Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm CHD5 26038 hgsc.bcm.edu hg19 1 6196807 6196807 + Missense_Mutation SNP A A T novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . CHD5 NM_015557 exon16 c.T2555A p.L852H TTCTTGAGGCGGT . 53.0 17.0 80.0 0.0 . 267 . . Atlas-SNP UBAP2L 9898 hgsc.bcm.edu hg19 1 154221748 154221748 + Missense_Mutation SNP G G T rs200980910 by1000genomes;alternate_allele TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . UBAP2L NM_001127320 exon12 c.G1048T p.G350C GATGTCGGTGAAG . 231.0 13.0 170.0 0.0 . 197 . G|1.000;A|0.000 Atlas-SNP TNN 63923 hgsc.bcm.edu hg19 1 175048705 175048705 + Missense_Mutation SNP G G A novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 TNN,caecum,carcinoma,0,1 TNN NM_022093 exon3 c.G646A p.V216M CGCGGCGTGTGCC . 54.0 26.0 55.0 0.0 . 297 . . Atlas-SNP CEP350 9857 hgsc.bcm.edu hg19 1 180064893 180064893 + Missense_Mutation SNP T T C novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . CEP350 NM_014810 exon35 c.T8747C p.V2916A TGGCAGTCCCCCA . 140.0 32.0 73.0 0.0 . 418 . . Atlas-SNP PIK3C2B 5287 hgsc.bcm.edu hg19 1 204438107 204438107 + Missense_Mutation SNP G G A novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . PIK3C2B NM_002646 exon3 c.C824T p.A275V CTCCTGGCCACGG . 67.0 22.0 50.0 0.0 . 142 . . Atlas-SNP IKBKE 9641 hgsc.bcm.edu hg19 1 206649567 206649567 + Silent SNP C C T novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 IKBKE,NS,carcinoma,0,2 IKBKE NM_001193322 exon6 c.C402T p.R134R GCATCGCGACATC . 64.0 38.0 59.0 1.0 . 77 . . Atlas-SNP RTN4 57142 hgsc.bcm.edu hg19 2 55254616 55254616 + Missense_Mutation SNP T T C novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . RTN4 NM_020532 exon3 c.A619G p.M207V AGTCCATATTTTC . 50.0 16.0 22.0 0.0 . 189 . . Atlas-SNP RTN4 57142 hgsc.bcm.edu hg19 2 55254618 55254618 + Missense_Mutation SNP T T G novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . RTN4 NM_020532 exon3 c.A617C p.N206T TCCATATTTTCTG . 49.0 17.0 21.0 0.0 . 189 . . Atlas-SNP DHRS9 10170 hgsc.bcm.edu hg19 2 169938117 169938117 + Missense_Mutation SNP T T A novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . DHRS9 NM_005771 exon5 c.T26A p.L9Q GCCTCCTAATCCT . 50.0 11.0 31.0 0.0 . 29 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179648462 179648462 + Silent SNP T T C novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . TTN NM_001267550 exon17 c.A2826G p.P942P AGTTGGTGGAGTA . 161.0 76.0 96.0 0.0 . 18412 . . Atlas-SNP SLC39A10 57181 hgsc.bcm.edu hg19 2 196593015 196593015 + Missense_Mutation SNP C C A novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . SLC39A10 NM_020342 exon9 c.C2279A p.T760K ACATCACACTTTG . 315.0 151.0 162.0 0.0 . 89 . . Atlas-SNP ABCA12 26154 hgsc.bcm.edu hg19 2 215843664 215843664 + Missense_Mutation SNP C C T novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . ABCA12 NM_173076 exon32 c.G4841A p.G1614E AGCTCTCCCCCAA . 128.0 22.0 75.0 0.0 . 368 . . Atlas-SNP SLC19A3 80704 hgsc.bcm.edu hg19 2 228563990 228563990 + Silent SNP C C A novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . SLC19A3 NM_025243 exon3 c.G441T p.T147T GGCCAGCGTGACG . 43.0 9.0 31.0 0.0 . 62 . . Atlas-SNP TATDN2 9797 hgsc.bcm.edu hg19 3 10290922 10290922 + Missense_Mutation SNP G G T novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . TATDN2 NM_014760 exon2 c.G38T p.S13I ACTGGAGCAGCAC . 63.0 13.0 52.0 0.0 . 59 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41275047 41275047 + Missense_Mutation SNP C C T novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . CTNNB1 NM_001098209 exon9 c.C1213T p.L405F GGGACTCTTGTTC . 63.0 18.0 56.0 0.0 . 4904 . . Atlas-SNP STAB1 23166 hgsc.bcm.edu hg19 3 52549455 52549455 + Missense_Mutation SNP G G T novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . STAB1 NM_015136 exon37 c.G3881T p.S1294I GGAAGAGCTGTGT . 35.0 16.0 50.0 0.0 . 178 . . Atlas-SNP C3orf67 200844 hgsc.bcm.edu hg19 3 58855185 58855185 + Missense_Mutation SNP C C T novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . C3orf67 NM_198463 exon9 c.G509A p.R170Q CATGATCGGTTAT . 154.0 46.0 100.0 0.0 . 45 . . Atlas-SNP EPHA6 285220 hgsc.bcm.edu hg19 3 97202883 97202883 + Missense_Mutation SNP T T C novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . EPHA6 NM_001080448 exon10 c.T2180C p.I727T TTCGTATTGAGAG . 93.0 39.0 85.0 0.0 . 439 . . Atlas-SNP FAM193A 8603 hgsc.bcm.edu hg19 4 2698242 2698242 + Missense_Mutation SNP G G T novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . FAM193A NM_001256667 exon17 c.G2622T p.L874F TTTGTTGCAGTTT . 190.0 54.0 163.0 0.0 . 103 . . Atlas-SNP SLC30A9 10463 hgsc.bcm.edu hg19 4 42065035 42065035 + Missense_Mutation SNP C C T novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 SLC30A9,colon,carcinoma,-1,2 SLC30A9 NM_006345 exon11 c.C929T p.S310L TTTCTTCGCTAAT . 411.0 17.0 246.0 0.0 . 58 . . Atlas-SNP POLR2B 5431 hgsc.bcm.edu hg19 4 57860856 57860856 + Missense_Mutation SNP A A G novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . POLR2B NM_000938 exon5 c.A400G p.K134E GTCATTAAAGAAG . 46.0 29.0 54.0 0.0 . 108 . . Atlas-SNP CAPSL 133690 hgsc.bcm.edu hg19 5 35910562 35910562 + Missense_Mutation SNP A A T novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . CAPSL NM_144647 exon3 c.T221A p.V74D TCCATGACCACAG . 115.0 36.0 94.0 0.0 . 68 . . Atlas-SNP SLC35A4 113829 hgsc.bcm.edu hg19 5 139947621 139947621 + Silent SNP C C A novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . SLC35A4 NM_080670 exon3 c.C867A p.V289V GGTGGTCAACGCC . 61.0 23.0 52.0 0.0 . 25 . . Atlas-SNP PCDHB16 57717 hgsc.bcm.edu hg19 5 140563257 140563257 + Missense_Mutation SNP T T A rs377277959 TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . PCDHB16 NM_020957 exon1 c.T1123A p.S375T CCTGACTCCGGAA . 59.0 26.0 77.0 0.0 . 159 . . Atlas-SNP PGBD1 84547 hgsc.bcm.edu hg19 6 28269056 28269056 + Missense_Mutation SNP G G T novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . PGBD1 NM_001184743 exon7 c.G1425T p.R475S TAGAAGGGAAATG . 129.0 54.0 94.0 0.0 . 106 . . Atlas-SNP TOR2A 27433 hgsc.bcm.edu hg19 9 130494466 130494466 + Missense_Mutation SNP G G A rs370306195 alternate_allele TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . TOR2A NM_001134430 exon4 c.C685T p.R229C GAGCACGCAGTGC . 47.0 19.0 78.0 0.0 . 26 . . Atlas-SNP ZNF248 57209 hgsc.bcm.edu hg19 10 38121994 38121994 + Missense_Mutation SNP C C G novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . ZNF248 NM_001267597 exon6 c.G289C p.D97H GGTCATCTTCATT . 76.0 26.0 40.0 0.0 . 61 . . Atlas-SNP DPYSL4 10570 hgsc.bcm.edu hg19 10 134018356 134018356 + Silent SNP T T C novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . DPYSL4 NM_006426 exon14 c.T1641C p.D547D GGCTGATGACCAC . 68.0 29.0 86.0 0.0 . 91 . . Atlas-SNP USH1C 10083 hgsc.bcm.edu hg19 11 17530990 17530990 + Silent SNP A A G novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . USH1C NM_153676 exon18 c.T1926C p.N642N CACTGGATTGCCT . 91.0 21.0 96.0 0.0 . 157 . . Atlas-SNP TRAF6 7189 hgsc.bcm.edu hg19 11 36516546 36516546 + Missense_Mutation SNP T T C novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . TRAF6 NM_004620 exon5 c.A658G p.T220A GTATAGTATTGCA . 354.0 123.0 197.0 0.0 . 56 . . Atlas-SNP GYLTL1B 120071 hgsc.bcm.edu hg19 11 45948313 45948313 + Missense_Mutation SNP C C T novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . GYLTL1B NM_152312 exon10 c.C1216T p.R406W GAGTTCCGGCAGC . 34.0 16.0 32.0 0.0 . 45 . . Atlas-SNP OR4C3 256144 hgsc.bcm.edu hg19 11 48347263 48347263 + Silent SNP G G A novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . OR4C3 NM_001004702 exon1 c.G771A p.G257G AGATGGGAGATGC . 206.0 21.0 183.0 0.0 . 75 . . Atlas-SNP BTBD18 643376 hgsc.bcm.edu hg19 11 57512438 57512438 + Missense_Mutation SNP G G T novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . BTBD18 NM_001145101 exon3 c.C1307A p.S436Y TCTGGGGAGTGGC . 52.0 26.0 71.0 0.0 . 26 . . Atlas-SNP KRTAP5-7 440050 hgsc.bcm.edu hg19 11 71238415 71238415 + Silent SNP C C A novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . KRTAP5-7 NM_001012503 exon1 c.C69A p.G23G TGGGGGCTGTGGC . 131.0 12.0 107.0 0.0 . 23 . . Atlas-SNP BRAP 8315 hgsc.bcm.edu hg19 12 112093435 112093435 + Missense_Mutation SNP G G C novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . BRAP NM_006768 exon10 c.C1246G p.L416V ATTCCAGCTGGCT . 105.0 38.0 78.0 0.0 . 42 . . Atlas-SNP ZNF10 7556 hgsc.bcm.edu hg19 12 133733009 133733009 + Missense_Mutation SNP A A G novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . ZNF10 NM_015394 exon5 c.A1177G p.I393V CATCTCATTCTGC . 66.0 25.0 64.0 0.0 . 58 . . Atlas-SNP POMP 51371 hgsc.bcm.edu hg19 13 29242666 29242666 + Silent SNP A A G novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . POMP NM_015932 exon4 c.A219G p.L73L GGGTCTATTTGCT . 75.0 19.0 68.0 0.0 . 15 . . Atlas-SNP NBEA 26960 hgsc.bcm.edu hg19 13 35756573 35756573 + Missense_Mutation SNP G G A novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 NBEA,NS,carcinoma,0,1 NBEA NM_015678 exon29 c.G4739A p.R1580H AGTATCGTGACAT . 184.0 62.0 76.0 0.0 . 340 . . Atlas-SNP NOVA1 4857 hgsc.bcm.edu hg19 14 26917336 26917336 + Silent SNP A A T novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . NOVA1 NM_002515 exon5 c.T1353A p.T451T TGCACCAGTCAAC . 263.0 96.0 232.0 0.0 . 146 . . Atlas-SNP SLC10A1 6554 hgsc.bcm.edu hg19 14 70252897 70252897 + Missense_Mutation SNP A A G novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . SLC10A1 NM_003049 exon2 c.T484C p.S162P CCAGTGATATCAC . 76.0 36.0 70.0 0.0 . 32 . . Atlas-SNP HERC2 8924 hgsc.bcm.edu hg19 15 28465614 28465614 + Missense_Mutation SNP G G T novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . HERC2 NM_004667 exon37 c.C5829A p.D1943E CTCTGTGTCCGAA . 23.0 9.0 18.0 0.0 . 501 . . Atlas-SNP SLC12A1 6557 hgsc.bcm.edu hg19 15 48595052 48595052 + Silent SNP T T C novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . SLC12A1 NM_001184832 exon27 c.T3270C p.N1090N AGGAAATCACAAA . 89.0 31.0 66.0 0.0 . 243 . . Atlas-SNP TNFAIP8L3 388121 hgsc.bcm.edu hg19 15 51397266 51397266 + Silent SNP C C T novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . TNFAIP8L3 NM_207381 exon1 c.G108A p.R36R GGCATCCCTTGTG . 126.0 37.0 111.0 0.0 . 30 . . Atlas-SNP MEGF11 84465 hgsc.bcm.edu hg19 15 66209210 66209210 + Missense_Mutation SNP G G A novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . MEGF11 NM_032445 exon17 c.C2171T p.A724V TGGCAGGCCCCGT . 81.0 29.0 44.0 0.0 . 70 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7578271 7578271 + Missense_Mutation SNP T T C novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 TP53_ENST00000545858,NS,carcinoma,0,1 TP53 NM_000546 exon6 c.A578G p.H193R ATAAGATGCTGAG . 61.0 35.0 79.0 0.0 . 33396 . . Atlas-SNP DDX42 11325 hgsc.bcm.edu hg19 17 61890756 61890756 + Missense_Mutation SNP G G T novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . DDX42 NM_203499 exon15 c.G1844T p.R615L TGGTCCGGAACTT . 85.0 23.0 87.0 0.0 . 86 . . Atlas-SNP YES1 7525 hgsc.bcm.edu hg19 18 745776 745776 + Missense_Mutation SNP T T C novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . YES1 NM_005433 exon6 c.A656G p.N219S CCACCATTGTCAA . 152.0 62.0 103.0 0.0 . 50 . . Atlas-SNP ZNF91 7644 hgsc.bcm.edu hg19 19 23545393 23545393 + Missense_Mutation SNP C C A novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . ZNF91 NM_003430 exon4 c.G388T p.D130Y ACTCATCCACACT . 130.0 37.0 104.0 0.0 . 349 . . Atlas-SNP PCSK2 5126 hgsc.bcm.edu hg19 20 17208109 17208109 + Silent SNP C C T novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 PCSK2,colon,carcinoma,0,2 PCSK2 NM_002594 exon1 c.C159T p.H53H AGAACACGGCTTT . 86.0 33.0 80.0 0.0 . 112 . . Atlas-SNP HUNK 30811 hgsc.bcm.edu hg19 21 33296847 33296847 + Missense_Mutation SNP G G A novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . HUNK NM_014586 exon2 c.G329A p.R110Q TGCGGCGAGAGGG . 67.0 18.0 38.0 0.0 . 74 . . Atlas-SNP KRTAP10-12 386685 hgsc.bcm.edu hg19 21 46117591 46117591 + Missense_Mutation SNP C C T novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . KRTAP10-12 NM_198699 exon1 c.C475T p.P159S TGCAAGCCCATCT . 107.0 37.0 163.0 0.0 . 21 . . Atlas-SNP PLA2G6 8398 hgsc.bcm.edu hg19 22 38528998 38528998 + Missense_Mutation SNP C C T rs374007706 TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . PLA2G6 NM_003560 exon7 c.G917A p.R306Q CAGCCCCGTTTCA . 39.0 17.0 57.0 0.0 . 54 . . Atlas-SNP MGAT3 4248 hgsc.bcm.edu hg19 22 39883537 39883537 + Missense_Mutation SNP C C A novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . MGAT3 NM_002409 exon2 c.C185A p.P62H CCAGCCCCGAGCC . 47.0 18.0 60.0 0.0 . 65 . . Atlas-SNP PPARA 5465 hgsc.bcm.edu hg19 22 46615711 46615711 + Missense_Mutation SNP A A C novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . PPARA NM_001001928 exon6 c.A511C p.I171L CTAGCGATTCGTT . 43.0 22.0 25.0 0.0 . 36 . . Atlas-SNP GPR34 2857 hgsc.bcm.edu hg19 X 41555141 41555141 + Silent SNP A A G novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . GPR34 NM_001097579 exon3 c.A255G p.K85K CCGTAAAAGAAAT . 105.0 50.0 49.0 0.0 . 42 . . Atlas-SNP OCRL 4952 hgsc.bcm.edu hg19 X 128722192 128722192 + Missense_Mutation SNP C C T novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . OCRL NM_000276 exon21 c.C2293T p.L765F GAAGAGCTCCAGC . 35.0 28.0 27.0 0.0 . 117 . . Atlas-SNP ND1 10625 hgsc.bcm.edu hg19 MT 4112 4112 + Missense_Mutation SNP T T C novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . . ENST00000361390 exon1 c.T806C p.L269P CCTCCCTGTTCTT . 474.0 41.0 200.0 0.0 . . . . Atlas-SNP ND6 0 hgsc.bcm.edu hg19 MT 14423 14423 + Missense_Mutation SNP G G A novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . . ENST00000361681 exon1 c.C251T p.S84L ACCCCTGACCCCC . 710.0 223.0 277.0 0.0 . . . . Atlas-SNP SPRR3 6707 hgsc.bcm.edu hg19 1 152975806 152975829 + In_Frame_Del DEL CCAGGCTACACCAAGGTCCCTGAA CCAGGCTACACCAAGGTCCCTGAA - novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 CCAGGCTACACCAAGGTCCCTGAA CCAGGCTACACCAAGGTCCCTGAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . SPRR3 NM_001097589 exon2 c.309_332del p.103_111del . . 85.0 17.0 44.0 0.0 . 45 . . Atlas-INDEL PTPN3 5774 hgsc.bcm.edu hg19 9 112145782 112145782 + Frame_Shift_Del DEL C C - novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . PTPN3 NM_002829 exon23 c.2304delC p.G768fs . . 54.0 18.0 60.0 0.0 . 106 . . Atlas-Indel,Pindel MRPL11 65003 hgsc.bcm.edu hg19 11 66204833 66204833 + Frame_Shift_Del DEL C C - novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . MRPL11 NM_170739 exon3 c.302delC p.A101fs . . 42.0 12.0 75.0 0.0 . 25 . . Atlas-INDEL INTS10 55174 hgsc.bcm.edu hg19 8 19682357 19682358 + Frame_Shift_Ins INS - - A novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . INTS10 NM_018142 exon8 c.880_881insA p.Y294_M295delinsX . . 64.0 27.0 57.0 0.0 . 46 . . Atlas-INDEL ABCB1 5243 hgsc.bcm.edu hg19 7 87214868 87214868 + Frame_Shift_Del DEL T T - novel TCGA-G3-A25Z-01A-11D-A16V-10 TCGA-G3-A25Z-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3fd6af37-1d08-48ee-ab7f-162bb2005b98 543bf78c-8771-4841-84c6-cee5677bb250 . ABCB1 NM_000927 exon5 c.247delG p.G83fs . . 40.0 11.0 46.0 0.0 . 263 . . Atlas-INDEL