Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
TNFRSF18	8784	hgsc.bcm.edu	hg19	1	1139782	1139782	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	TNFRSF18	NM_148902	exon3	c.C395A	p.T132K	CACTCTGTCCAAG	.	84.0	21.0	118.0	0.0	.	13	.	.	Atlas-SNP
VWA1	64856	hgsc.bcm.edu	hg19	1	1372313	1372313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	VWA1	NM_022834	exon2	c.C80T	p.P27L	GTCCACCAGCATC	.	127.0	35.0	185.0	0.0	.	15	.	.	Atlas-SNP
USP48	84196	hgsc.bcm.edu	hg19	1	22084166	22084166	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	USP48	NM_001032730	exon2	c.G245T	p.R82M	TTTCTCCTCTCAC	.	79.0	24.0	86.0	0.0	.	91	.	.	Atlas-SNP
TCTEX1D1	200132	hgsc.bcm.edu	hg19	1	67242056	67242056	+	Silent	SNP	C	C	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	TCTEX1D1	NM_152665	exon4	c.C306T	p.L102L	AGAGCTCTGTAGA	.	144.0	51.0	180.0	0.0	.	27	.	.	Atlas-SNP
SH2D2A	9047	hgsc.bcm.edu	hg19	1	156785887	156785887	+	Splice_Site	SNP	C	C	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	SH2D2A	NM_003975	exon3	c.35-1G>A	.	GACTCCCTGTGAG	.	126.0	42.0	152.0	0.0	.	78	.	.	Atlas-SNP
ATP1A4	480	hgsc.bcm.edu	hg19	1	160136811	160136811	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	ATP1A4	NM_144699	exon9	c.G1300T	p.G434C	ATCGCTGGCCTCT	.	79.0	4.0	65.0	0.0	.	167	.	.	Atlas-SNP
NFASC	23114	hgsc.bcm.edu	hg19	1	204937427	204937427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	NFASC_ENST00000403080,caecum,carcinoma,0,3	NFASC	NM_015090	exon9	c.G790A	p.A264T	GGCACCGCGAGCA	.	104.0	30.0	132.0	0.0	.	396	.	.	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	hg19	1	216062335	216062335	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.,1	USH2A	NM_206933	exon41	c.C7656T	p.T2552T	CTGCCAGGTGACC	.	41.0	14.0	45.0	0.0	.	1168	.	.	Atlas-SNP
SLC30A10	55532	hgsc.bcm.edu	hg19	1	220088994	220088994	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	SLC30A10	NM_018713	exon4	c.G1255T	p.A419S	GCAGTGCCCCGGG	.	201.0	56.0	224.0	0.0	.	58	.	.	Atlas-SNP
RAD51AP2	729475	hgsc.bcm.edu	hg19	2	17696823	17696823	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	RAD51AP2	NM_001099218	exon1	c.G2860T	p.E954X	GAGCTTCTGTTGA	.	123.0	44.0	160.0	0.0	.	134	.	.	Atlas-SNP
PUM2	23369	hgsc.bcm.edu	hg19	2	20490545	20490545	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	PUM2	NM_015317	exon9	c.C1159G	p.R387G	CAGCACGGAGAAC	.	103.0	36.0	137.0	0.0	.	91	.	.	Atlas-SNP
QPCT	25797	hgsc.bcm.edu	hg19	2	37580079	37580079	+	Splice_Site	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	QPCT	NM_012413	exon2	c.267+1G>T	.	CGTCAGGTGAGAA	.	42.0	20.0	34.0	0.0	.	34	.	.	Atlas-SNP
SPTBN1	6711	hgsc.bcm.edu	hg19	2	54858501	54858501	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	SPTBN1	NM_003128	exon16	c.A3317G	p.N1106S	ACGAGAACATCAA	.	201.0	61.0	201.0	0.0	.	378	.	.	Atlas-SNP
KIAA1841	84542	hgsc.bcm.edu	hg19	2	61324923	61324923	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	KIAA1841	NM_032506	exon12	c.G1301T	p.G434V	CTGTTGGCACTGG	.	165.0	43.0	204.0	0.0	.	95	.	.	Atlas-SNP
NFU1	27247	hgsc.bcm.edu	hg19	2	69642381	69642381	+	Silent	SNP	T	T	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	NFU1	NM_001002755	exon5	c.A420T	p.T140T	CATGATTGTTGCA	.	217.0	53.0	245.0	0.0	.	19	.	.	Atlas-SNP
KDM3A	55818	hgsc.bcm.edu	hg19	2	86709144	86709144	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	KDM3A	NM_001146688	exon17	c.G2604A	p.T868T	CCATACGTTTAAC	.	177.0	54.0	169.0	0.0	.	179	.	.	Atlas-SNP
GAD1	2571	hgsc.bcm.edu	hg19	2	171700595	171700595	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	GAD1	NM_000817	exon7	c.C679A	p.Q227K	ATGGAACAAATAA	.	182.0	42.0	213.0	0.0	.	79	.	.	Atlas-SNP
IKZF2	22807	hgsc.bcm.edu	hg19	2	213914450	213914450	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	IKZF2	NM_016260	exon5	c.C561T	p.L187L	GGTCCTGAGGTGT	.	81.0	30.0	80.0	0.0	.	71	.	.	Atlas-SNP
SPAG16	79582	hgsc.bcm.edu	hg19	2	214354720	214354720	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	SPAG16	NM_024532	exon10	c.C976T	p.P326S	CCAAATCCAAACC	.	106.0	36.0	97.0	0.0	.	134	.	.	Atlas-SNP
SPEG	10290	hgsc.bcm.edu	hg19	2	220348819	220348819	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	SPEG	NM_005876	exon30	c.C6634T	p.Q2212X	CCTGCCCAAGACA	.	64.0	24.0	158.0	0.0	.	272	.	.	Atlas-SNP
ARMC9	80210	hgsc.bcm.edu	hg19	2	232209780	232209780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	ARMC9	NM_025139	exon21	c.G1972A	p.G658S	CCCGGCGGCCACA	.	92.0	6.0	77.0	0.0	.	129	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266101	41266101	+	Missense_Mutation	SNP	C	C	G	rs121913400	bycluster	TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	CTNNB1,gallbladder,other,0,359	CTNNB1	NM_001098209	exon3	c.C98G	p.S33C	TGGACTCTGGAAT	.	287.0	76.0	306.0	0.0	.	4904	.	.	Atlas-SNP
MYH15	22989	hgsc.bcm.edu	hg19	3	108204062	108204062	+	Silent	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	MYH15	NM_014981	exon12	c.C1050A	p.I350I	GCCCAAGATGTCC	.	121.0	66.0	125.0	0.0	.	223	.	.	Atlas-SNP
KLHL6	89857	hgsc.bcm.edu	hg19	3	183209982	183209982	+	Silent	SNP	C	C	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	KLHL6	NM_130446	exon7	c.G1599C	p.P533P	TTCCAGCGGGCTG	.	46.0	38.0	106.0	0.0	.	100	.	.	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	hg19	4	79166410	79166410	+	Silent	SNP	C	C	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	FRAS1	NM_001166133	exon4	c.C240T	p.A80A	AGCTGCCAACCAA	.	140.0	47.0	145.0	0.0	.	779	.	.	Atlas-SNP
FBXW7	55294	hgsc.bcm.edu	hg19	4	153253841	153253841	+	Missense_Mutation	SNP	G	G	T	rs112892452	alternate_allele	TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	FBXW7_NM_018315_2,colon,carcinoma,+2,2	FBXW7	NM_033632	exon6	c.C892A	p.P298T	CTTTGGGTTCCAG	.	124.0	36.0	109.0	0.0	.	2157	.	G|0.500;A|0.500	Atlas-SNP
HAPLN1	1404	hgsc.bcm.edu	hg19	5	82937472	82937472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	HAPLN1	NM_001884	exon5	c.G908T	p.R303L	TCACAGCGGTCAT	.	269.0	66.0	216.0	0.0	.	79	.	.	Atlas-SNP
PCDHB1	29930	hgsc.bcm.edu	hg19	5	140433269	140433269	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	PCDHB1	NM_013340	exon1	c.C2214A	p.N738K	CTCTAACAACCTG	.	135.0	36.0	129.0	0.0	.	148	.	.	Atlas-SNP
NUP153	9972	hgsc.bcm.edu	hg19	6	17637675	17637675	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	NUP153	NM_005124	exon16	c.A2173G	p.T725A	CCCAAGTGCCTAT	.	338.0	207.0	280.0	0.0	.	116	.	.	Atlas-SNP
ZNF318	24149	hgsc.bcm.edu	hg19	6	43322734	43322734	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	ZNF318	NM_014345	exon4	c.G2338T	p.G780X	CAGGTCCCTGGTA	.	529.0	113.0	335.0	0.0	.	175	.	.	Atlas-SNP
SLC22A16	85413	hgsc.bcm.edu	hg19	6	110752455	110752455	+	Missense_Mutation	SNP	G	G	T	rs145203259	bycluster;byfrequency;alternate_allele	TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	SLC22A16	NM_033125	exon7	c.C1440A	p.S480R	GCTGCCGCTTCCC	.	28.0	14.0	43.0	0.0	.	81	.	G|0.998;C|0.002	Atlas-SNP
WDR27	253769	hgsc.bcm.edu	hg19	6	170065609	170065609	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	WDR27	NM_182552	exon7	c.G756T	p.Q252H	GACCAGCTGCCTG	.	150.0	30.0	93.0	0.0	.	129	.	.	Atlas-SNP
C6orf70	55780	hgsc.bcm.edu	hg19	6	170159125	170159125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	C6orf70	NM_018341	exon6	c.G569T	p.W190L	TCTTATGGCATGG	.	287.0	77.0	261.0	0.0	.	63	.	.	Atlas-SNP
ASNS	440	hgsc.bcm.edu	hg19	7	97482459	97482459	+	Silent	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	ASNS	NM_133436	exon12	c.C1389A	p.L463L	TCGCCAGAGAATC	.	78.0	4.0	108.0	0.0	.	97	.	.	Atlas-SNP
TERF1	7013	hgsc.bcm.edu	hg19	8	73921159	73921159	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	TERF1	NM_017489	exon1	c.G38C	p.R13P	GCCCGCGGGGCTG	.	318.0	48.0	241.0	0.0	.	48	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113651094	113651094	+	Missense_Mutation	SNP	G	G	C	rs145905619	alternate_allele	TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	CSMD3_ENST00000343508,NS,carcinoma,-2,2	CSMD3	NM_198123	exon21	c.C3357G	p.D1119E	TAAGTAGTCATGA	.	159.0	98.0	108.0	1.0	.	2325	.	G|1.000;A|0.000	Atlas-SNP
TRPS1	7227	hgsc.bcm.edu	hg19	8	116427073	116427073	+	Silent	SNP	A	A	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	TRPS1	NM_014112	exon7	c.T3063C	p.G1021G	CAATGAACCCTGG	.	302.0	45.0	170.0	0.0	.	516	.	.	Atlas-SNP
JAK2	3717	hgsc.bcm.edu	hg19	9	5072525	5072525	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	JAK2	NM_004972	exon13	c.A1675C	p.I559L	ACAAAGATTTTTA	.	78.0	22.0	91.0	0.0	.	35466	.	.	Atlas-SNP
OGN	4969	hgsc.bcm.edu	hg19	9	95155381	95155381	+	Silent	SNP	A	A	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	OGN	NM_033014	exon4	c.T414C	p.D138D	TGCAAAATCTTTG	.	189.0	71.0	174.0	0.0	.	26	.	.	Atlas-SNP
EPB41L4B	54566	hgsc.bcm.edu	hg19	9	112004035	112004035	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	EPB41L4B	NM_018424	exon16	c.C1464T	p.D488D	ATGGCTGTCATCT	.	231.0	78.0	225.0	0.0	.	111	.	.	Atlas-SNP
PALM2-AKAP2	445815	hgsc.bcm.edu	hg19	9	112694224	112694224	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	PALM2-AKAP2	NM_007203	exon6	c.T412A	p.S138T	TACATTTCCTCCC	.	84.0	33.0	102.0	0.0	.	117	.	.	Atlas-SNP
NET1	10276	hgsc.bcm.edu	hg19	10	5488742	5488742	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	NET1	NM_005863	exon1	c.A14T	p.D5V	CACATGATGAGAC	.	77.0	10.0	71.0	0.0	.	82	.	.	Atlas-SNP
GPAM	57678	hgsc.bcm.edu	hg19	10	113935464	113935464	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	GPAM	NM_001244949	exon6	c.G307T	p.G103X	GCCATCCGCGGTG	.	79.0	29.0	64.0	0.0	.	68	.	.	Atlas-SNP
DPYSL4	10570	hgsc.bcm.edu	hg19	10	134012417	134012417	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	DPYSL4,NS,carcinoma,0,1	DPYSL4	NM_006426	exon8	c.C753A	p.Y251X	GCTGTACGTCACC	.	189.0	84.0	247.0	1.0	.	91	.	.	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	hg19	11	1278847	1278847	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	MUC5B,caecum,carcinoma,0,2	MUC5B	NM_002458	exon41	c.G16357T	p.A5453S	TGTGACGCCCAGG	.	36.0	2.0	88.0	0.0	.	473	.	.	Atlas-SNP
STK33	65975	hgsc.bcm.edu	hg19	11	8474374	8474374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	STK33	NM_030906	exon9	c.A866G	p.Y289C	CCCATATAGATAG	.	88.0	5.0	53.0	0.0	.	147	.	.	Atlas-SNP
OR4A47	403253	hgsc.bcm.edu	hg19	11	48510880	48510880	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	OR4A47	NM_001005512	exon1	c.T536A	p.M179K	GTGACATGTATCC	.	331.0	77.0	268.0	0.0	.	72	.	.	Atlas-SNP
PC	5091	hgsc.bcm.edu	hg19	11	66616778	66616778	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	PC	NM_000920	exon21	c.G3211T	p.A1071S	GGCCGGCCCGGTT	.	136.0	94.0	155.0	0.0	.	116	.	.	Atlas-SNP
TENM4	26011	hgsc.bcm.edu	hg19	11	78380651	78380651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	.	NM_001098816	exon32	c.C6739T	p.R2247W	CCAGCCGAGTGAT	.	256.0	87.0	308.0	1.0	.	.	.	.	Atlas-SNP
GRM5	2915	hgsc.bcm.edu	hg19	11	88330465	88330465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	GRM5	NM_000842	exon6	c.G1450A	p.V484I	TTCCAACGTTGAT	.	148.0	50.0	145.0	0.0	.	414	.	.	Atlas-SNP
CADM1	23705	hgsc.bcm.edu	hg19	11	115085403	115085403	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	CADM1	NM_014333	exon7	c.G919T	p.D307Y	CATTATCTGTTTT	.	477.0	131.0	546.0	0.0	.	74	.	.	Atlas-SNP
LRRIQ1	84125	hgsc.bcm.edu	hg19	12	85441061	85441061	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	LRRIQ1	NM_001079910	exon6	c.A491G	p.E164G	AAGTGGAAGAAAA	.	115.0	23.0	117.0	0.0	.	512	.	.	Atlas-SNP
UNG	7374	hgsc.bcm.edu	hg19	12	109540650	109540650	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	UNG	NM_080911	exon5	c.G540T	p.E180D	TTTGGAGAACATT	.	40.0	4.0	41.0	0.0	.	30	.	.	Atlas-SNP
RFC5	5985	hgsc.bcm.edu	hg19	12	118456923	118456923	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	RFC5	NM_007370	exon2	c.C112G	p.Q38E	TCTCATCAGGACA	.	88.0	24.0	53.0	0.0	.	35	.	.	Atlas-SNP
ATP12A	479	hgsc.bcm.edu	hg19	13	25265114	25265114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	ATP12A	NM_001185085	exon8	c.C812T	p.P271L	CTTCCCCTGTAGG	.	200.0	60.0	241.0	0.0	.	172	.	.	Atlas-SNP
MAB21L1	4081	hgsc.bcm.edu	hg19	13	36049768	36049768	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	MAB21L1	NM_005584	exon1	c.A508T	p.I170F	GCGTGATCTGCAC	.	174.0	42.0	231.0	0.0	.	52	.	.	Atlas-SNP
ELF1	1997	hgsc.bcm.edu	hg19	13	41525513	41525513	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	ELF1	NM_001145353	exon3	c.C313A	p.L105I	TGAGGAGTGCCTC	.	66.0	4.0	85.0	0.0	.	65	.	.	Atlas-SNP
AKAP11	11215	hgsc.bcm.edu	hg19	13	42872928	42872928	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	AKAP11	NM_016248	exon7	c.A611G	p.N204S	CATACAATGATGG	.	56.0	22.0	87.0	0.0	.	146	.	.	Atlas-SNP
SIPA1L1	26037	hgsc.bcm.edu	hg19	14	72190403	72190403	+	Silent	SNP	C	C	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	SIPA1L1	NM_015556	exon16	c.C4311T	p.F1437F	GGTTTTCACCAGT	.	97.0	32.0	149.0	0.0	.	219	.	.	Atlas-SNP
SERPINA9	327657	hgsc.bcm.edu	hg19	14	94936087	94936087	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	SERPINA9	NM_175739	exon2	c.C145A	p.P49T	GGCGGGGGTATGC	.	109.0	37.0	119.0	0.0	.	105	.	.	Atlas-SNP
KLC1	3831	hgsc.bcm.edu	hg19	14	104153537	104153537	+	Silent	SNP	A	A	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	KLC1	NM_001130107	exon14	c.A1770G	p.P590P	TGAGCCAAAGAAC	.	76.0	18.0	111.0	0.0	.	54	.	.	Atlas-SNP
B2M	567	hgsc.bcm.edu	hg19	15	45007635	45007635	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	B2M	NM_004048	exon2	c.C82T	p.Q28X	AAGATTCAGGTTT	.	103.0	55.0	69.0	0.0	.	99	.	.	Atlas-SNP
RAB27A	5873	hgsc.bcm.edu	hg19	15	55527010	55527010	+	Silent	SNP	T	T	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	RAB27A	NM_183235	exon3	c.A123T	p.T41T	GCCCACTGTTGTG	.	109.0	16.0	92.0	0.0	.	18	.	.	Atlas-SNP
AXIN1	8312	hgsc.bcm.edu	hg19	16	396951	396951	+	Silent	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	AXIN1	NM_181050	exon2	c.G75T	p.V25V	ACCAGGCACTGGG	.	91.0	33.0	84.0	0.0	.	290	.	.	Atlas-SNP
BCAR1	9564	hgsc.bcm.edu	hg19	16	75263466	75263466	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	BCAR1	NM_001170714	exon8	c.G2694T	p.E898D	GCCCAGCTCCTTG	.	12.0	5.0	45.0	0.0	.	184	.	.	Atlas-SNP
KLHDC4	54758	hgsc.bcm.edu	hg19	16	87788861	87788861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	KLHDC4	NM_001184856	exon4	c.G308A	p.R103K	TCCTTTCTGGTAT	.	237.0	67.0	238.0	0.0	.	45	.	.	Atlas-SNP
MNT	4335	hgsc.bcm.edu	hg19	17	2290884	2290884	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	MNT	NM_020310	exon6	c.A1060G	p.K354E	TCAGCTTAGGTGG	.	71.0	4.0	107.0	0.0	.	35	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7577141	7577141	+	Missense_Mutation	SNP	C	C	A	rs193920774	alternate_allele	TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	TP53_ENST00000455263,NS,carcinoma,0,1	TP53	NM_000546	exon8	c.G797T	p.G266V	TTCCGTCCCAGTA	.	76.0	39.0	66.0	0.0	.	33396	.	.	Atlas-SNP
SSH2	85464	hgsc.bcm.edu	hg19	17	28022497	28022497	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	SSH2	NM_033389	exon4	c.C256G	p.P86A	CTTCTGGGCGGAG	.	130.0	74.0	142.0	0.0	.	107	.	.	Atlas-SNP
APOH	350	hgsc.bcm.edu	hg19	17	64210647	64210647	+	Silent	SNP	A	A	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	APOH	NM_000042	exon7	c.T906C	p.N302N	TTCCTTATTTTTG	.	187.0	37.0	196.0	0.0	.	45	.	.	Atlas-SNP
KPNA2	3838	hgsc.bcm.edu	hg19	17	66038335	66038335	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	KPNA2	NM_002266	exon5	c.A437G	p.N146S	TCACTAACATTGC	.	137.0	95.0	169.0	1.0	.	55	.	.	Atlas-SNP
EVPL	2125	hgsc.bcm.edu	hg19	17	74006234	74006234	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	EVPL	NM_001988	exon22	c.G3052C	p.E1018Q	TGACCTCCTTGGT	.	120.0	73.0	182.0	0.0	.	155	.	.	Atlas-SNP
CACTIN	58509	hgsc.bcm.edu	hg19	19	3623771	3623771	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	.	NM_021231	exon2	c.G557T	p.G186V	CCCCAGCCCATCT	.	110.0	40.0	177.0	0.0	.	.	.	.	Atlas-SNP
JAK3	3718	hgsc.bcm.edu	hg19	19	17947999	17947999	+	Silent	SNP	C	C	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	JAK3	NM_000215	exon13	c.G1725A	p.L575L	GCTCATCAAGCTC	.	130.0	26.0	94.0	0.0	.	341	.	.	Atlas-SNP
EPS8L1	54869	hgsc.bcm.edu	hg19	19	55598089	55598089	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	EPS8L1	NM_133180	exon18	c.C1785G	p.F595L	GAAATTCTCCCAG	.	49.0	10.0	67.0	0.0	.	122	.	.	Atlas-SNP
PTPRT	11122	hgsc.bcm.edu	hg19	20	41101120	41101120	+	Silent	SNP	G	G	A	rs376152261		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	PTPRT,colon,carcinoma,0,2	PTPRT	NM_007050	exon8	c.C1236T	p.Y412Y	CACCGCGTAGCCG	.	231.0	24.0	138.0	0.0	.	372	.	.	Atlas-SNP
ZNF512B	57473	hgsc.bcm.edu	hg19	20	62591366	62591366	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	ZNF512B	NM_020713	exon17	c.A2554G	p.T852A	CTGGGGTCCGCTC	.	56.0	10.0	52.0	0.0	.	72	.	.	Atlas-SNP
C21orf33	8209	hgsc.bcm.edu	hg19	21	45553649	45553649	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	C21orf33	NM_198155	exon1	c.G70A	p.G24S	TCCCCCGGCGGTC	.	13.0	9.0	54.0	0.0	.	23	.	.	Atlas-SNP
MN1	4330	hgsc.bcm.edu	hg19	22	28193384	28193384	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	MN1	NM_002430	exon1	c.A3148T	p.S1050C	TCGTGCTCACCTC	.	51.0	16.0	93.0	0.0	.	122	.	.	Atlas-SNP
RPL3	6122	hgsc.bcm.edu	hg19	22	39709288	39709288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	RPL3	NM_000967	exon9	c.G1075T	p.A359S	CCAGAGCCCGCCG	.	141.0	34.0	141.0	0.0	.	29	.	.	Atlas-SNP
CELSR1	9620	hgsc.bcm.edu	hg19	22	46792623	46792623	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	CELSR1,NS,carcinoma,0,1	CELSR1	NM_014246	exon13	c.G5722T	p.V1908L	CATCCACACAGTT	.	63.0	27.0	113.0	0.0	.	242	.	.	Atlas-SNP
DIAPH2	1730	hgsc.bcm.edu	hg19	X	96369847	96369847	+	Silent	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	DIAPH2	NM_007309	exon21	c.G2472T	p.L824L	AGAACTGAAGAAA	.	83.0	4.0	100.0	0.0	.	148	.	.	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	12514	12514	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	.	ENST00000361567	exon1	c.G178A	p.E60K	GACCAAGAAGTTA	.	14.0	8.0	6.0	0.0	.	.	.	.	Atlas-SNP
LRRC33	375387	hgsc.bcm.edu	hg19	3	196387720	196387721	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	LRRC33	NM_198565	exon3	c.1206_1207insA	p.G402fs	.	.	39.0	28.0	57.0	0.0	.	91	.	.	Atlas-INDEL
LRRC33	375387	hgsc.bcm.edu	hg19	3	196387716	196387719	+	Frame_Shift_Del	DEL	TGGG	TGGG	-	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	TGGG	TGGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	LRRC33	NM_198565	exon3	c.1201_1204del	p.401_402del	.	.	38.0	27.0	52.0	0.0	.	91	.	.	Atlas-INDEL
EBF3	253738	hgsc.bcm.edu	hg19	10	131676057	131676057	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	EBF3	NM_001005463	exon7	c.612delC	p.N204fs	.	.	78.0	23.0	93.0	0.0	.	193	.	.	Atlas-Indel,Pindel
LRRC33	375387	hgsc.bcm.edu	hg19	3	196387716	196387720	+	Frame_Shift_Del	DEL	TGGGC	TGGGC	-	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	TGGGC	TGGGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	LRRC33	NM_198565	exon3	c.1201_1205del	p.401_402del	.	.	41.0	21.0	55.0	0.0	.	91	.	.	Pindel
CDC27	996	hgsc.bcm.edu	hg19	17	45234594	45234729	+	Frame_Shift_Del	DEL	CTGAAACAGAAAATTTCTACCAAGTCATTCACAATATATTATTTAGTTCAGATCATTCTTTGTAGTTTTCATAATATTTTGAACACTAGAATATAAGACACTTACAATTGTGTCCTGGGGTGTTTCCGTAAGAACT	CTGAAACAGAAAATTTCTACCAAGTCATTCACAATATATTATTTAGTTCAGATCATTCTTTGTAGTTTTCATAATATTTTGAACACTAGAATATAAGACACTTACAATTGTGTCCTGGGGTGTTTCCGTAAGAACT	-	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	CTGAAACAGAAAATTTCTACCAAGTCATTCACAATATATTATTTAGTTCAGATCATTCTTTGTAGTTTTCATAATATTTTGAACACTAGAATATAAGACACTTACAATTGTGTCCTGGGGTGTTTCCGTAAGAACT	CTGAAACAGAAAATTTCTACCAAGTCATTCACAATATATTATTTAGTTCAGATCATTCTTTGTAGTTTTCATAATATTTTGAACACTAGAATATAAGACACTTACAATTGTGTCCTGGGGTGTTTCCGTAAGAACT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	CDC27	NM_001114091	exon6	c.601_631del	p.201_211del	.	.	100.0	12.0	107.0	0.0	.	337	.	.	Pindel