A p.G257D GGGATGCCAGTTG . 141.0 58.0 174.0 0.0 . 93 . . Atlas-SNP VEGFC 7424 hgsc.bcm.edu hg19 4 177608449 177608449 + Missense_Mutation SNP G G C rs373146571 alternate_allele TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . VEGFC NM_005429 exon6 c.C1037G p.T346S GGGCAGGTTCTTT . 230.0 89.0 257.0 0.0 . 94 . . Atlas-SNP KIAA0947 23379 hgsc.bcm.edu hg19 5 5454677 5454677 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . KIAA0947 NM_015325 exon11 c.T617C p.L206P TGAAACTGCTTCT . 110.0 39.0 87.0 0.0 . 301 . . Atlas-SNP ADCY2 108 hgsc.bcm.edu hg19 5 7773106 7773106 + Missense_Mutation SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ADCY2 NM_020546 exon18 c.A2276G p.Y759C TAAACTATGAGCT . 358.0 128.0 344.0 0.0 . 337 . . Atlas-SNP CDH9 1007 hgsc.bcm.edu hg19 5 26881298 26881298 + Missense_Mutation SNP G G T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . CDH9 NM_016279 exon12 c.C2317A p.R773S TGAAACGAGGCCC . 139.0 44.0 128.0 0.0 . 305 . . Atlas-SNP ITGA2 3673 hgsc.bcm.edu hg19 5 52347345 52347345 + Silent SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ITGA2 NM_002203 exon7 c.T735C p.Y245Y CCAATATGGTGGG . 165.0 50.0 158.0 0.0 . 211 . . Atlas-SNP CDC20B 166979 hgsc.bcm.edu hg19 5 54442574 54442574 + Missense_Mutation SNP T T G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . CDC20B NM_001170402 exon3 c.A237C p.Q79H TTGACTTTGCTGC . 114.0 42.0 125.0 0.0 . 61 . . Atlas-SNP SKIV2L2 23517 hgsc.bcm.edu hg19 5 54619962 54619962 + Nonsense_Mutation SNP T T A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . SKIV2L2 NM_015360 exon3 c.T275A p.L92X TAAGTTTGGCAGA . 115.0 51.0 85.0 0.0 . 104 . . Atlas-SNP IL6ST 3572 hgsc.bcm.edu hg19 5 55259985 55259985 + Missense_Mutation SNP G G T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 IL6ST,NS,carcinoma,0,1 IL6ST NM_175767 exon6 c.C647A p.P216H TATACAGGATCAA . 225.0 78.0 198.0 0.0 . 75 . . Atlas-SNP PLK2 10769 hgsc.bcm.edu hg19 5 57752800 57752800 + Silent SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PLK2 NM_006622 exon8 c.A1128G p.K376K TTTGTCTTTTTTG . 145.0 53.0 96.0 0.0 . 71 . . Atlas-SNP FCHO2 115548 hgsc.bcm.edu hg19 5 72377662 72377662 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . FCHO2 NM_138782 exon23 c.A2033C p.K678T ACTGGAAATGTAG . 151.0 51.0 153.0 0.0 . 96 . . Atlas-SNP GPR98 84059 hgsc.bcm.edu hg19 5 90079723 90079723 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . GPR98 NM_032119 exon67 c.T13502C p.L4501P GCCACCTAGTGAG . 116.0 52.0 95.0 0.0 . 605 . . Atlas-SNP GPR98 84059 hgsc.bcm.edu hg19 5 90079728 90079728 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 GPR98,NS,carcinoma,0,2 GPR98 NM_032119 exon67 c.A13507C p.S4503R CTAGTGAGCAGAA . 119.0 21.0 103.0 0.0 . 605 . . Atlas-SNP ELL2 22936 hgsc.bcm.edu hg19 5 95236720 95236720 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ELL2 NM_012081 exon6 c.A806G p.Q269R TCTCTTTGAAGCT . 158.0 47.0 190.0 0.0 . 63 . . Atlas-SNP ELL2 22936 hgsc.bcm.edu hg19 5 95236730 95236730 + Nonsense_Mutation SNP T T A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ELL2 NM_012081 exon6 c.A796T p.K266X GCTCTTTAAAAAC . 149.0 45.0 192.0 0.0 . 63 . . Atlas-SNP GRIA1 2890 hgsc.bcm.edu hg19 5 153065884 153065884 + Nonsense_Mutation SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 GRIA1_ENST00000544403,NS,carcinoma,-1,1 GRIA1 NM_001258021 exon8 c.C1159T p.R387X GGCATCCGAAAGG . 101.0 14.0 102.0 0.0 . 321 . . Atlas-SNP CCNG1 900 hgsc.bcm.edu hg19 5 162866370 162866370 + Silent SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . CCNG1 NM_199246 exon3 c.A108C p.L36L GAGACTAATTGAG . 133.0 47.0 171.0 0.0 . 28 . . Atlas-SNP RANBP17 64901 hgsc.bcm.edu hg19 5 170346578 170346578 + Missense_Mutation SNP T T G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . RANBP17 NM_022897 exon11 c.T1235G p.F412C AGGCCTTTATCAC . 193.0 73.0 190.0 0.0 . 108 . . Atlas-SNP JARID2 3720 hgsc.bcm.edu hg19 6 15468853 15468853 + Missense_Mutation SNP A A T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . JARID2 NM_004973 exon5 c.A574T p.T192S GATGAGACAGAAG . 209.0 90.0 175.0 0.0 . 135 . . Atlas-SNP SLC44A4 80736 hgsc.bcm.edu hg19 6 31833747 31833747 + Missense_Mutation SNP C C T rs149591801 TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 SLC44A4,NS,carcinoma,0,2 SLC44A4 NM_025257 exon14 c.G1390A p.V464I CGAGGACGCATTG . 122.0 48.0 113.0 0.0 . 67 . C|1.000;T|0.000 Atlas-SNP TAP1 6890 hgsc.bcm.edu hg19 6 32821435 32821435 + Silent SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . TAP1 NM_000593 exon1 c.C159T p.D53D GTCCCGGTCCCGG . 41.0 16.0 32.0 0.0 . 39 . . Atlas-SNP RPS10 6204 hgsc.bcm.edu hg19 6 34389539 34389539 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . RPS10 NM_001203245 exon4 c.A368G p.D123G TCTCTGTCAGCTT . 113.0 34.0 104.0 0.0 . 15 . . Atlas-SNP PGM3 5238 hgsc.bcm.edu hg19 6 83896734 83896734 + Silent SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PGM3 NM_001199917 exon5 c.A534G p.Q178Q ATGGAATTGACCT . 246.0 74.0 216.0 0.0 . 39 . . Atlas-SNP RNF146 81847 hgsc.bcm.edu hg19 6 127608258 127608258 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . RNF146 NM_001242850 exon3 c.A500C p.K167T AGATTAAGCGAGA . 90.0 23.0 77.0 0.0 . 31 . . Atlas-SNP SAMD3 154075 hgsc.bcm.edu hg19 6 130536349 130536349 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . SAMD3 NM_001017373 exon3 c.A70G p.R24G GAAATCTATGAAC . 127.0 40.0 100.0 0.0 . 98 . . Atlas-SNP MEOX2 4223 hgsc.bcm.edu hg19 7 15725601 15725601 + Missense_Mutation SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . MEOX2 NM_005924 exon1 c.G427A p.A143T CGCACGCGGCCCC . 82.0 35.0 48.0 0.0 . 68 . . Atlas-SNP PDE1C 5137 hgsc.bcm.edu hg19 7 31793110 31793110 + Missense_Mutation SNP G G T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PDE1C NM_001191058 exon19 c.C2198A p.A733E GAAGGTGCATAGG . 179.0 70.0 149.0 0.0 . 465 . . Atlas-SNP EEPD1 80820 hgsc.bcm.edu hg19 7 36336620 36336620 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . EEPD1 NM_030636 exon7 c.T1334C p.I445T TCATTATCTTAGG . 110.0 42.0 91.0 0.0 . 47 . . Atlas-SNP NPC1L1 29881 hgsc.bcm.edu hg19 7 44579886 44579886 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . NPC1L1 NM_001101648 exon2 c.A110G p.D37G CATTCGTCATAGA . 77.0 27.0 79.0 0.0 . 141 . . Atlas-SNP IGFBP3 3486 hgsc.bcm.edu hg19 7 45956856 45956856 + Missense_Mutation SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . IGFBP3 NM_001013398 exon2 c.G604A p.D202N GGGTATCTGTGCT . 169.0 60.0 191.0 0.0 . 40 . . Atlas-SNP GUSB 2990 hgsc.bcm.edu hg19 7 65425954 65425954 + Missense_Mutation SNP A A T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . GUSB NM_000181 exon12 c.T1886A p.I629N TTGGCAATCTTCC . 276.0 85.0 308.0 0.0 . 52 . . Atlas-SNP WBSCR22 114049 hgsc.bcm.edu hg19 7 73105342 73105342 + Silent SNP C C A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . WBSCR22 NM_001202560 exon6 c.C459A p.L153L TGTTCTCGTGAGT . 329.0 117.0 361.0 0.0 . 27 . . Atlas-SNP UPK3B 80761 hgsc.bcm.edu hg19 7 76141019 76141019 + Missense_Mutation SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . UPK3B NM_030570 exon2 c.C446T p.A149V TTCCGGCCTCCCC . 416.0 109.0 415.0 0.0 . 15 . . Atlas-SNP MAGI2 9863 hgsc.bcm.edu hg19 7 78130909 78130909 + Missense_Mutation SNP T T G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . MAGI2 NM_012301 exon5 c.A950C p.E317A TAGACTTCGCCCT . 171.0 61.0 190.0 0.0 . 246 . . Atlas-SNP ABCB1 5243 hgsc.bcm.edu hg19 7 87148681 87148681 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ABCB1 NM_000927 exon24 c.T2888G p.L963W GCCACCAAGTAGG . 122.0 13.0 95.0 0.0 . 263 . . Atlas-SNP DLX5 1749 hgsc.bcm.edu hg19 7 96651649 96651649 + Missense_Mutation SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 .,1 DLX5 NM_005221 exon2 c.G388A p.V130M CATTCACCATTCT . 67.0 33.0 79.0 0.0 . 52 . . Atlas-SNP CAPZA2 830 hgsc.bcm.edu hg19 7 116544394 116544394 + Missense_Mutation SNP T T A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . CAPZA2 NM_006136 exon5 c.T383A p.L128Q CTGCTCTGAGAGC . 84.0 35.0 78.0 0.0 . 29 . . Atlas-SNP KIAA1456 57604 hgsc.bcm.edu hg19 8 12879028 12879028 + Missense_Mutation SNP C C A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . KIAA1456 NM_020844 exon5 c.C840A p.S280R CAGTAGCACTGTA . 145.0 43.0 123.0 0.0 . 20 . . Atlas-SNP EPB49 2039 hgsc.bcm.edu hg19 8 21924617 21924617 + Missense_Mutation SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . EPB49 NM_001978 exon3 c.A40G p.S14G CCCGGGAGCGTGA . 200.0 62.0 227.0 0.0 . 35 . . Atlas-SNP ELP3 55140 hgsc.bcm.edu hg19 8 28013470 28013470 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ELP3 NM_018091 exon11 c.T1112C p.M371T TTCCAATGCCTTT . 197.0 11.0 192.0 0.0 . 36 . . Atlas-SNP KIF13B 23303 hgsc.bcm.edu hg19 8 28974375 28974375 + Silent SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . KIF13B NM_015254 exon31 c.A3810G p.R1270R ACAGATTCTCTTG . 234.0 74.0 262.0 0.0 . 192 . . Atlas-SNP KIF13B 23303 hgsc.bcm.edu hg19 8 28974384 28974384 + Silent SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . KIF13B NM_015254 exon31 c.A3801G p.L1267L CTTGCGTAACACC . 247.0 76.0 274.0 0.0 . 192 . . Atlas-SNP PRKDC 5591 hgsc.bcm.edu hg19 8 48856412 48856412 + Splice_Site SNP C C A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PRKDC NM_001081640 exon10 c.808+1G>T . ATCCTACCTGAGG . 133.0 40.0 136.0 0.0 . 394 . . Atlas-SNP PXDNL 137902 hgsc.bcm.edu hg19 8 52323847 52323847 + Silent SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PXDNL NM_144651 exon16 c.T2025C p.R675R CTTCACACGTTCC . 227.0 71.0 179.0 0.0 . 414 . . Atlas-SNP RRS1 23212 hgsc.bcm.edu hg19 8 67341483 67341483 + Silent SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . RRS1 NM_015169 exon1 c.G117A p.L39L CAACCTGCTGGCG . 202.0 77.0 161.0 0.0 . 13 . . Atlas-SNP ARFGEF1 10565 hgsc.bcm.edu hg19 8 68130369 68130369 + Missense_Mutation SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ARFGEF1 NM_006421 exon31 c.C4343T p.A1448V CATTCAGCTTTCT . 138.0 46.0 196.0 0.0 . 196 . . Atlas-SNP LACTB2 51110 hgsc.bcm.edu hg19 8 71581340 71581340 + Nonsense_Mutation SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . LACTB2 NM_016027 exon1 c.C16T p.Q6X CGCGCTGCAGTAC . 98.0 7.0 100.0 0.0 . 26 . . Atlas-SNP INTS8 55656 hgsc.bcm.edu hg19 8 95892461 95892461 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . INTS8 NM_017864 exon27 c.A2987C p.X996S ACTTTTAAGCAGT . 107.0 36.0 88.0 0.0 . 92 . . Atlas-SNP RIMS2 9699 hgsc.bcm.edu hg19 8 104898096 104898096 + Silent SNP T T G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 RIMS2_ENST00000507740,NS,carcinoma,0,22 RIMS2 NM_001100117 exon4 c.T1269G p.S423S AAGTTCTTATGCA . 68.0 28.0 81.0 0.0 . 1357 . . Atlas-SNP TRMT10B 158234 hgsc.bcm.edu hg19 9 37776352 37776352 + Missense_Mutation SNP G G C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . . NM_144964 exon8 c.G794C p.R265T TGGTCAGAAACCA . 203.0 76.0 213.0 0.0 . . . . Atlas-SNP TLE1 7088 hgsc.bcm.edu hg19 9 84300807 84300807 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . TLE1 NM_005077 exon3 c.A130G p.K44E CCAATTTAAGGCT . 188.0 62.0 209.0 0.0 . 81 . . Atlas-SNP ZFP37 7539 hgsc.bcm.edu hg19 9 115805892 115805892 + Missense_Mutation SNP G G C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ZFP37 NM_003408 exon4 c.C1006G p.L336V CAACAAGGTGTGA . 128.0 46.0 177.0 0.0 . 93 . . Atlas-SNP ZNF618 114991 hgsc.bcm.edu hg19 9 116770657 116770657 + Missense_Mutation SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ZNF618 NM_133374 exon7 c.C578T p.A193V ACCGGGCAGGTAA . 112.0 34.0 123.0 0.0 . 184 . . Atlas-SNP CNTRL 11064 hgsc.bcm.edu hg19 9 123922548 123922548 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . CNTRL NM_007018 exon30 c.T5057C p.V1686A TTCAGGTTGTTTT . 200.0 56.0 234.0 0.0 . 161 . . Atlas-SNP GBGT1 26301 hgsc.bcm.edu hg19 9 136029633 136029633 + Silent SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . GBGT1 NM_021996 exon7 c.C375T p.I125I GGACTGGATGAAA . 23.0 11.0 26.0 0.0 . 25 . . Atlas-SNP ZNF22 7570 hgsc.bcm.edu hg19 10 45499035 45499035 + Missense_Mutation SNP C C A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ZNF22 NM_006963 exon2 c.C219A p.H73Q TCAACACCAGAAG . 43.0 12.0 47.0 0.0 . 28 . . Atlas-SNP ALOX5 240 hgsc.bcm.edu hg19 10 45891384 45891384 + Missense_Mutation SNP G G T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ALOX5 NM_000698 exon3 c.G431T p.R144L AATATCGGTGAGT . 132.0 42.0 150.0 0.0 . 88 . . Atlas-SNP LRRC27 80313 hgsc.bcm.edu hg19 10 134161592 134161592 + Missense_Mutation SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . LRRC27 NM_001143757 exon6 c.C658T p.P220S CAGGACCCAGAGG . 106.0 41.0 93.0 0.0 . 64 . . Atlas-SNP C11orf42 160298 hgsc.bcm.edu hg19 11 6231167 6231167 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . C11orf42 NM_173525 exon2 c.A160C p.K54Q CTGGTAAAACAGT . 105.0 34.0 105.0 0.0 . 35 . . Atlas-SNP ZNF215 7762 hgsc.bcm.edu hg19 11 6977459 6977459 + Missense_Mutation SNP C C A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ZNF215 NM_013250 exon7 c.C1251A p.N417K CTTCAACCGACGT . 43.0 14.0 38.0 0.0 . 72 . . Atlas-SNP CSNK2A3 283106 hgsc.bcm.edu hg19 11 11373655 11373655 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . . NM_001256686 exon1 c.A1012G p.S338G GCATGCTAGATGA . 99.0 40.0 94.0 0.0 . . . . Atlas-SNP PDHX 8050 hgsc.bcm.edu hg19 11 35006206 35006206 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PDHX NM_003477 exon9 c.A1113C p.K371N AGATAAAGGCTTA . 131.0 28.0 140.0 0.0 . 40 . . Atlas-SNP TMEM138 51524 hgsc.bcm.edu hg19 11 61131920 61131920 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . TMEM138 NM_016464 exon2 c.T58C p.Y20H CTGTCCTATGACC . 152.0 50.0 132.0 0.0 . 16 . . Atlas-SNP TAF6L 10629 hgsc.bcm.edu hg19 11 62554224 62554224 + Missense_Mutation SNP G G C rs377750789 alternate_allele TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . TAF6L NM_006473 exon11 c.G1325C p.R442P TCTACCGGGAGCT . 78.0 29.0 47.0 0.0 . 39 . . Atlas-SNP SLC22A25 387601 hgsc.bcm.edu hg19 11 62931493 62931493 + Missense_Mutation SNP C C A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . SLC22A25 NM_199352 exon9 c.G1447T p.A483S GGGAAGCCAGGGC . 286.0 97.0 295.0 0.0 . 87 . . Atlas-SNP VPS51 738 hgsc.bcm.edu hg19 11 64877952 64877952 + Splice_Site SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . . NM_013265 exon8 c.1879-2A>G . ACCACCAGGTGGG . 148.0 59.0 149.0 0.0 . . . . Atlas-SNP SCYL1 57410 hgsc.bcm.edu hg19 11 65293085 65293085 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . SCYL1 NM_020680 exon2 c.A152C p.K51T ATGTGAAGCCTGG . 122.0 38.0 109.0 0.0 . 76 . . Atlas-SNP PC 5091 hgsc.bcm.edu hg19 11 66618658 66618658 + Silent SNP C C G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PC NM_000920 exon16 c.G2076C p.A692A TCCTGCCGCCTCC . 66.0 28.0 48.0 0.0 . 116 . . Atlas-SNP RAD9A 5883 hgsc.bcm.edu hg19 11 67163617 67163617 + Missense_Mutation SNP T T A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . RAD9A NM_004584 exon8 c.T705A p.N235K CTTGAATCTTAGC . 142.0 51.0 145.0 0.0 . 15 . . Atlas-SNP RAD9A 5883 hgsc.bcm.edu hg19 11 67163618 67163618 + Missense_Mutation SNP C C G rs185216264 bycluster;by1000genomes;alternate_allele TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . RAD9A NM_004584 exon8 c.C706G p.L236V TTGAATCTTAGCA . 140.0 51.0 141.0 0.0 . 15 . C|1.000;T|0.000 Atlas-SNP ZW10 9183 hgsc.bcm.edu hg19 11 113619110 113619110 + Missense_Mutation SNP T T G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ZW10 NM_004724 exon8 c.A958C p.K320Q ATGTTTTTTCATT . 196.0 67.0 167.0 0.0 . 49 . . Atlas-SNP ZBTB16 7704 hgsc.bcm.edu hg19 11 114113007 114113007 + Silent SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ZBTB16 NM_006006 exon5 c.C1572T p.N524N GTGCAACCGCACC . 124.0 49.0 126.0 0.0 . 101 . . Atlas-SNP NOP2 4839 hgsc.bcm.edu hg19 12 6673088 6673088 + Missense_Mutation SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . NOP2 NM_001258309 exon7 c.C598T p.R200W GCTTCCGAGCAGC . 82.0 28.0 81.0 0.0 . 44 . . Atlas-SNP A2M 2 hgsc.bcm.edu hg19 12 9221388 9221388 + Silent SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . A2M NM_000014 exon34 c.A4314G p.P1438P TCTTACTGGGACA . 163.0 33.0 178.0 0.0 . 180 . . Atlas-SNP ALG10B 144245 hgsc.bcm.edu hg19 12 38714457 38714457 + Silent SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ALG10B NM_001013620 exon3 c.T864C p.F288F TCATTTTCCTCAA . 382.0 137.0 343.0 0.0 . 58 . . Atlas-SNP METTL7A 25840 hgsc.bcm.edu hg19 12 51323795 51323795 + Silent SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . METTL7A NM_014033 exon2 c.T597C p.F199F TCTGTTTGATGGG . 97.0 26.0 112.0 0.0 . 19 . . Atlas-SNP CNPY2 10330 hgsc.bcm.edu hg19 12 56708923 56708923 + Missense_Mutation SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . CNPY2 NM_014255 exon2 c.C79T p.H27Y CACAGTGGAGATC . 136.0 53.0 125.0 0.0 . 16 . . Atlas-SNP LRP1 4035 hgsc.bcm.edu hg19 12 57601983 57601983 + Missense_Mutation SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . LRP1 NM_002332 exon77 c.G12022A p.V4008M ATTGTGGTGGACC . 128.0 37.0 108.0 0.0 . 428 . . Atlas-SNP MON2 23041 hgsc.bcm.edu hg19 12 62929480 62929480 + Missense_Mutation SNP T T C rs201313378 alternate_allele TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . MON2 NM_015026 exon14 c.T1891C p.S631P ACACTTTCCAACA . 180.0 61.0 206.0 0.0 . 160 . T|0.999;G|0.001 Atlas-SNP PHLDA1 22822 hgsc.bcm.edu hg19 12 76425350 76425350 + Missense_Mutation SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PHLDA1 NM_007350 exon1 c.G172A p.D58N TGCCGTCCTCTTG . 155.0 66.0 122.0 0.0 . 39 . . Atlas-SNP EID3 493861 hgsc.bcm.edu hg19 12 104698075 104698075 + Silent SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . EID3 NM_001008394 exon1 c.C363T p.D121D TTGTGACTTTCTG . 251.0 80.0 218.0 0.0 . 28 . . Atlas-SNP SART3 9733 hgsc.bcm.edu hg19 12 108932816 108932816 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . SART3 NM_014706 exon7 c.T956G p.F319C ATCTCAAAATCGA . 163.0 64.0 145.0 0.0 . 64 . . Atlas-SNP RXFP2 122042 hgsc.bcm.edu hg19 13 32371491 32371491 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 RXFP2,colon,carcinoma,0,1 RXFP2 NM_130806 exon17 c.A1940C p.D647A TCTCTGATGCCAT . 229.0 94.0 186.0 0.0 . 95 . . Atlas-SNP ITM2B 9445 hgsc.bcm.edu hg19 13 48832330 48832330 + Silent SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ITM2B NM_021999 exon4 c.T522C p.V174V CATTGTTATGCCA . 231.0 12.0 206.0 0.0 . 24 . . Atlas-SNP UBAC2 337867 hgsc.bcm.edu hg19 13 99853763 99853763 + Missense_Mutation SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . UBAC2 NM_177967 exon1 c.G98A p.G33E GCGAGGGAGCGCA . 501.0 166.0 503.0 0.0 . 23 . . Atlas-SNP TNFSF13B 10673 hgsc.bcm.edu hg19 13 108922722 108922722 + Missense_Mutation SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 TNFSF13B,NS,malignant_melanoma,0,1 TNFSF13B NM_006573 exon2 c.C374T p.S125F GCAACTCCAGTCA . 93.0 33.0 97.0 0.0 . 25 . . Atlas-SNP OR4Q3 441669 hgsc.bcm.edu hg19 14 20215878 20215878 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . OR4Q3 NM_172194 exon1 c.T292C p.C98R TCAGGATGCCTGG . 92.0 38.0 65.0 0.0 . 117 . . Atlas-SNP MBIP 51562 hgsc.bcm.edu hg19 14 36785921 36785921 + Missense_Mutation SNP T T G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . MBIP NM_016586 exon2 c.A227C p.E76A TGTTGTTCAAGTG . 230.0 63.0 217.0 0.0 . 25 . . Atlas-SNP KIAA0586 9786 hgsc.bcm.edu hg19 14 58895077 58895077 + Missense_Mutation SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . KIAA0586 NM_001244189 exon2 c.A131G p.H44R GAGATCATTTGGT . 257.0 82.0 225.0 0.0 . 180 . . Atlas-SNP HSPA2 3306 hgsc.bcm.edu hg19 14 65008467 65008467 + Silent SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . HSPA2 NM_021979 exon1 c.C900T p.I300I GTCCATCACGCGC . 89.0 34.0 65.0 0.0 . 83 . . Atlas-SNP FCF1 51077 hgsc.bcm.edu hg19 14 75190045 75190045 + Silent SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . FCF1 NM_015962 exon5 c.A363C p.L121L GGCTCTAAGGTAG . 137.0 48.0 198.0 0.0 . 15 . . Atlas-SNP NOXRED1 122945 hgsc.bcm.edu hg19 14 77873885 77873885 + Silent SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . NOXRED1 NM_001113475 exon3 c.T453C p.N151N GCAGATATTAGGC . 133.0 47.0 156.0 0.0 . 23 . . Atlas-SNP SPTLC2 9517 hgsc.bcm.edu hg19 14 78021746 78021746 + Missense_Mutation SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . SPTLC2 NM_004863 exon8 c.G1073A p.G358D ACCACACCCCGGC . 127.0 46.0 164.0 0.0 . 55 . . Atlas-SNP RIN3 79890 hgsc.bcm.edu hg19 14 93154522 93154522 + Silent SNP G G T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . RIN3 NM_024832 exon10 c.G2883T p.R961R CTACCGGCCCCTG . 41.0 19.0 29.0 0.0 . 81 . . Atlas-SNP RIN3 79890 hgsc.bcm.edu hg19 14 93154523 93154523 + Missense_Mutation SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . RIN3 NM_024832 exon10 c.C2884T p.P962S TACCGGCCCCTGG . 40.0 19.0 29.0 0.0 . 81 . . Atlas-SNP PACS2 23241 hgsc.bcm.edu hg19 14 105818768 105818768 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 PACS2,lower_third,carcinoma,0,2 PACS2 NM_001100913 exon3 c.A261C p.Q87H TGGACAAGTGGAG . 205.0 72.0 212.0 0.0 . 75 . . Atlas-SNP HERC2 8924 hgsc.bcm.edu hg19 15 28482110 28482110 + Silent SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . HERC2 NM_004667 exon26 c.C4002T p.A1334A CTTACTGGCACAT . 306.0 107.0 300.0 0.0 . 501 . . Atlas-SNP TJP1 7082 hgsc.bcm.edu hg19 15 30011153 30011153 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . TJP1 NM_003257 exon21 c.A3193G p.S1065G TATAGCTTGAGGA . 355.0 103.0 424.0 1.0 . 140 . . Atlas-SNP HERC1 8925 hgsc.bcm.edu hg19 15 63943568 63943568 + Missense_Mutation SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . HERC1 NM_003922 exon53 c.C10430T p.A3477V TCCTCAGCATCCC . 75.0 32.0 90.0 0.0 . 624 . . Atlas-SNP HERC1 8925 hgsc.bcm.edu hg19 15 63967194 63967194 + Missense_Mutation SNP T T A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . HERC1 NM_003922 exon38 c.A7193T p.Y2398F GTGAGATATGTTA . 260.0 83.0 317.0 0.0 . 624 . . Atlas-SNP PSMA4 5685 hgsc.bcm.edu hg19 15 78837279 78837279 + Missense_Mutation SNP A A T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PSMA4 NM_001102667 exon6 c.A356T p.Q119L TCAAACAAGCTTA . 73.0 23.0 93.0 0.0 . 17 . . Atlas-SNP CIB1 10519 hgsc.bcm.edu hg19 15 90773726 90773726 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . CIB1 NM_006384 exon7 c.T566G p.I189S AGGACAATCTTAA . 166.0 56.0 178.0 0.0 . 8 . . Atlas-SNP RAB40C 57799 hgsc.bcm.edu hg19 16 677600 677600 + Missense_Mutation SNP G G C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . RAB40C NM_021168 exon6 c.G824C p.R275P GCTCGCGGAGTAA . 81.0 24.0 90.0 0.0 . 32 . . Atlas-SNP PKD1 5310 hgsc.bcm.edu hg19 16 2140513 2140513 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PKD1 NM_001009944 exon45 c.A12217G p.T4073A ACAGGGTAGAGAG . 76.0 28.0 52.0 0.0 . 184 . . Atlas-SNP GRIN2A 2903 hgsc.bcm.edu hg19 16 10273990 10273990 + Silent SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . GRIN2A NM_000833 exon3 c.A279G p.A93A GATGCGTGCCCCG . 178.0 35.0 170.0 0.0 . 366 . . Atlas-SNP LITAF 9516 hgsc.bcm.edu hg19 16 11647418 11647418 + Missense_Mutation SNP C C A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . LITAF NM_001136473 exon3 c.G348T p.W116C GGACAGCCAGGTC . 50.0 12.0 48.0 0.0 . 16 . . Atlas-SNP KIAA0556 23247 hgsc.bcm.edu hg19 16 27788950 27788950 + Missense_Mutation SNP T T G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 KIAA0556_ENST00000261588,caecum,carcinoma,0,2 KIAA0556 NM_015202 exon26 c.T4571G p.L1524R ACCTGCTTGTGTA . 95.0 33.0 122.0 0.0 . 348 . . Atlas-SNP N4BP1 9683 hgsc.bcm.edu hg19 16 48596057 48596057 + Missense_Mutation SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . N4BP1 NM_153029 exon2 c.C497T p.A166V GCATGGGCTTCAA . 178.0 58.0 147.0 0.0 . 121 . . Atlas-SNP AMFR 267 hgsc.bcm.edu hg19 16 56443342 56443342 + Silent SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . AMFR NM_001144 exon3 c.T507C p.F169F ATATTCAAATCGA . 66.0 19.0 71.0 0.0 . 40 . . Atlas-SNP ZNF594 84622 hgsc.bcm.edu hg19 17 5085970 5085970 + Missense_Mutation SNP G G T rs181984106 bycluster;by1000genomes;alternate_allele TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ZNF594 NM_032530 exon2 c.C1582A p.R528S CTGTGCGCCAAAT . 160.0 61.0 166.0 0.0 . 89 . G|0.999;A|0.001 Atlas-SNP DNAH2 146754 hgsc.bcm.edu hg19 17 7721651 7721651 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . DNAH2 NM_020877 exon68 c.T10409C p.I3470T TGCGCATTGGCGA . 236.0 70.0 185.0 0.0 . 498 . . Atlas-SNP MYOCD 93649 hgsc.bcm.edu hg19 17 12642602 12642602 + Missense_Mutation SNP T T G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . MYOCD NM_001146312 exon7 c.T674G p.L225R AGGGGCTTGGCCC . 55.0 25.0 57.0 0.0 . 291 . . Atlas-SNP TVP23C 201158 hgsc.bcm.edu hg19 17 15406305 15406305 + Missense_Mutation SNP T T A rs141163711 alternate_allele TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 FAM18B2,NS,carcinoma,0,1 . NM_145301 exon6 c.A704T p.Q235L GCCATCTGTTGGC . 132.0 36.0 148.0 0.0 . . . T|1.000;C|0.000 Atlas-SNP KSR1 8844 hgsc.bcm.edu hg19 17 25928943 25928943 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . KSR1 NM_014238 exon12 c.A1124C p.K375T GCTGGAAATGCCT . 143.0 42.0 126.0 0.0 . 151 . . Atlas-SNP NF1 4763 hgsc.bcm.edu hg19 17 29496954 29496954 + Silent SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . NF1 NM_001128147 exon5 c.T525C p.H175H TGTTCATGATATA . 84.0 28.0 64.0 0.0 . 1586 . . Atlas-SNP ACACA 31 hgsc.bcm.edu hg19 17 35631111 35631111 + Silent SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ACACA NM_198834 exon9 c.T981C p.Y327Y TTTCACATAACCT . 163.0 52.0 165.0 0.0 . 395 . . Atlas-SNP KRT40 125115 hgsc.bcm.edu hg19 17 39140461 39140461 + Missense_Mutation SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . KRT40 NM_182497 exon3 c.C65T p.A22V GCAGGTGCACAAC . 140.0 59.0 109.0 0.0 . 27 . . Atlas-SNP ZNF652 22834 hgsc.bcm.edu hg19 17 47390068 47390068 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ZNF652 NM_001145365 exon3 c.A1040G p.H347R ACCATGTGTTTCC . 121.0 32.0 80.0 0.0 . 54 . . Atlas-SNP SLC35B1 10237 hgsc.bcm.edu hg19 17 47781491 47781491 + Missense_Mutation SNP T T G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . SLC35B1 NM_005827 exon6 c.A626C p.N209T CAAAGGTTGATGT . 395.0 127.0 279.0 0.0 . 21 . . Atlas-SNP PDK2 5164 hgsc.bcm.edu hg19 17 48174927 48174927 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PDK2 NM_002611 exon2 c.T259C p.W87R CAGAGCTGGTGAG . 62.0 16.0 42.0 0.0 . 41 . . Atlas-SNP MTMR4 9110 hgsc.bcm.edu hg19 17 56584192 56584192 + Silent SNP T T G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . MTMR4 NM_004687 exon10 c.A903C p.A301A AGGAGCTGCTGTG . 114.0 18.0 80.0 0.0 . 91 . . Atlas-SNP PECAM1 5175 hgsc.bcm.edu hg19 17 62407077 62407077 + Missense_Mutation SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . . NM_000442 exon1 c.G7A p.V3M TTTCCACGGCATC . 101.0 42.0 72.0 0.0 . . . . Atlas-SNP AXIN2 8313 hgsc.bcm.edu hg19 17 63534326 63534326 + Nonsense_Mutation SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . AXIN2 NM_004655 exon5 c.C1195T p.R399X CCTCTCGGATCTG . 204.0 55.0 173.0 0.0 . 92 . . Atlas-SNP CD300LB 124599 hgsc.bcm.edu hg19 17 72518964 72518964 + Missense_Mutation SNP C C G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . CD300LB NM_174892 exon4 c.G630C p.K210N AGACCCCTTCAAC . 307.0 86.0 229.0 0.0 . 38 . . Atlas-SNP CCDC137 339230 hgsc.bcm.edu hg19 17 79639185 79639185 + Silent SNP G G A rs373550389 TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . CCDC137 NM_199287 exon5 c.G660A p.Q220Q GGACCAGGTAAGT . 140.0 77.0 128.0 0.0 . 27 . . Atlas-SNP FASN 2194 hgsc.bcm.edu hg19 17 80037282 80037282 + Missense_Mutation SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . FASN NM_004104 exon42 c.C7349T p.T2450M CCACCCGTCTTGG . 185.0 51.0 150.0 0.0 . 154 . . Atlas-SNP FASN 2194 hgsc.bcm.edu hg19 17 80039907 80039907 + Missense_Mutation SNP T T G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . FASN NM_004104 exon36 c.A6141C p.K2047N CCGGCGTTTCTCA . 76.0 16.0 39.0 0.0 . 154 . . Atlas-SNP ENOSF1 55556 hgsc.bcm.edu hg19 18 683313 683313 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ENOSF1 NM_202758 exon11 c.T872G p.F291C GGCTTGAACTTGG . 266.0 90.0 238.0 0.0 . 44 . . Atlas-SNP LAMA3 3909 hgsc.bcm.edu hg19 18 21418835 21418835 + Missense_Mutation SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . LAMA3 NM_001127717 exon26 c.A3184G p.N1062D TTTGTCAATCAAA . 258.0 74.0 314.0 0.0 . 397 . . Atlas-SNP ZNF397 84307 hgsc.bcm.edu hg19 18 32826113 32826113 + Nonsense_Mutation SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ZNF397 NM_001135178 exon4 c.C1444T p.Q482X CCTTATCAGTGTA . 169.0 64.0 172.0 0.0 . 51 . . Atlas-SNP GALNT1 2589 hgsc.bcm.edu hg19 18 33267146 33267146 + Missense_Mutation SNP G G C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . GALNT1 NM_020474 exon5 c.G856C p.V286L CTTCCTGTCAGGT . 88.0 21.0 135.0 0.0 . 53 . . Atlas-SNP FBN3 84467 hgsc.bcm.edu hg19 19 8211044 8211044 + Missense_Mutation SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . FBN3 NM_032447 exon3 c.G316A p.G106R GCGTCCCATCCGC . 269.0 15.0 274.0 0.0 . 300 . . Atlas-SNP ACTL9 284382 hgsc.bcm.edu hg19 19 8807893 8807893 + Silent SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ACTL9 NM_178525 exon1 c.C1159T p.L387L AGGCCAGGATGGA . 102.0 29.0 107.0 0.0 . 74 . . Atlas-SNP ZNF560 147741 hgsc.bcm.edu hg19 19 9578276 9578276 + Silent SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ZNF560 NM_152476 exon10 c.A1347G p.G449G CAAATGTCCAAAA . 131.0 56.0 146.0 0.0 . 162 . . Atlas-SNP PDE4A 5141 hgsc.bcm.edu hg19 19 10531543 10531543 + Silent SNP C C A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PDE4A NM_001111307 exon1 c.C103A p.R35R CTGTGGCGGCAGC . 20.0 12.0 24.0 0.0 . 236 . . Atlas-SNP KEAP1 9817 hgsc.bcm.edu hg19 19 10610398 10610398 + Missense_Mutation SNP G G T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . KEAP1 NM_012289 exon2 c.C312A p.S104R GACAGGGCTGGAT . 157.0 55.0 145.0 0.0 . 182 . . Atlas-SNP LPHN1 22859 hgsc.bcm.edu hg19 19 14261860 14261860 + Missense_Mutation SNP G G T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . LPHN1 NM_001008701 exon24 c.C4250A p.P1417H GGGCCGGGGGGTG . 91.0 42.0 41.0 0.0 . 107 . . Atlas-SNP ZNF675 171392 hgsc.bcm.edu hg19 19 23837293 23837293 + Missense_Mutation SNP T T G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ZNF675 NM_138330 exon4 c.A442C p.K148Q CATATTTATCACA . 119.0 6.0 97.0 0.0 . 88 . . Atlas-SNP ZFP82 284406 hgsc.bcm.edu hg19 19 36884388 36884388 + Missense_Mutation SNP T T G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ZFP82 NM_133466 exon5 c.A854C p.K285T CACTCTTTACACA . 121.0 64.0 118.0 0.0 . 71 . . Atlas-SNP POU2F2 5452 hgsc.bcm.edu hg19 19 42599725 42599725 + Missense_Mutation SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . POU2F2 NM_001207025 exon10 c.G926A p.R309H GCGAAGCGGACGT . 77.0 11.0 88.0 0.0 . 106 . . Atlas-SNP ERCC2 2068 hgsc.bcm.edu hg19 19 45860557 45860557 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ERCC2 NM_000400 exon15 c.A1450G p.T484A CCAGCGTCATGGT . 169.0 66.0 179.0 0.0 . 78 . . Atlas-SNP TEAD2 8463 hgsc.bcm.edu hg19 19 49845749 49845749 + Missense_Mutation SNP C C G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . TEAD2 NM_001256660 exon12 c.G1188C p.Q396H AGGCAGCTGCCGC . 181.0 63.0 154.0 0.0 . 70 . . Atlas-SNP ZNF432 9668 hgsc.bcm.edu hg19 19 52538392 52538392 + Silent SNP A A T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ZNF432 NM_014650 exon5 c.T540A p.S180S ACTTACAGAGAAT . 100.0 30.0 81.0 0.0 . 172 . . Atlas-SNP NLRP11 204801 hgsc.bcm.edu hg19 19 56320455 56320455 + Silent SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . NLRP11 NM_145007 exon5 c.T1521G p.L507L TGTCTCAAGAATC . 177.0 58.0 189.0 0.0 . 139 . . Atlas-SNP TCF15 6939 hgsc.bcm.edu hg19 20 590855 590855 + Silent SNP G G A rs45526442 TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . TCF15 NM_004609 exon1 c.C27T p.V9V CGCGCCGACGGGC . 10.0 6.0 4.0 0.0 . 6 . G|0.950;A|0.050 Atlas-SNP NOP56 10528 hgsc.bcm.edu hg19 20 2633966 2633966 + Missense_Mutation SNP C C G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . NOP56 NM_006392 exon3 c.C135G p.I45M CAGCATCGTTCGT . 261.0 44.0 303.0 0.0 . 73 . . Atlas-SNP FAM83C 128876 hgsc.bcm.edu hg19 20 33875240 33875240 + Missense_Mutation SNP G G A rs375816362 TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . FAM83C NM_178468 exon4 c.C1342T p.R448C GGGAGCGAGGAAG . 86.0 35.0 101.0 0.0 . 80 . . Atlas-SNP KIAA1755 85449 hgsc.bcm.edu hg19 20 36848153 36848153 + Missense_Mutation SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . KIAA1755 NM_001029864 exon11 c.C2435T p.A812V GCAGTGGCTGCAG . 97.0 25.0 86.0 0.0 . 145 . . Atlas-SNP SIM2 6493 hgsc.bcm.edu hg19 21 38117328 38117328 + Silent SNP C C T novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . SIM2 NM_005069 exon10 c.C1467T p.C489C TGAATGCCAGTGG . 128.0 38.0 116.0 0.0 . 55 . . Atlas-SNP KCNJ15 3772 hgsc.bcm.edu hg19 21 39671772 39671772 + Missense_Mutation SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . KCNJ15 NM_170736 exon3 c.A589G p.S197G TTGGTGATTCAGG . 67.0 16.0 61.0 0.0 . 43 . . Atlas-SNP IGSF5 150084 hgsc.bcm.edu hg19 21 41160116 41160116 + Splice_Site SNP G G A novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . IGSF5 NM_001080444 exon6 c.956+1G>A . TCAAAAGTAAGTT . 197.0 10.0 186.0 0.0 . 62 . . Atlas-SNP SPECC1L 23384 hgsc.bcm.edu hg19 22 24718668 24718668 + Missense_Mutation SNP A A G rs200752862 alternate_allele TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . SPECC1L NM_001145468 exon4 c.A1720G p.I574V GACCAGATAGAGA . 79.0 27.0 71.0 0.0 . 85 . . Atlas-SNP SPECC1L 23384 hgsc.bcm.edu hg19 22 24718674 24718674 + Missense_Mutation SNP A A C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . SPECC1L NM_001145468 exon4 c.A1726C p.M576L ATAGAGATGAATC . 82.0 27.0 66.0 0.0 . 85 . . Atlas-SNP ADRBK2 157 hgsc.bcm.edu hg19 22 26117279 26117279 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ADRBK2 NM_005160 exon20 c.T1820C p.L607P AGATTCTCTCTGT . 336.0 113.0 266.0 0.0 . 78 . . Atlas-SNP WWC3 55841 hgsc.bcm.edu hg19 X 10094158 10094158 + Missense_Mutation SNP A A G novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . WWC3 NM_015691 exon15 c.A1918G p.I640V AGCCACATCCGAG . 121.0 79.0 112.0 0.0 . 142 . . Atlas-SNP SEPT6 23157 hgsc.bcm.edu hg19 X 118827051 118827051 + Missense_Mutation SNP T T C novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . SEPT6 NM_145802 exon1 c.A18G p.I6M GCGAGCTATATCG . 122.0 77.0 185.0 0.0 . 53 . . Atlas-SNP C19orf24 55009 hgsc.bcm.edu hg19 19 1275790 1275792 + In_Frame_Del DEL GCG GCG - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 GCG GCG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . C19orf24 NM_017914 exon1 c.241_243del p.81_81del . . 70.0 50.0 32.0 0.0 . 6 . . Atlas-Indel,Pindel C21orf91 54149 hgsc.bcm.edu hg19 21 19168929 19168942 + Frame_Shift_Del DEL TCTGGACATTAGCC TCTGGACATTAGCC - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 TCTGGACATTAGCC TCTGGACATTAGCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . C21orf91 NM_017447 exon3 c.622_635del p.208_212del . . 250.0 50.0 261.0 0.0 . 21 . . Atlas-Indel,Pindel PHLDB2 90102 hgsc.bcm.edu hg19 3 111632427 111632427 + Frame_Shift_Del DEL T T - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 PHLDB2_ENST00000431670,NS,carcinoma,0,3 PHLDB2 NM_001134437 exon4 c.1677delC p.F559fs . . 144.0 51.0 115.0 0.0 . 449 . . Atlas-Indel,Pindel FREM2 341640 hgsc.bcm.edu hg19 13 39263846 39263886 + Frame_Shift_Del DEL CCGGGTCAAGAACTGGGCGTGGCTACTCGAGTGGCCCAGTT CCGGGTCAAGAACTGGGCGTGGCTACTCGAGTGGCCCAGTT - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 CCGGGTCAAGAACTGGGCGTGGCTACTCGAGTGGCCCAGTT CCGGGTCAAGAACTGGGCGTGGCTACTCGAGTGGCCCAGTT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 FREM2,caecum,carcinoma,0,1 FREM2 NM_207361 exon1 c.2364_2404del p.788_802del . . 76.0 14.0 92.0 0.0 . 385 . . Atlas-Indel,Pindel TMEM33 55161 hgsc.bcm.edu hg19 4 41941291 41941298 + Frame_Shift_Del DEL ATTACCAC ATTACCAC - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 ATTACCAC ATTACCAC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . TMEM33 NM_018126 exon3 c.218_225del p.73_75del . . 217.0 17.0 274.0 0.0 . 17 . . Atlas-INDEL PAIP2 51247 hgsc.bcm.edu hg19 5 138704424 138704429 + In_Frame_Del DEL CAAGAG CAAGAG - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 CAAGAG CAAGAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PAIP2 NM_016480 exon4 c.320_325del p.107_109del . . 132.0 25.0 162.0 0.0 . 10 . . Atlas-Indel,Pindel HSFY1 86614 hgsc.bcm.edu hg19 Y 20708853 20708853 + Frame_Shift_Del DEL A A - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . . NM_152584 exon1 c.179delC p.P60fs . . 174.0 63.0 147.0 0.0 . . . . Atlas-INDEL ZNF383 163087 hgsc.bcm.edu hg19 19 37734483 37734484 + Frame_Shift_Del DEL CC CC - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 CC CC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . ZNF383 NM_152604 exon5 c.1344_1345del p.448_449del . . 63.0 20.0 78.0 0.0 . 42 . . Atlas-Indel,Pindel VPS53 55275 hgsc.bcm.edu hg19 17 531471 531479 + Frame_Shift_Del DEL TCTAGTAAA TCTAGTAAA - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 TCTAGTAAA TCTAGTAAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . VPS53 NM_001128159 exon9 c.688_689del p.230_230del . . 68.0 20.0 100.0 0.0 . 109 . . Atlas-Indel,Pindel STON1-GTF2A1L 286749 hgsc.bcm.edu hg19 2 48818840 48818841 + Frame_Shift_Del DEL AC AC - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 AC AC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . STON1-GTF2A1L NM_172311 exon3 c.1978_1979del p.660_660del . . 214.0 35.0 252.0 0.0 . 180 . . Atlas-INDEL GABRR1 2569 hgsc.bcm.edu hg19 6 89899882 89899890 + Frame_Shift_Del DEL TCACAGCTT TCACAGCTT - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 TCACAGCTT TCACAGCTT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . GABRR1 NM_002042 exon6 c.652_655del p.218_219del . . 97.0 19.0 143.0 0.0 . 63 . . Atlas-Indel,Pindel KEAP1 9817 hgsc.bcm.edu hg19 19 10602811 10602812 + Frame_Shift_Ins INS - - CGTA novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . KEAP1 NM_012289 exon3 c.767_768insTACG p.D256fs . . 103.0 18.0 84.0 0.0 . 182 . . Atlas-Indel,Pindel METTL7A 25840 hgsc.bcm.edu hg19 12 51323788 51323788 + Frame_Shift_Del DEL T T - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . METTL7A NM_014033 exon2 c.589delC p.L197fs . . 100.0 24.0 128.0 0.0 . 19 . . Atlas-Indel,Pindel MAGI2 9863 hgsc.bcm.edu hg19 7 78130892 78130893 + Splice_Site INS - - CT novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . MAGI2 NM_012301 exon6 c.965+2->AG . . . 139.0 44.0 160.0 0.0 . 246 . . Atlas-Indel,Pindel PTGR1 22949 hgsc.bcm.edu hg19 9 114341085 114341086 + Frame_Shift_Ins INS - - TT novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PTGR1 NM_001146108 exon7 c.642_643insAA p.Y214_F215delinsX . . 112.0 13.0 136.0 0.0 . 23 . . Atlas-INDEL PRKD2 25865 hgsc.bcm.edu hg19 19 47214295 47214320 + Frame_Shift_Del DEL GCTGTAGGCGGAAAATAGGGGTGGAT GCTGTAGGCGGAAAATAGGGGTGGAT - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 GCTGTAGGCGGAAAATAGGGGTGGAT GCTGTAGGCGGAAAATAGGGGTGGAT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PRKD2 NM_016457 exon3 c.380_381del p.127_127del . . 109.0 14.0 186.0 0.0 . 94 . . Atlas-INDEL LRP2 4036 hgsc.bcm.edu hg19 2 170033099 170033110 + Frame_Shift_Del DEL CTAGTGGAAAAG CTAGTGGAAAAG - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 CTAGTGGAAAAG CTAGTGGAAAAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . LRP2 NM_004525 exon54 c.10394_10394del p.3465_3465del . . 63.0 10.0 94.0 0.0 . 751 . . Atlas-Indel,Pindel HSFY1 86614 hgsc.bcm.edu hg19 Y 20935324 20935324 + Frame_Shift_Del DEL T T - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . . NM_152584 exon1 c.182delG p.S61fs . . 182.0 59.0 133.0 0.0 . . . . Atlas-INDEL PIGV 55650 hgsc.bcm.edu hg19 1 27124244 27124259 + Frame_Shift_Del DEL GTTCTCCAGTCACACG GTTCTCCAGTCACACG - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 GTTCTCCAGTCACACG GTTCTCCAGTCACACG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . PIGV NM_001202554 exon4 c.1390_1405del p.464_469del . . 109.0 23.0 148.0 0.0 . 47 . . Atlas-Indel,Pindel AP1G2 8906 hgsc.bcm.edu hg19 14 24031766 24031766 + Frame_Shift_Del DEL C C - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . AP1G2 NM_003917 exon15 c.1448delA p.E483fs . . 117.0 37.0 111.0 0.0 . 75 . . Atlas-Indel,Pindel SCAMP4 113178 hgsc.bcm.edu hg19 19 1924232 1924242 + Frame_Shift_Del DEL GCCCGAGTACC GCCCGAGTACC - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 GCCCGAGTACC GCCCGAGTACC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . SCAMP4 NM_079834 exon7 c.638_648del p.213_216del . . 35.0 13.0 75.0 0.0 . 7 . . Atlas-Indel,Pindel STON1-GTF2A1L 286749 hgsc.bcm.edu hg19 2 48818835 48818835 + Frame_Shift_Del DEL A A - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . STON1-GTF2A1L NM_172311 exon3 c.1973delG p.G658fs . . 213.0 36.0 255.0 0.0 . 180 . . Atlas-INDEL TMEM33 55161 hgsc.bcm.edu hg19 4 41941283 41941289 + Frame_Shift_Del DEL CATCAAA CATCAAA - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 CATCAAA CATCAAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . TMEM33 NM_018126 exon3 c.210_216del p.70_72del . . 222.0 17.0 273.0 0.0 . 17 . . Atlas-INDEL TMEM33 55161 hgsc.bcm.edu hg19 4 41941283 41941298 + Frame_Shift_Del DEL CATCAAAGATTACCAC CATCAAAGATTACCAC - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 CATCAAAGATTACCAC CATCAAAGATTACCAC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . TMEM33 NM_018126 exon3 c.210_225del p.70_75del . . 228.0 23.0 271.0 0.0 . 17 . . Pindel EPRS 2058 hgsc.bcm.edu hg19 1 220146578 220146633 + In_Frame_Del DEL CTACCTTGTGAAAAGGGTGACCTGGATGTCTTCCAAAATAGCTTGAAGTTTAGTCT CTACCTTGTGAAAAGGGTGACCTGGATGTCTTCCAAAATAGCTTGAAGTTTAGTCT - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 CTACCTTGTGAAAAGGGTGACCTGGATGTCTTCCAAAATAGCTTGAAGTTTAGTCT CTACCTTGTGAAAAGGGTGACCTGGATGTCTTCCAAAATAGCTTGAAGTTTAGTCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . EPRS NM_004446 exon29 c.4194_4244del p.1398_1415del . . 129.0 21.0 147.0 0.0 . 140 . . Pindel NUMA1 4926 hgsc.bcm.edu hg19 11 71723462 71723628 + Frame_Shift_Del DEL TCTCTGAAATACCTCTAGCTGCTCCACCTGTACATGGGGGAGGAGCAACAGAGACAGAGTGAGATGAGGCCAAAGAAGCACCAGCCCTGCTGCCAGGCTGACCTCACTGAGGCTCTGATACTTTCCCCTAAGGAGCTAGATTGACAGTAAGTTTAAAAATGCCAGTT TCTCTGAAATACCTCTAGCTGCTCCACCTGTACATGGGGGAGGAGCAACAGAGACAGAGTGAGATGAGGCCAAAGAAGCACCAGCCCTGCTGCCAGGCTGACCTCACTGAGGCTCTGATACTTTCCCCTAAGGAGCTAGATTGACAGTAAGTTTAAAAATGCCAGTT - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 TCTCTGAAATACCTCTAGCTGCTCCACCTGTACATGGGGGAGGAGCAACAGAGACAGAGTGAGATGAGGCCAAAGAAGCACCAGCCCTGCTGCCAGGCTGACCTCACTGAGGCTCTGATACTTTCCCCTAAGGAGCTAGATTGACAGTAAGTTTAAAAATGCCAGTT TCTCTGAAATACCTCTAGCTGCTCCACCTGTACATGGGGGAGGAGCAACAGAGACAGAGTGAGATGAGGCCAAAGAAGCACCAGCCCTGCTGCCAGGCTGACCTCACTGAGGCTCTGATACTTTCCCCTAAGGAGCTAGATTGACAGTAAGTTTAAAAATGCCAGTT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . NUMA1 NM_006185 exon16 c.4609_4636del p.1537_1546del . . 43.0 11.0 36.0 0.0 . 142 . . Pindel STON1-GTF2A1L 286749 hgsc.bcm.edu hg19 2 48818835 48818841 + Frame_Shift_Del DEL ATCAGAC ATCAGAC - novel TCGA-G3-A3CK-01A-11D-A20W-10 TCGA-G3-A3CK-10A-01D-A20W-10 ATCAGAC ATCAGAC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1127b561-ea40-4d5e-95df-daa0a5ebc1e4 b9244ba4-a36a-415f-8975-7e933dd7d8a4 . STON1-GTF2A1L NM_001198593 exon3 c.1973_1979del p.658_660del . . 221.0 27.0 252.0 0.0 . 180 . . Pindel