Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
PLA2R1	22925	hgsc.bcm.edu	hg19	2	160804063	160804063	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PLA2R1	NM_001195641	exon26	c.A3717G	p.R1239R	AGATTGTCTTGTT	.	118.0	21.0	77.0	0.0	.	153	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179430304	179430304	+	Missense_Mutation	SNP	C	C	T	rs202149931	bycluster	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TTN	NM_001267550	exon326	c.G80555A	p.R26852H	TTGACACGGAACT	.	97.0	26.0	70.0	0.0	.	18412	.	C|0.999;T|0.001	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179610836	179610836	+	Missense_Mutation	SNP	C	C	T	rs141483365		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TTN	NM_133379	exon46	c.G16291A	p.E5431K	TCTCCTCGCTAAT	.	101.0	23.0	91.0	0.0	.	18412	.	C|1.000;T|0.000	Atlas-SNP
PAX3	5077	hgsc.bcm.edu	hg19	2	223066132	223066132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	PAX3,NS,carcinoma,0,1	PAX3	NM_181459	exon9	c.G1450A	p.A484T	CTTACGCGATATC	.	61.0	22.0	58.0	0.0	.	106	.	.	Atlas-SNP
BAP1	8314	hgsc.bcm.edu	hg19	3	52439874	52439874	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	BAP1,NS,carcinoma,0,1	BAP1	NM_004656	exon10	c.C838T	p.Q280X	GCAGCTGTGACTC	.	28.0	19.0	39.0	0.0	.	371	.	.	Atlas-SNP
CD96	10225	hgsc.bcm.edu	hg19	3	111319663	111319663	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CD96	NM_198196	exon8	c.C1037G	p.A346G	AACCAGCCCAATC	.	64.0	35.0	79.0	0.0	.	75	.	.	Atlas-SNP
KIAA1109	84162	hgsc.bcm.edu	hg19	4	123238013	123238013	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIAA1109	NM_015312	exon60	c.C10666T	p.L3556L	GATGATCTGAAGT	.	77.0	16.0	129.0	0.0	.	424	.	.	Atlas-SNP
KIAA0146	23514	hgsc.bcm.edu	hg19	8	48614552	48614552	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIAA0146	NM_001080394	exon14	c.C1952G	p.A651G	TCTATGCCACGGT	.	126.0	59.0	121.0	0.0	.	64	.	.	Atlas-SNP
SLC30A8	169026	hgsc.bcm.edu	hg19	8	118170071	118170071	+	Missense_Mutation	SNP	C	C	T	rs141202988	bycluster	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	SLC30A8,caecum,carcinoma,-1,4	SLC30A8	NM_173851	exon4	c.C560T	p.A187V	CAGTGGCGGCCAA	.	101.0	65.0	88.0	0.0	.	102	.	C|1.000;T|0.000	Atlas-SNP
CST6	1474	hgsc.bcm.edu	hg19	11	65780325	65780325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	CST6,rectum,carcinoma,0,1	CST6	NM_001323	exon2	c.C269A	p.T90K	TCCTGACGATGGA	.	35.0	25.0	53.0	0.0	.	14	.	.	Atlas-SNP
TAS2R30	259293	hgsc.bcm.edu	hg19	12	11286203	11286203	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TAS2R30	NM_001097643	exon1	c.A641T	p.K214I	GATCCTTTGCCAT	.	205.0	22.0	131.0	0.0	.	28	.	.	Atlas-SNP
PCID2	55795	hgsc.bcm.edu	hg19	13	113835485	113835485	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PCID2	NM_001258212	exon10	c.A907G	p.R303G	TCATCCTTTTGTT	.	31.0	11.0	54.0	0.0	.	30	.	.	Atlas-SNP
UNC13C	440279	hgsc.bcm.edu	hg19	15	54306377	54306377	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	UNC13C	NM_001080534	exon1	c.C1277T	p.T426I	CCCAGACATATGA	.	86.0	36.0	65.0	0.0	.	674	.	.	Atlas-SNP
IDH2	3418	hgsc.bcm.edu	hg19	15	90631837	90631837	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	IDH2,NS,haematopoietic_neoplasm,-1,1	IDH2	NM_002168	exon4	c.G516C	p.R172S	GGCGTGCCTGCCA	.	96.0	41.0	132.0	0.0	.	1372	.	.	Atlas-SNP
SMG6	23293	hgsc.bcm.edu	hg19	17	2203159	2203159	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SMG6	NM_017575	exon2	c.G888T	p.V296V	CACAGACACTTGC	.	65.0	19.0	56.0	0.0	.	97	.	.	Atlas-SNP
ZZEF1	23140	hgsc.bcm.edu	hg19	17	3957431	3957431	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZZEF1	NM_015113	exon34	c.G5354T	p.G1785V	TCACACCCATCAC	.	50.0	16.0	42.0	0.0	.	195	.	.	Atlas-SNP
MYO18A	399687	hgsc.bcm.edu	hg19	17	27421740	27421740	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MYO18A	NM_078471	exon30	c.C4638T	p.D1546D	CTCCAGGTCCCGG	.	108.0	33.0	145.0	0.0	.	217	.	.	Atlas-SNP
AFG3L2	10939	hgsc.bcm.edu	hg19	18	12329714	12329714	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AFG3L2	NM_006796	exon17	c.A2244G	p.R748R	AAATGGTCTGGGG	.	84.0	36.0	91.0	0.0	.	60	.	.	Atlas-SNP
ZNF532	55205	hgsc.bcm.edu	hg19	18	56585829	56585829	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF532	NM_018181	exon4	c.A310G	p.K104E	TACAGTAAAGATG	.	73.0	14.0	56.0	0.0	.	108	.	.	Atlas-SNP
PRKD2	25865	hgsc.bcm.edu	hg19	19	47207834	47207834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PRKD2	NM_016457	exon4	c.G584A	p.R195H	GACAGGCGCCGTT	.	47.0	13.0	31.0	0.0	.	94	.	.	Atlas-SNP
XRN2	22803	hgsc.bcm.edu	hg19	20	21346075	21346075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	XRN2	NM_012255	exon25	c.C2272T	p.P758S	AAAGACCCACAGT	.	93.0	40.0	107.0	0.0	.	90	.	.	Atlas-SNP
FAM47A	158724	hgsc.bcm.edu	hg19	X	34149594	34149594	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FAM47A	NM_203408	exon1	c.G802T	p.D268Y	CAGAATCCAGTTT	.	102.0	56.0	66.0	0.0	.	249	.	.	Atlas-SNP
CYTB	0	hgsc.bcm.edu	hg19	MT	15461	15461	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	ENST00000361789	exon1	c.T715C	p.L239L	CTCTCCTTAATGA	.	273.0	23.0	186.0	0.0	.	.	.	.	Atlas-SNP
TMCC1	23023	hgsc.bcm.edu	hg19	3	129389772	129389772	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TMCC1	NM_001017395	exon4	c.913delA	p.K305fs	.	.	139.0	11.0	154.0	0.0	.	105	.	.	Atlas-INDEL
TMCC1	23023	hgsc.bcm.edu	hg19	3	129389775	129389787	+	Frame_Shift_Del	DEL	GTGGTAGTGCTCA	GTGGTAGTGCTCA	-	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	GTGGTAGTGCTCA	GTGGTAGTGCTCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TMCC1	NM_001017395	exon4	c.898_910del	p.300_304del	.	.	137.0	11.0	152.0	0.0	.	105	.	.	Atlas-INDEL
AFG3L2	10939	hgsc.bcm.edu	hg19	18	12329717	12329717	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AFG3L2	NM_006796	exon17	c.2242delA	p.R748fs	.	.	85.0	31.0	90.0	0.0	.	60	.	.	Atlas-INDEL
AFG3L2	10939	hgsc.bcm.edu	hg19	18	12329718	12329718	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AFG3L2	NM_006796	exon17	c.2241delC	p.P747fs	.	.	87.0	25.0	90.0	0.0	.	60	.	.	Pindel
TMCC1	23023	hgsc.bcm.edu	hg19	3	129389773	129389787	+	In_Frame_Del	DEL	CTGTGGTAGTGCTCA	CTGTGGTAGTGCTCA	-	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	CTGTGGTAGTGCTCA	CTGTGGTAGTGCTCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TMCC1	NM_001017395	exon4	c.898_912del	p.300_304del	.	.	144.0	15.0	161.0	0.0	.	105	.	.	Pindel