Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm KIF1B 23095 hgsc.bcm.edu hg19 1 10381913 10381913 + Missense_Mutation SNP A A C novel TCGA-G3-A25V-01A-11D-A16V-10 TCGA-G3-A25V-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4624fd20-e2ad-4826-b606-a694b04e1076 eac002f0-7695-4df1-8ff0-2c5c976279df . KIF1B NM_015074 exon22 c.A2218C p.K740Q AAAAAGAAGGTAT . 80.0 19.0 63.0 0.0 . 242 . . Atlas-SNP ST6GALNAC5 81849 hgsc.bcm.edu hg19 1 77528691 77528691 + Missense_Mutation SNP T T C novel TCGA-G3-A25V-01A-11D-A16V-10 TCGA-G3-A25V-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4624fd20-e2ad-4826-b606-a694b04e1076 eac002f0-7695-4df1-8ff0-2c5c976279df . ST6GALNAC5 NM_030965 exon5 c.T811C p.Y271H TATCATTATTATG . 117.0 12.0 89.0 0.0 . 59 . . Atlas-SNP ELTD1 64123 hgsc.bcm.edu hg19 1 79356902 79356902 + Splice_Site SNP C C T novel TCGA-G3-A25V-01A-11D-A16V-10 TCGA-G3-A25V-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4624fd20-e2ad-4826-b606-a694b04e1076 eac002f0-7695-4df1-8ff0-2c5c976279df . ELTD1 NM_022159 exon16 c.2011-1G>A . TTGAATCTAAAAA . 285.0 40.0 181.0 0.0 . 143 . . Atlas-SNP COL11A1 1301 hgsc.bcm.edu hg19 1 103343720 103343720 + Missense_Mutation SNP G G T novel TCGA-G3-A25V-01A-11D-A16V-10 TCGA-G3-A25V-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4624fd20-e2ad-4826-b606-a694b04e1076 eac002f0-7695-4df1-8ff0-2c5c976279df . COL11A1 NM_080629 exon67 c.C5312A p.S1771Y TTTCTGGACTGTA . 103.0 14.0 48.0 0.0 . 972 . . Atlas-SNP ELK4 2005 hgsc.bcm.edu hg19 1 205588972 205588972 + Missense_Mutation SNP C C T novel TCGA-G3-A25V-01A-11D-A16V-10 TCGA-G3-A25V-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4624fd20-e2ad-4826-b606-a694b04e1076 eac002f0-7695-4df1-8ff0-2c5c976279df . ELK4 NM_021795 exon3 c.G1202A p.C401Y GTCACACATAACC . 103.0 17.0 82.0 0.0 . 45 . . Atlas-SNP PGBD2 267002 hgsc.bcm.edu hg19 1 249211485 249211485 + Silent SNP C C T novel TCGA-G3-A25V-01A-11D-A16V-10 TCGA-G3-A25V-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4624fd20-e2ad-4826-b606-a694b04e1076 eac002f0-7695-4df1-8ff0-2c5c976279df . PGBD2 NM_170725 exon3 c.C702T p.N234N TAACAACGAACTT . 42.0 8.0 37.0 0.0 . 103 . . Atlas-SNP RANBP2 5903 hgsc.bcm.edu hg19 2 109347859 109347859 + Nonsense_Mutation SNP G G T novel TCGA-G3-A25V-01A-11D-A16V-10 TCGA-G3-A25V-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4624fd20-e2ad-4826-b606-a694b04e1076 eac002f0-7695-4df1-8ff0-2c5c976279df . RANBP2 NM_006267 exon4 c.G334T p.G112X ACTGATGGAAGAG . 841.0 110.0 858.0 0.0 . 488 . . Atlas-SNP SLC9C1 285335 hgsc.bcm.edu hg19 3 111996688 111996688 + Missense_Mutation SNP G G A novel TCGA-G3-A25V-01A-11D-A16V-10 TCGA-G3-A25V-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4624fd20-e2ad-4826-b606-a694b04e1076 eac002f0-7695-4df1-8ff0-2c5c976279df . . NM_183061 exon5 c.C338T p.P113L AAGCCGGGAATTG . 227.0 28.0 126.0 0.0 . . . . Atlas-SNP GCNT2 2651 hgsc.bcm.edu hg19 6 10586875 10586875 + Missense_Mutation SNP G G T novel TCGA-G3-A25V-01A-11D-A16V-10 TCGA-G3-A25V-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4624fd20-e2ad-4826-b606-a694b04e1076 eac002f0-7695-4df1-8ff0-2c5c976279df . GCNT2 NM_145655 exon1 c.G653T p.G218V CCCCAGGGGTGCT . 88.0 16.0 91.0 0.0 . 123 . . Atlas-SNP EEF1A1 1915 hgsc.bcm.edu hg19 6 74227628 74227628 + Missense_Mutation SNP T T A novel TCGA-G3-A25V-01A-11D-A16V-10 TCGA-G3-A25V-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4624fd20-e2ad-4826-b606-a694b04e1076 eac002f0-7695-4df1-8ff0-2c5c976279df . EEF1A1 NM_001402 exon8 c.A1294T p.T432S CAACTGTCTGTCT . 113.0 18.0 84.0 0.0 . 56 . . Atlas-SNP NUP205 23165 hgsc.bcm.edu hg19 7 135330244 135330244 + Silent SNP T T G novel TCGA-G3-A25V-01A-11D-A16V-10 TCGA-G3-A25V-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4624fd20-e2ad-4826-b606-a694b04e1076 eac002f0-7695-4df1-8ff0-2c5c976279df . NUP205 NM_015135 exon41 c.T5712G p.L1904L TATTCTTTGGCGC . 184.0 23.0 125.0 0.0 . 198 . . Atlas-SNP DPP6 1804 hgsc.bcm.edu hg19 7 154645528 154645528 + Missense_Mutation SNP G G T novel TCGA-G3-A25V-01A-11D-A16V-10 TCGA-G3-A25V-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4624fd20-e2ad-4826-b606-a694b04e1076 eac002f0-7695-4df1-8ff0-2c5c976279df . DPP6 NM_130797 exon17 c.G1705T p.D569Y ACAACAGATAAGA . 154.0 41.0 145.0 0.0 . 383 . . Atlas-SNP PTPDC1 138639 hgsc.bcm.edu hg19 9 96870207 96870207 + Missense_Mutation SNP G G A novel TCGA-G3-A25V-01A-11D-A16V-10 TCGA-G3-A25V-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4624fd20-e2ad-4826-b606-a694b04e1076 eac002f0-7695-4df1-8ff0-2c5c976279df . PTPDC1 NM_001253829 exon9 c.G2408A p.G803D AAGATGGCCCTAA . 131.0 11.0 78.0 0.0 . 134 . . Atlas-SNP C9orf152 401546 hgsc.bcm.edu hg19 9 112963511 112963511 + Missense_Mutation SNP C C T novel TCGA-G3-A25V-01A-11D-A16V-10 TCGA-G3-A25V-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4624fd20-e2ad-4826-b606-a694b04e1076 eac002f0-7695-4df1-8ff0-2c5c976279df . C9orf152 NM_001012993 exon2 c.G437A p.G146E TCAGATCCCACAA . 106.0 18.0 141.0 0.0 . 20 . . Atlas-SNP OR4A5 81318 hgsc.bcm.edu hg19 11 51411592 51411592 + Missense_Mutation SNP C C A novel TCGA-G3-A25V-01A-11D-A16V-10 TCGA-G3-A25V-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4624fd20-e2ad-4826-b606-a694b04e1076 eac002f0-7695-4df1-8ff0-2c5c976279df . OR4A5 NM_001005272 exon1 c.G804T p.M268I CACAGTCATGAAC . 87.0 16.0 71.0 0.0 . 116 . . Atlas-SNP GRIA4 2893 hgsc.bcm.edu hg19 11 105623945 105623945 + Missense_Mutation SNP G G T novel TCGA-G3-A25V-01A-11D-A16V-10 TCGA-G3-A25V-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4624fd20-e2ad-4826-b606-a694b04e1076 eac002f0-7695-4df1-8ff0-2c5c976279df . GRIA4 NM_001077244 exon4 c.G486T p.R162S AGACAGGGGTAAG . 59.0 10.0 58.0 0.0 . 380 . . Atlas-SNP STYK1 55359 hgsc.bcm.edu hg19 12 10775259 10775259 + Silent SNP C C A novel TCGA-G3-A25V-01A-11D-A16V-10 TCGA-G3-A25V-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4624fd20-e2ad-4826-b606-a694b04e1076 eac002f0-7695-4df1-8ff0-2c5c976279df . STYK1 NM_018423 exon9 c.G945T p.L315L ATAGAGCAGGATC . 132.0 15.0 89.0 0.0 . 55 . . Atlas-SNP CAPS2 84698 hgsc.bcm.edu hg19 12 75692559 75692559 + Missense_Mutation SNP T T C rs372993486 TCGA-G3-A25V-01A-11D-A16V-10 TCGA-G3-A25V-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4624fd20-e2ad-4826-b606-a694b04e1076 eac002f0-7695-4df1-8ff0-2c5c976279df . CAPS2 NM_032606 exon12 c.A1009G p.T337A CATTTGTTCTAGA . 95.0 12.0 76.0 0.0 . 96 . . Atlas-SNP OR4L1 122742 hgsc.bcm.edu hg19 14 20528668 20528668 + Silent SNP C C T novel TCGA-G3-A25V-01A-11D-A16V-10 TCGA-G3-A25V-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4624fd20-e2ad-4826-b606-a694b04e1076 eac002f0-7695-4df1-8ff0-2c5c976279df . OR4L1 NM_001004717 exon1 c.C465T p.H155H TTTACACTCCATA . 103.0 14.0 53.0 0.0 . 98 . . Atlas-SNP TM4SF5 9032 hgsc.bcm.edu hg19 17 4686278 4686278 + Silent SNP C C T novel TCGA-G3-A25V-01A-11D-A16V-10 TCGA-G3-A25V-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4624fd20-e2ad-4826-b606-a694b04e1076 eac002f0-7695-4df1-8ff0-2c5c976279df . TM4SF5 NM_003963 exon4 c.C525T p.I175I TGGGATCCAGCTG . 73.0 20.0 106.0 0.0 . 26 . . Atlas-SNP DSC2 1824 hgsc.bcm.edu hg19 18 28648117 28648117 + Missense_Mutation SNP T T C novel TCGA-G3-A25V-01A-11D-A16V-10 TCGA-G3-A25V-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4624fd20-e2ad-4826-b606-a694b04e1076 eac002f0-7695-4df1-8ff0-2c5c976279df . DSC2 NM_024422 exon16 c.A2570G p.Y857C TAGTTATATGTCA . 133.0 30.0 93.0 0.0 . 168 . . Atlas-SNP KDM5D 8284 hgsc.bcm.edu hg19 Y 21897301 21897301 + Silent SNP C C T novel TCGA-G3-A25V-01A-11D-A16V-10 TCGA-G3-A25V-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4624fd20-e2ad-4826-b606-a694b04e1076 eac002f0-7695-4df1-8ff0-2c5c976279df . KDM5D NM_001146705 exon8 c.G870A p.L290L TAGGCTCAAGTGC . 74.0 21.0 39.0 0.0 . 40 . . Atlas-SNP CSNK1A1L 122011 hgsc.bcm.edu hg19 13 37678905 37678906 + Frame_Shift_Ins INS - - T novel TCGA-G3-A25V-01A-11D-A16V-10 TCGA-G3-A25V-10A-01D-A16V-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4624fd20-e2ad-4826-b606-a694b04e1076 eac002f0-7695-4df1-8ff0-2c5c976279df . CSNK1A1L NM_145203 exon1 c.489_490insA p.K163fs . . 286.0 43.0 323.0 0.0 . 69 . . Atlas-INDEL KBTBD12 166348 hgsc.bcm.edu hg19 3 127642837 127642838 + In_Frame_Ins INS - - TCA novel TCGA-G3-A25V-01A-11D-A16V-10 TCGA-G3-A25V-10A-01D-A16V-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4624fd20-e2ad-4826-b606-a694b04e1076 eac002f0-7695-4df1-8ff0-2c5c976279df . KBTBD12 NM_207335 exon1 c.933_934insTCA p.I311delinsIS . . 176.0 24.0 127.0 0.0 . 41 . . Atlas-INDEL TP53 7157 hgsc.bcm.edu hg19 17 7577531 7577531 + Frame_Shift_Del DEL G G - novel TCGA-G3-A25V-01A-11D-A16V-10 TCGA-G3-A25V-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4624fd20-e2ad-4826-b606-a694b04e1076 eac002f0-7695-4df1-8ff0-2c5c976279df TP53_ENST00000455263,NS,malignant_melanoma,+1,4 TP53 NM_000546 exon7 c.751delA p.I251fs . . 352.0 91.0 106.0 0.0 . 33396 . . Atlas-Indel,Pindel PMS1 5378 hgsc.bcm.edu hg19 2 190719433 190719433 + Frame_Shift_Del DEL G G - novel TCGA-G3-A25V-01A-11D-A16V-10 TCGA-G3-A25V-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4624fd20-e2ad-4826-b606-a694b04e1076 eac002f0-7695-4df1-8ff0-2c5c976279df . PMS1 NM_001128144 exon9 c.1434delT p.S478fs . . 130.0 14.0 87.0 0.0 . 78 . . Atlas-Indel,Pindel MAP2K4 6416 hgsc.bcm.edu hg19 17 11998923 11998923 + Frame_Shift_Del DEL A A - novel TCGA-G3-A25V-01A-11D-A16V-10 TCGA-G3-A25V-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4624fd20-e2ad-4826-b606-a694b04e1076 eac002f0-7695-4df1-8ff0-2c5c976279df . MAP2K4 NM_003010 exon4 c.424delC p.Q142fs . . 82.0 13.0 78.0 0.0 . 176 . . Atlas-INDEL GPR116 221395 hgsc.bcm.edu hg19 6 46847716 46847716 + Frame_Shift_Del DEL A A - novel TCGA-G3-A25V-01A-11D-A16V-10 TCGA-G3-A25V-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4624fd20-e2ad-4826-b606-a694b04e1076 eac002f0-7695-4df1-8ff0-2c5c976279df . GPR116 NM_015234 exon9 c.876delG p.V292fs . . 90.0 15.0 81.0 0.0 . 133 . . Atlas-INDEL CHD9 80205 hgsc.bcm.edu hg19 16 53340280 53340280 + Frame_Shift_Del DEL T T - novel TCGA-G3-A25V-01A-11D-A16V-10 TCGA-G3-A25V-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4624fd20-e2ad-4826-b606-a694b04e1076 eac002f0-7695-4df1-8ff0-2c5c976279df . CHD9 NM_025134 exon32 c.6750delA p.G2250fs . . 97.0 15.0 89.0 0.0 . 203 . . Atlas-Indel,Pindel