Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm LAMTOR5 10542 hgsc.bcm.edu hg19 1 110950487 110950487 + Missense_Mutation SNP A A G novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . . NM_006402 exon1 c.T2C p.M1T GGCTCCATGGCGG . 132.0 28.0 137.0 0.0 . . . . Atlas-SNP SPAG17 200162 hgsc.bcm.edu hg19 1 118629516 118629516 + Missense_Mutation SNP C C A novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c SPAG17,colon,carcinoma,0,1 SPAG17 NM_206996 exon11 c.G1475T p.C492F GAGAGACAGAGTG . 125.0 25.0 177.0 0.0 . 263 . . Atlas-SNP TARS2 80222 hgsc.bcm.edu hg19 1 150461451 150461451 + Missense_Mutation SNP C C G novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . TARS2 NM_001271896 exon3 c.C275G p.A92G CACTGGCAGATAC . 101.0 17.0 72.0 0.0 . 91 . . Atlas-SNP CRNN 49860 hgsc.bcm.edu hg19 1 152382192 152382192 + Missense_Mutation SNP C C G novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . CRNN NM_016190 exon3 c.G1366C p.D456H CCTGGTCCAGCCT . 321.0 33.0 225.0 0.0 . 78 . . Atlas-SNP ARHGEF2 9181 hgsc.bcm.edu hg19 1 155935533 155935533 + Missense_Mutation SNP G G C novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . ARHGEF2 NM_001162383 exon5 c.C359G p.P120R GAGCTTGGCCGCT . 75.0 5.0 23.0 0.0 . 81 . . Atlas-SNP C1orf110 339512 hgsc.bcm.edu hg19 1 162824806 162824806 + Missense_Mutation SNP C C A novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . C1orf110 NM_178550 exon4 c.G658T p.G220W TGTTCCCATCTGG . 258.0 28.0 247.0 0.0 . 22 . . Atlas-SNP PKP1 5317 hgsc.bcm.edu hg19 1 201291111 201291111 + Silent SNP G G A novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . PKP1 NM_000299 exon9 c.G1416A p.V472V GTCTGTGGAAAAC . 113.0 18.0 119.0 0.0 . 127 . . Atlas-SNP DISC1 27185 hgsc.bcm.edu hg19 1 231858293 231858293 + Missense_Mutation SNP A A G novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . DISC1 NM_001164550 exon5 c.A1252G p.N418D GGAACCAATTGCT . 125.0 12.0 121.0 0.0 . 207 . . Atlas-SNP LHCGR 3973 hgsc.bcm.edu hg19 2 48925801 48925801 + Silent SNP C C T novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . LHCGR NM_000233 exon9 c.G819A p.L273L GTAAGTCAACGTG . 64.0 5.0 74.0 0.0 . 154 . . Atlas-SNP FN1 2335 hgsc.bcm.edu hg19 2 216249663 216249663 + Missense_Mutation SNP G G T rs202245868 by1000genomes;alternate_allele TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . FN1 NM_212482 exon29 c.C4649A p.A1550E GGGGTCGCAGCAA . 348.0 42.0 377.0 0.0 . 521 . G|1.000;A|0.000 Atlas-SNP CAND2 23066 hgsc.bcm.edu hg19 3 12859283 12859283 + Missense_Mutation SNP G G T novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . CAND2 NM_001162499 exon10 c.G2852T p.G951V AGGAGGGCACCCG . 68.0 10.0 90.0 0.0 . 138 . . Atlas-SNP SACM1L 22908 hgsc.bcm.edu hg19 3 45754687 45754687 + Missense_Mutation SNP A A T novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . SACM1L NM_014016 exon6 c.A542T p.E181V AGCCAGAGGTAAT . 18.0 7.0 21.0 0.0 . 38 . . Atlas-SNP MYH15 22989 hgsc.bcm.edu hg19 3 108127246 108127246 + Missense_Mutation SNP T T G novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . MYH15 NM_014981 exon33 c.A4561C p.I1521L TAGAAATCTCTTC . 108.0 25.0 88.0 0.0 . 223 . . Atlas-SNP KIAA1211 57482 hgsc.bcm.edu hg19 4 57164398 57164398 + Missense_Mutation SNP G G A novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . KIAA1211 NM_020722 exon4 c.G3A p.M1I TTCTATGGGAACC . 64.0 12.0 84.0 0.0 . 178 . . Atlas-SNP KIAA1211 57482 hgsc.bcm.edu hg19 4 57181429 57181429 + Silent SNP G G A novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . KIAA1211 NM_020722 exon8 c.G1761A p.S587S ACCGTCGTCCCTG . 32.0 14.0 24.0 0.0 . 178 . . Atlas-SNP LPHN3 23284 hgsc.bcm.edu hg19 4 62599267 62599267 + Missense_Mutation SNP G G T novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . LPHN3 NM_015236 exon5 c.G1190T p.R397I ATAGTAGATCAGG . 113.0 13.0 142.0 0.0 . 800 . . Atlas-SNP HPSE 10855 hgsc.bcm.edu hg19 4 84222134 84222134 + Missense_Mutation SNP C C T novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . HPSE NM_001098540 exon11 c.G1451A p.G484E TGAGGTCCCAAAG . 70.0 15.0 88.0 0.0 . 55 . . Atlas-SNP TACR3 6870 hgsc.bcm.edu hg19 4 104511152 104511152 + Splice_Site SNP C C G novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . TACR3 NM_001059 exon6 c.1086-1G>C . CGAAATCTGAGGA . 77.0 14.0 105.0 0.0 . 102 . . Atlas-SNP C5orf42 65250 hgsc.bcm.edu hg19 5 37176032 37176032 + Missense_Mutation SNP T T C novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . C5orf42 NM_023073 exon31 c.A5957G p.D1986G CTCGTATCTACTT . 141.0 21.0 82.0 0.0 . 422 . . Atlas-SNP TNPO1 3842 hgsc.bcm.edu hg19 5 72144312 72144312 + Missense_Mutation SNP G G T novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . TNPO1 NM_002270 exon2 c.G116T p.R39I TCCAGAGAACCGT . 60.0 4.0 49.0 0.0 . 90 . . Atlas-SNP PCDHGA5 56110 hgsc.bcm.edu hg19 5 140745937 140745937 + Silent SNP C C A novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . PCDHGA5 NM_032054 exon1 c.C2040A p.T680T CAAGACCCCCATT . 191.0 40.0 174.0 0.0 . 215 . . Atlas-SNP GPRC6A 222545 hgsc.bcm.edu hg19 6 117113958 117113958 + Missense_Mutation SNP T T C novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . GPRC6A NM_148963 exon6 c.A2128G p.T710A TGCAAGTGAAGAT . 103.0 15.0 110.0 0.0 . 152 . . Atlas-SNP THEMIS 387357 hgsc.bcm.edu hg19 6 128135050 128135050 + Missense_Mutation SNP G G T novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c THEMIS,NS,carcinoma,0,1 THEMIS NM_001010923 exon4 c.C736A p.P246T GACTGGGGAGGAT . 63.0 16.0 80.0 0.0 . 168 . . Atlas-SNP THEMIS 387357 hgsc.bcm.edu hg19 6 128135051 128135051 + Silent SNP G G T novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . THEMIS NM_001010923 exon4 c.C735A p.L245L ACTGGGGAGGATG . 63.0 16.0 79.0 0.0 . 168 . . Atlas-SNP MRPL32 64983 hgsc.bcm.edu hg19 7 42976921 42976921 + Missense_Mutation SNP A A G novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . MRPL32 NM_031903 exon3 c.A313G p.N105D TTAAAGAACAACA . 251.0 67.0 167.0 0.0 . 25 . . Atlas-SNP TOX 9760 hgsc.bcm.edu hg19 8 59750851 59750851 + Missense_Mutation SNP C C T novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . TOX NM_014729 exon5 c.G713A p.R238Q GCAGGCCGCTTCT . 37.0 5.0 22.0 0.0 . 83 . . Atlas-SNP RALYL 138046 hgsc.bcm.edu hg19 8 85799965 85799965 + Missense_Mutation SNP C C T novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . RALYL NM_001100391 exon8 c.C851T p.T284I AGATGACAGATGG . 278.0 18.0 135.0 0.0 . 123 . . Atlas-SNP TMEM2 23670 hgsc.bcm.edu hg19 9 74355033 74355033 + Missense_Mutation SNP A A G novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . TMEM2 NM_001135820 exon5 c.T1150C p.Y384H CAGTATAAAATTC . 85.0 21.0 88.0 0.0 . 112 . . Atlas-SNP CEP78 84131 hgsc.bcm.edu hg19 9 80861605 80861605 + Missense_Mutation SNP G G T novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . CEP78 NM_001098802 exon6 c.G799T p.G267C CAGTGCGGCCTCA . 76.0 4.0 64.0 0.0 . 79 . . Atlas-SNP GALNT12 79695 hgsc.bcm.edu hg19 9 101608380 101608380 + Missense_Mutation SNP A A G novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . GALNT12 NM_024642 exon9 c.A1580G p.E527G CCCCAGAGAATCA . 252.0 44.0 257.0 0.0 . 37 . . Atlas-SNP TLR4 7099 hgsc.bcm.edu hg19 9 120475751 120475751 + Missense_Mutation SNP C C T novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . TLR4 NM_138554 exon3 c.C1345T p.L449F AGAAACCTCATTT . 83.0 11.0 123.0 0.0 . 220 . . Atlas-SNP PRRC2B 84726 hgsc.bcm.edu hg19 9 134363453 134363453 + Silent SNP C C T novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . PRRC2B NM_013318 exon27 c.C6195T p.A2065A GGGTGCCTCCCAG . 113.0 14.0 108.0 0.0 . 266 . . Atlas-SNP ANKRD30A 91074 hgsc.bcm.edu hg19 10 37442511 37442511 + Silent SNP G G A novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . ANKRD30A NM_052997 exon13 c.G1551A p.E517E CTGTGAGACTGTT . 900.0 66.0 886.0 0.0 . 448 . . Atlas-SNP ARID5B 84159 hgsc.bcm.edu hg19 10 63851583 63851583 + Missense_Mutation SNP C C A novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . ARID5B NM_032199 exon10 c.C2361A p.S787R CTGCAGCTTCTCC . 96.0 16.0 98.0 0.0 . 125 . . Atlas-SNP LRIT1 26103 hgsc.bcm.edu hg19 10 86001094 86001094 + Missense_Mutation SNP C C A novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . LRIT1 NM_015613 exon1 c.G102T p.M34I ATCACCCATGATA . 181.0 70.0 153.0 0.0 . 73 . . Atlas-SNP CHUK 1147 hgsc.bcm.edu hg19 10 101953098 101953098 + Missense_Mutation SNP C C T novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . CHUK NM_001278 exon19 c.G2065A p.E689K CATGTTCTGCTGA . 119.0 24.0 115.0 0.0 . 71 . . Atlas-SNP DCHS1 8642 hgsc.bcm.edu hg19 11 6650989 6650989 + Missense_Mutation SNP T T C novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . DCHS1 NM_003737 exon11 c.A4949G p.Q1650R TGCTGCTGGAAAG . 66.0 9.0 58.0 0.0 . 277 . . Atlas-SNP SBF2 81846 hgsc.bcm.edu hg19 11 9829584 9829584 + Missense_Mutation SNP G G T novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . SBF2 NM_030962 exon32 c.C4406A p.A1469D ACTGGAGCAAAAC . 102.0 5.0 96.0 0.0 . 146 . . Atlas-SNP TEAD1 7003 hgsc.bcm.edu hg19 11 12958680 12958680 + Missense_Mutation SNP G G A novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . TEAD1 NM_021961 exon13 c.G1192A p.E398K ACACAAGAAACTC . 152.0 23.0 160.0 0.0 . 40 . . Atlas-SNP GLYATL1 92292 hgsc.bcm.edu hg19 11 58722261 58722261 + Missense_Mutation SNP G G A novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . GLYATL1 NM_080661 exon5 c.G298A p.D100N GACATGGATTCAT . 150.0 35.0 225.0 0.0 . 89 . . Atlas-SNP SLC35F2 54733 hgsc.bcm.edu hg19 11 107663412 107663412 + Missense_Mutation SNP T T C novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . SLC35F2 NM_017515 exon8 c.A1054G p.S352G CAATGCTGGTGAC . 79.0 20.0 120.0 0.0 . 29 . . Atlas-SNP KLRC4-KLRK1 0 hgsc.bcm.edu hg19 12 10531200 10531200 + Missense_Mutation SNP T T C novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . . NM_001199805 exon11 c.A382G p.M128V GAGACATACAAGA . 60.0 23.0 93.0 0.0 . . . . Atlas-SNP MON2 23041 hgsc.bcm.edu hg19 12 62926222 62926222 + Nonsense_Mutation SNP G G T novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c MON2,NS,carcinoma,0,1 MON2 NM_015026 exon12 c.G1405T p.E469X AGCTTAGAAATGT . 124.0 19.0 122.0 0.0 . 160 . . Atlas-SNP SETD1B 23067 hgsc.bcm.edu hg19 12 122252796 122252796 + Missense_Mutation SNP C C T novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . SETD1B NM_015048 exon6 c.C2675T p.A892V TCCGGGCCTTTGA . 119.0 30.0 130.0 0.0 . 105 . . Atlas-SNP BRCA2 675 hgsc.bcm.edu hg19 13 32914479 32914479 + Missense_Mutation SNP C C G rs80358834 alternate_allele TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . BRCA2 NM_000059 exon11 c.C5987G p.A1996G AAAACGCAAGACA . 56.0 22.0 66.0 0.0 . 812 . . Atlas-SNP PCDH17 27253 hgsc.bcm.edu hg19 13 58206732 58206732 + Missense_Mutation SNP C C A novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . PCDH17 NM_001040429 exon1 c.C52A p.L18I CTCACTCTCAAGA . 98.0 23.0 103.0 0.0 . 304 . . Atlas-SNP LMO7 4008 hgsc.bcm.edu hg19 13 76381696 76381696 + Missense_Mutation SNP C C A novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . LMO7 NM_015842 exon7 c.C578A p.T193N ATCCCACTTCTGG . 84.0 39.0 86.0 0.0 . 334 . . Atlas-SNP UBAC2 337867 hgsc.bcm.edu hg19 13 100020041 100020041 + Missense_Mutation SNP G G A novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . UBAC2 NM_001144072 exon8 c.G808A p.G270R TTTTAGGGAGGAA . 142.0 45.0 153.0 0.0 . 23 . . Atlas-SNP EXOC3L4 91828 hgsc.bcm.edu hg19 14 103568956 103568956 + Missense_Mutation SNP C C T rs371500721 TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . EXOC3L4 NM_001077594 exon2 c.C896T p.P299L TGCAGCCCGCGTA . 5.0 4.0 2.0 0.0 . 35 . . Atlas-SNP SHCBP1 79801 hgsc.bcm.edu hg19 16 46651615 46651615 + Silent SNP C C T novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . SHCBP1 NM_024745 exon3 c.G318A p.L106L CTTCTCCAAGAAC . 99.0 4.0 111.0 0.0 . 54 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7577082 7577082 + Missense_Mutation SNP C C T novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c TP53_ENST00000455263,NS,malignant_melanoma,0,1 TP53 NM_000546 exon8 c.G856A p.E286K TCTCTTCCTCTGT . 107.0 66.0 91.0 1.0 . 33396 . . Atlas-SNP VEZF1 7716 hgsc.bcm.edu hg19 17 56056622 56056622 + Silent SNP C C T novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . VEZF1 NM_007146 exon5 c.G1029A p.Q343Q CTGCTGCTGCTGC . 224.0 34.0 130.0 0.0 . 50 . . Atlas-SNP STRADA 92335 hgsc.bcm.edu hg19 17 61791458 61791458 + Missense_Mutation SNP G G A novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c STRADA,NS,carcinoma,0,1 STRADA NM_001003787 exon5 c.C134T p.A45V GAGCTCGCATCAT . 132.0 64.0 106.0 1.0 . 27 . . Atlas-SNP MYOM1 8736 hgsc.bcm.edu hg19 18 3083787 3083787 + Missense_Mutation SNP T T A novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . MYOM1 NM_003803 exon33 c.A4484T p.N1495I ACTTACTTGTGGG . 63.0 9.0 41.0 0.0 . 192 . . Atlas-SNP TXNDC2 84203 hgsc.bcm.edu hg19 18 9887134 9887134 + Nonsense_Mutation SNP A A T novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . TXNDC2 NM_001098529 exon2 c.A658T p.K220X CAGCCCAAGCTGG . 143.0 7.0 142.0 0.0 . 168 . . Atlas-SNP SLC14A1 6563 hgsc.bcm.edu hg19 18 43310324 43310324 + Silent SNP C C A novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . SLC14A1 NM_001146037 exon2 c.C207A p.P69P CAGCCCCACTATG . 165.0 12.0 104.0 0.0 . 84 . . Atlas-SNP ARID3A 1820 hgsc.bcm.edu hg19 19 932472 932472 + Missense_Mutation SNP G G C novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . ARID3A NM_005224 exon3 c.G423C p.E141D TGAGGAGGAGGAG . 59.0 13.0 53.0 0.0 . 35 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9060557 9060557 + Silent SNP G G A novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . MUC16 NM_024690 exon3 c.C26889T p.S8963S CACTTTGGATGGC . 305.0 65.0 308.0 0.0 . 4315 . . Atlas-SNP ZNF791 163049 hgsc.bcm.edu hg19 19 12739344 12739344 + Missense_Mutation SNP G G A novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . ZNF791 NM_153358 exon4 c.G1001A p.G334E AATGTGGGAAATC . 52.0 20.0 38.0 0.0 . 53 . . Atlas-SNP LPHN1 22859 hgsc.bcm.edu hg19 19 14274081 14274081 + Missense_Mutation SNP G G A rs369670781 TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . LPHN1 NM_001008701 exon6 c.C547T p.R183C CCGTGCGGTAGGG . 160.0 38.0 134.0 0.0 . 107 . . Atlas-SNP CLPTM1 1209 hgsc.bcm.edu hg19 19 45488541 45488541 + Missense_Mutation SNP G G A novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . CLPTM1 NM_001294 exon6 c.G652A p.A218T ACAGAAGCGGACC . 100.0 27.0 115.0 0.0 . 109 . . Atlas-SNP ERVV-1 147664 hgsc.bcm.edu hg19 19 53518514 53518514 + Missense_Mutation SNP C C T rs56636870 TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . ERVV-1 NM_152473 exon1 c.C1171T p.L391F GATTACCTCTTAG . 4.0 4.0 0.0 0.0 . 1 . . Atlas-SNP C20orf196 149840 hgsc.bcm.edu hg19 20 5843711 5843711 + Missense_Mutation SNP G G A novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . C20orf196 NM_152504 exon3 c.G220A p.A74T TGGACCGCTGAGA . 90.0 9.0 79.0 0.0 . 17 . . Atlas-SNP PTPRT 11122 hgsc.bcm.edu hg19 20 40980875 40980875 + Missense_Mutation SNP G G C novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c PTPRT,right_upper_lobe,carcinoma,0,1 PTPRT NM_007050 exon10 c.C1611G p.S537R CCTCTGGCTCGAG . 86.0 15.0 101.0 0.0 . 372 . . Atlas-SNP PI4KA 5297 hgsc.bcm.edu hg19 22 21153477 21153477 + Silent SNP G G A novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . PI4KA NM_058004 exon16 c.C1908T p.P636P CAGAATGGGCTCC . 64.0 17.0 60.0 0.0 . 313 . . Atlas-SNP ZNF280B 140883 hgsc.bcm.edu hg19 22 22843682 22843682 + Silent SNP C C T novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . ZNF280B NM_080764 exon4 c.G42A p.Q14Q GTTCTTCTGTGGT . 293.0 45.0 316.0 0.0 . 67 . . Atlas-SNP OTUD5 55593 hgsc.bcm.edu hg19 X 48814825 48814825 + Missense_Mutation SNP A A G novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . OTUD5 NM_001136157 exon1 c.T8C p.I3T GGGAGTATAGTCA . 55.0 43.0 47.0 0.0 . 66 . . Atlas-SNP ARHGEF6 9459 hgsc.bcm.edu hg19 X 135863020 135863020 + Missense_Mutation SNP C C T novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . ARHGEF6 NM_004840 exon1 c.G22A p.V8M ATGTCACGATTTG . 36.0 25.0 41.0 0.0 . 111 . . Atlas-SNP TRAM1L1 133022 hgsc.bcm.edu hg19 4 118005773 118005789 + Frame_Shift_Del DEL CAAGATAAACACAATGG CAAGATAAACACAATGG - novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 CAAGATAAACACAATGG CAAGATAAACACAATGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . TRAM1L1 NM_152402 exon1 c.762_778del p.254_260del . . 59.0 14.0 115.0 0.0 . 55 . . Atlas-Indel,Pindel METTL21C 196541 hgsc.bcm.edu hg19 13 103339396 103339396 + Frame_Shift_Del DEL C C - novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . METTL21C NM_001010977 exon3 c.295delT p.C99fs . . 64.0 10.0 74.0 0.0 . 23 . . Atlas-INDEL CACNA1E 777 hgsc.bcm.edu hg19 1 181725193 181725193 + Frame_Shift_Del DEL C C - novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . CACNA1E NM_000721 exon29 c.4090delA p.T1364fs . . 162.0 62.0 149.0 0.0 . 778 . . Atlas-Indel,Pindel ZNF512B 57473 hgsc.bcm.edu hg19 20 62597492 62597583 + Frame_Shift_Del DEL GACCTGGGACGAGCCCCCATACCTTTTCTTACCACTGTTCCTCCCCGACCTGGGACGAGCCCCCATACCTTTTCTTACCACTGTTCCTCCCT GACCTGGGACGAGCCCCCATACCTTTTCTTACCACTGTTCCTCCCCGACCTGGGACGAGCCCCCATACCTTTTCTTACCACTGTTCCTCCCT - novel TCGA-FV-A4ZP-01A-12D-A25V-10 TCGA-FV-A4ZP-11A-12D-A25V-10 GACCTGGGACGAGCCCCCATACCTTTTCTTACCACTGTTCCTCCCCGACCTGGGACGAGCCCCCATACCTTTTCTTACCACTGTTCCTCCCT GACCTGGGACGAGCCCCCATACCTTTTCTTACCACTGTTCCTCCCCGACCTGGGACGAGCCCCCATACCTTTTCTTACCACTGTTCCTCCCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 34a92167-000d-4968-bfc4-0a818857cbd4 d898cddf-8721-4cee-8a60-926c4c0dfc7c . ZNF512B NM_020713 exon5 c.1012_1034del p.338_345del . . 330.0 24.0 279.0 0.0 . 72 . . Pindel