Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm ZMYND12 84217 hgsc.bcm.edu hg19 1 42914268 42914268 + Nonsense_Mutation SNP G G T novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . ZMYND12 NM_032257 exon3 c.C294A p.Y98X AAAGAGGTATTTC . 88.0 38.0 119.0 0.0 . 35 . . Atlas-SNP DENND2D 79961 hgsc.bcm.edu hg19 1 111738547 111738547 + Silent SNP T T A novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . DENND2D NM_024901 exon6 c.A636T p.S212S AGTGCCTGAGTCG . 29.0 7.0 27.0 0.0 . 50 . . Atlas-SNP ANKRD34A 284615 hgsc.bcm.edu hg19 1 145474461 145474461 + Missense_Mutation SNP C C T novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . ANKRD34A NM_001039888 exon4 c.C1133T p.P378L CGGCTCCCTCTCC . 67.0 11.0 68.0 0.0 . 52 . . Atlas-SNP BCAN 63827 hgsc.bcm.edu hg19 1 156628362 156628362 + Missense_Mutation SNP C C A novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . BCAN NM_021948 exon13 c.C2465A p.P822H AGCTGCCCCTGGC . 63.0 6.0 58.0 0.0 . 174 . . Atlas-SNP OR6P1 128366 hgsc.bcm.edu hg19 1 158533217 158533217 + Missense_Mutation SNP A A T novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . OR6P1 NM_001160325 exon1 c.T178A p.Y60N AAAAGTACATGGG . 100.0 42.0 64.0 0.0 . 47 . . Atlas-SNP SPTA1 6708 hgsc.bcm.edu hg19 1 158655029 158655029 + Missense_Mutation SNP T T C novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . SPTA1 NM_003126 exon2 c.A133G p.R45G GACCCCTCTCAGC . 154.0 74.0 102.0 0.0 . 720 . . Atlas-SNP SELE 6401 hgsc.bcm.edu hg19 1 169702100 169702100 + Missense_Mutation SNP G G T novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . SELE NM_000450 exon3 c.C77A p.T26N GTGGAGGTGTTGT . 130.0 17.0 82.0 0.0 . 84 . . Atlas-SNP HHAT 55733 hgsc.bcm.edu hg19 1 210637950 210637950 + Missense_Mutation SNP G G A rs143700139 TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e HHAT,colon,carcinoma,0,1 HHAT NM_001170587 exon7 c.G961A p.A321T CCACCCGCCCTCC . 172.0 68.0 133.0 1.0 . 66 . G|1.000;A|0.000 Atlas-SNP PSD4 23550 hgsc.bcm.edu hg19 2 113940279 113940279 + Silent SNP C C T rs147089589 TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e PSD4,NS,carcinoma,0,1 PSD4 NM_012455 exon2 c.C246T p.D82D TCAGGACGGGCTG . 87.0 29.0 71.0 1.0 . 74 . C|1.000;T|0.000 Atlas-SNP LRP1B 53353 hgsc.bcm.edu hg19 2 141806729 141806729 + Missense_Mutation SNP C C A novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e LRP1B,NS,carcinoma,0,2 LRP1B NM_018557 exon11 c.G1615T p.D539Y TCAAGTCCATTCC . 220.0 67.0 182.0 0.0 . 1315 . . Atlas-SNP FMNL2 114793 hgsc.bcm.edu hg19 2 153471433 153471433 + Silent SNP T T C novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . FMNL2 NM_052905 exon12 c.T1131C p.D377D TTTTGATGTAGGA . 127.0 47.0 149.0 0.0 . 75 . . Atlas-SNP RPRM 56475 hgsc.bcm.edu hg19 2 154334986 154334986 + Missense_Mutation SNP G G T novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . RPRM NM_019845 exon1 c.C94A p.Q32K ACGCCTGGGTGCA . 30.0 9.0 28.0 0.0 . 12 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179436094 179436094 + Missense_Mutation SNP C C G novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e TTN_ENST00000359218,rectum,carcinoma,0,5 TTN NM_001267550 exon326 c.G74765C p.R24922T CTGTCCCTGGAGG . 170.0 47.0 142.0 0.0 . 18412 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179636192 179636192 + Missense_Mutation SNP G G T novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e TTN_ENST00000360870,colon,carcinoma,0,6 TTN NM_001267550 exon34 c.C7862A p.A2621D GAGATGGCCCCAC . 119.0 17.0 102.0 0.0 . 18412 . . Atlas-SNP ITGA4 3676 hgsc.bcm.edu hg19 2 182358113 182358113 + Silent SNP C C T novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . ITGA4 NM_000885 exon11 c.C1215T p.G405G CAATGGCCGTGCA . 115.0 28.0 106.0 0.0 . 142 . . Atlas-SNP STAT4 6775 hgsc.bcm.edu hg19 2 191927489 191927489 + Missense_Mutation SNP T T C novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . STAT4 NM_001243835 exon9 c.A940G p.N314D CTTACTTCTTGAA . 149.0 43.0 119.0 0.0 . 85 . . Atlas-SNP TRIP12 9320 hgsc.bcm.edu hg19 2 230724096 230724096 + Missense_Mutation SNP G G A novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . TRIP12 NM_004238 exon3 c.C293T p.T98I GATTCAGTATGCT . 201.0 70.0 156.0 0.0 . 207 . . Atlas-SNP IQCA1 79781 hgsc.bcm.edu hg19 2 237406078 237406078 + Missense_Mutation SNP C C T rs200469019 bycluster TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . IQCA1 NM_001270585 exon2 c.G85A p.D29N CTTTATCGAGTAA . 157.0 36.0 125.0 0.0 . 170 . . Atlas-SNP CHL1 10752 hgsc.bcm.edu hg19 3 361529 361529 + Missense_Mutation SNP G G T novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e CHL1,NS,carcinoma,0,1 CHL1 NM_001253388 exon1 c.G70T p.A24S TCAAAAGCAATTG . 46.0 15.0 26.0 0.0 . 242 . . Atlas-SNP GOLGA4 2803 hgsc.bcm.edu hg19 3 37367438 37367438 + Missense_Mutation SNP C C A novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . GOLGA4 NM_001172713 exon15 c.C4127A p.A1376D TCAATGCTGTCAC . 125.0 44.0 106.0 0.0 . 173 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41274911 41274911 + Missense_Mutation SNP T T G novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e CTNNB1,NS,carcinoma,0,5 CTNNB1 NM_001098209 exon8 c.T1161G p.N387K CAGGAATCTTTCA . 130.0 45.0 112.0 0.0 . 4904 . . Atlas-SNP CCDC71 64925 hgsc.bcm.edu hg19 3 49200370 49200370 + Silent SNP C C A novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . CCDC71 NM_022903 exon2 c.G1272T p.L424L GAACTTCAGCAGC . 139.0 23.0 130.0 0.0 . 33 . . Atlas-SNP CCDC66 285331 hgsc.bcm.edu hg19 3 56597778 56597778 + Missense_Mutation SNP A A G novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . CCDC66 NM_001141947 exon4 c.A169G p.T57A AAATCAACACAAG . 104.0 14.0 119.0 0.0 . 145 . . Atlas-SNP SPATA18 132671 hgsc.bcm.edu hg19 4 52948586 52948586 + Silent SNP T T C novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . SPATA18 NM_145263 exon10 c.T1389C p.A463A CACTGCTCCCTTA . 63.0 21.0 76.0 0.0 . 222 . . Atlas-SNP ALB 213 hgsc.bcm.edu hg19 4 74270860 74270860 + Missense_Mutation SNP A A G novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . ALB NM_000477 exon2 c.A107G p.K36R GGTTTAAAGATTT . 223.0 48.0 201.0 0.0 . 132 . . Atlas-SNP FRAS1 80144 hgsc.bcm.edu hg19 4 79396668 79396668 + Missense_Mutation SNP G G T rs373757948 alternate_allele TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . FRAS1 NM_025074 exon54 c.G7759T p.V2587F GCCATCGTCCTGT . 83.0 30.0 100.0 0.0 . 779 . . Atlas-SNP DSPP 1834 hgsc.bcm.edu hg19 4 88536020 88536020 + Missense_Mutation SNP G G A novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . DSPP NM_014208 exon5 c.G2206A p.D736N AGCAGTGACAGCA . 147.0 17.0 111.0 0.0 . 174 . . Atlas-SNP FAM13A 10144 hgsc.bcm.edu hg19 4 89772242 89772242 + Silent SNP T T C novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . FAM13A NM_014883 exon7 c.A936G p.L312L ATAACTTAGCCGC . 62.0 13.0 57.0 0.0 . 181 . . Atlas-SNP UNC5C 8633 hgsc.bcm.edu hg19 4 96141185 96141185 + Silent SNP C C A novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . UNC5C NM_003728 exon8 c.G1251T p.S417S GAGTGCCGAAGAG . 196.0 73.0 189.0 0.0 . 141 . . Atlas-SNP ZNF827 152485 hgsc.bcm.edu hg19 4 146696966 146696966 + Missense_Mutation SNP C C T novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . ZNF827 NM_178835 exon10 c.G2668A p.G890R TCTTCCCATCACT . 59.0 21.0 59.0 0.0 . 102 . . Atlas-SNP LRBA 987 hgsc.bcm.edu hg19 4 151770044 151770044 + Missense_Mutation SNP G G A novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . LRBA NM_006726 exon26 c.C4265T p.S1422F CCAAGAGAACTTG . 192.0 77.0 164.0 0.0 . 253 . . Atlas-SNP TAS2R1 50834 hgsc.bcm.edu hg19 5 9629277 9629277 + Nonsense_Mutation SNP T T A novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . TAS2R1 NM_019599 exon1 c.A868T p.K290X GGAACTTTTTTGC . 107.0 30.0 74.0 0.0 . 84 . . Atlas-SNP EGFLAM 133584 hgsc.bcm.edu hg19 5 38451432 38451432 + Silent SNP A A G novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . EGFLAM NM_001205301 exon20 c.A2583G p.R861R ATCAAGATCAAAT . 52.0 13.0 48.0 0.0 . 302 . . Atlas-SNP HCN1 348980 hgsc.bcm.edu hg19 5 45353238 45353238 + Missense_Mutation SNP T T A novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . HCN1 NM_021072 exon5 c.A1341T p.E447D AATATTTTCCTCA . 124.0 15.0 103.0 0.0 . 298 . . Atlas-SNP CDC20B 166979 hgsc.bcm.edu hg19 5 54468477 54468477 + Missense_Mutation SNP T T C novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . CDC20B NM_001170402 exon2 c.A65G p.E22G ATACTTTCCTTTG . 54.0 10.0 53.0 0.0 . 61 . . Atlas-SNP MAP3K1 4214 hgsc.bcm.edu hg19 5 56178151 56178151 + Missense_Mutation SNP C C G novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . MAP3K1 NM_005921 exon14 c.C3124G p.L1042V GATAAACTTTCCC . 96.0 28.0 100.0 0.0 . 355 . . Atlas-SNP TRIM36 55521 hgsc.bcm.edu hg19 5 114506845 114506845 + Missense_Mutation SNP G G T novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . TRIM36 NM_001017397 exon2 c.C138A p.D46E GGAGAAGTCTGTC . 129.0 15.0 108.0 0.0 . 126 . . Atlas-SNP CHSY3 337876 hgsc.bcm.edu hg19 5 129241310 129241310 + Missense_Mutation SNP A A T novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . CHSY3 NM_175856 exon1 c.A788T p.D263V ACGACGATGTCTA . 62.0 22.0 49.0 0.0 . 92 . . Atlas-SNP GLRA1 2741 hgsc.bcm.edu hg19 5 151304062 151304062 + Missense_Mutation SNP A A G novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . GLRA1 NM_000171 exon1 c.T49C p.F17L TGAAGAATACAAT . 90.0 30.0 81.0 0.0 . 61 . . Atlas-SNP ERGIC1 57222 hgsc.bcm.edu hg19 5 172359509 172359509 + Silent SNP G G A rs144844076 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . ERGIC1 NM_001031711 exon8 c.G612A p.R204R GCAGCGGTACTCC . 50.0 5.0 47.0 0.0 . 35 . G|0.993;T|0.007 Atlas-SNP RUFY1 80230 hgsc.bcm.edu hg19 5 179023595 179023595 + Missense_Mutation SNP C C T novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . RUFY1 NM_025158 exon13 c.C1544T p.A515V AGGGGGCTGAGGA . 39.0 13.0 36.0 0.0 . 101 . . Atlas-SNP DSP 1832 hgsc.bcm.edu hg19 6 7585457 7585457 + Silent SNP G G A novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . DSP NM_004415 exon24 c.G7962A p.Q2654Q GGCTCAGGCCTGC . 86.0 17.0 77.0 0.0 . 306 . . Atlas-SNP UHRF1BP1 54887 hgsc.bcm.edu hg19 6 34827055 34827055 + Silent SNP C C G novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . UHRF1BP1 NM_017754 exon14 c.C2922G p.S974S AGAGTCCCTACAG . 70.0 27.0 52.0 0.0 . 102 . . Atlas-SNP EFHC1 114327 hgsc.bcm.edu hg19 6 52334232 52334232 + Silent SNP G G A novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . EFHC1 NM_018100 exon7 c.G1239A p.L413L AATGCTGGTGAAT . 61.0 19.0 64.0 0.0 . 68 . . Atlas-SNP RAB23 51715 hgsc.bcm.edu hg19 6 57055398 57055398 + Missense_Mutation SNP C C A novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . RAB23 NM_016277 exon7 c.G575T p.G192V AAGACACCTGTAT . 93.0 34.0 95.0 0.0 . 22 . . Atlas-SNP FILIP1 27145 hgsc.bcm.edu hg19 6 76024199 76024199 + Missense_Mutation SNP G G A novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . FILIP1 NM_015687 exon5 c.C1349T p.T450I AGCTGGGTGCACT . 227.0 70.0 201.0 0.0 . 173 . . Atlas-SNP ARMC2 84071 hgsc.bcm.edu hg19 6 109190048 109190048 + Missense_Mutation SNP C C G novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . ARMC2 NM_032131 exon4 c.C313G p.P105A GCATCTCCCACCA . 49.0 16.0 56.0 0.0 . 56 . . Atlas-SNP ACAT2 39 hgsc.bcm.edu hg19 6 160196295 160196295 + Missense_Mutation SNP C C T novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . ACAT2 NM_005891 exon5 c.C584T p.A195V AGAAAGCTGGCCA . 70.0 18.0 67.0 0.0 . 32 . . Atlas-SNP STEAP2 261729 hgsc.bcm.edu hg19 7 89854507 89854507 + Silent SNP A A G novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . STEAP2 NM_001244946 exon3 c.A111G p.G37G GATTGGAAGTGGA . 191.0 50.0 177.0 0.0 . 78 . . Atlas-SNP RELN 5649 hgsc.bcm.edu hg19 7 103159876 103159876 + Missense_Mutation SNP T T A novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . RELN NM_173054 exon49 c.A7756T p.T2586S TTGGTGTAATCAG . 121.0 16.0 95.0 0.0 . 593 . . Atlas-SNP OR2A12 346525 hgsc.bcm.edu hg19 7 143792372 143792372 + Missense_Mutation SNP A A G novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . OR2A12 NM_001004135 exon1 c.A172G p.M58V ACACCCATGTATG . 131.0 44.0 131.0 0.0 . 56 . . Atlas-SNP PTPRN2 5799 hgsc.bcm.edu hg19 7 157369433 157369433 + Missense_Mutation SNP G G C novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . PTPRN2 NM_002847 exon19 c.C2655G p.F885L CACCAGGAAGTCC . 41.0 9.0 40.0 0.0 . 243 . . Atlas-SNP CSMD1 64478 hgsc.bcm.edu hg19 8 3063095 3063095 + Missense_Mutation SNP G G T novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . CSMD1 NM_033225 exon31 c.C4915A p.P1639T AGTTTGGTGATAA . 26.0 18.0 31.0 0.0 . 1469 . . Atlas-SNP CNGB3 54714 hgsc.bcm.edu hg19 8 87645119 87645119 + Missense_Mutation SNP T T G novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . CNGB3 NM_019098 exon11 c.A1181C p.Y394S CTCAGATACCTGT . 243.0 77.0 172.0 0.0 . 176 . . Atlas-SNP RRM2B 50484 hgsc.bcm.edu hg19 8 103237178 103237178 + Silent SNP G G T novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . RRM2B NM_001172477 exon4 c.C606A p.I202I ATTCTCGATGAGA . 162.0 33.0 71.0 0.0 . 31 . . Atlas-SNP FAM84B 157638 hgsc.bcm.edu hg19 8 127568717 127568717 + Missense_Mutation SNP C C G novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . FAM84B NM_174911 exon2 c.G918C p.E306D CACTGCCTCTCCG . 70.0 7.0 49.0 0.0 . 19 . . Atlas-SNP ADCY8 114 hgsc.bcm.edu hg19 8 132051783 132051783 + Missense_Mutation SNP A A C novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . ADCY8 NM_001115 exon1 c.T797G p.L266R CCCAGGAGCCCGT . 95.0 20.0 53.0 0.0 . 291 . . Atlas-SNP CA9 768 hgsc.bcm.edu hg19 9 35674288 35674288 + Missense_Mutation SNP A A C novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . CA9 NM_001216 exon1 c.A332C p.E111A AGTTAGAGGATCT . 67.0 19.0 68.0 0.0 . 48 . . Atlas-SNP STXBP1 6812 hgsc.bcm.edu hg19 9 130428513 130428513 + Silent SNP C C A novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . STXBP1 NM_001032221 exon9 c.C732A p.L244L TGTGCTCCATGAA . 54.0 17.0 53.0 0.0 . 99 . . Atlas-SNP SLC39A12 221074 hgsc.bcm.edu hg19 10 18292223 18292223 + Missense_Mutation SNP G G A novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e SLC39A12,NS,carcinoma,0,3 SLC39A12 NM_001145195 exon12 c.G1883A p.C628Y ATCCATGTGTTCA . 163.0 65.0 123.0 0.0 . 181 . . Atlas-SNP MYO3A 53904 hgsc.bcm.edu hg19 10 26436361 26436361 + Silent SNP C C A novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e MYO3A,NS,carcinoma,0,1 MYO3A NM_017433 exon23 c.C2508A p.V836V ACAGGTCCTCTAT . 106.0 14.0 92.0 0.0 . 371 . . Atlas-SNP MYO3A 53904 hgsc.bcm.edu hg19 10 26465727 26465727 + Missense_Mutation SNP A A G novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . MYO3A NM_017433 exon31 c.A4391G p.H1464R TCTCGCACCATAA . 85.0 21.0 102.0 0.0 . 371 . . Atlas-SNP ZNF488 118738 hgsc.bcm.edu hg19 10 48371172 48371172 + Missense_Mutation SNP G G A novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . ZNF488 NM_153034 exon2 c.G640A p.V214I CTTTTGGTTGGTG . 47.0 13.0 57.0 0.0 . 38 . . Atlas-SNP DNA2 1763 hgsc.bcm.edu hg19 10 70192040 70192040 + Missense_Mutation SNP C C G rs201999986 bycluster;alternate_allele TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . DNA2 NM_001080449 exon12 c.G1796C p.R599P GGTTCACGAAAGT . 171.0 23.0 209.0 0.0 . 76 . . Atlas-SNP VAX1 11023 hgsc.bcm.edu hg19 10 118896162 118896162 + Missense_Mutation SNP C C T novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . VAX1 NM_001112704 exon2 c.G250A p.G84R TGGACCCCTTGGC . 50.0 15.0 41.0 0.0 . 50 . . Atlas-SNP VAX1 11023 hgsc.bcm.edu hg19 10 118896163 118896163 + Silent SNP C C T novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . VAX1 NM_001112704 exon2 c.G249A p.K83K GGACCCCTTGGCA . 50.0 15.0 42.0 0.0 . 50 . . Atlas-SNP CD81 975 hgsc.bcm.edu hg19 11 2417938 2417938 + Silent SNP G G T novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . CD81 NM_004356 exon7 c.G642T p.V214V CGCTGTGATCATG . 38.0 4.0 47.0 0.0 . 11 . . Atlas-SNP KCNE3 10008 hgsc.bcm.edu hg19 11 74168404 74168404 + Missense_Mutation SNP C C G novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . KCNE3 NM_005472 exon3 c.G205C p.A69P TTACAGCAAATAG . 98.0 18.0 105.0 0.0 . 7 . . Atlas-SNP TRIM49C 642612 hgsc.bcm.edu hg19 11 89774525 89774525 + Missense_Mutation SNP G G T novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . TRIM49C NM_001195234 exon8 c.G1166T p.C389F TTCAATGCAGTCT . 98.0 33.0 122.0 0.0 . 48 . . Atlas-SNP PGR 5241 hgsc.bcm.edu hg19 11 100999292 100999292 + Missense_Mutation SNP G G C novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . PGR NM_000926 exon1 c.C510G p.C170W AACCTTGCACCCG . 13.0 5.0 15.0 0.0 . 115 . . Atlas-SNP CARD18 59082 hgsc.bcm.edu hg19 11 105009742 105009742 + Missense_Mutation SNP G G T novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e .,1 CARD18 NM_021571 exon2 c.C71A p.A24D AGCAAGGCATTTA . 126.0 59.0 118.0 1.0 . 18 . . Atlas-SNP DDX10 1662 hgsc.bcm.edu hg19 11 108712068 108712068 + Missense_Mutation SNP G G T novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e DDX10,NS,carcinoma,0,1 DDX10 NM_004398 exon15 c.G2112T p.Q704H AATGCAGAAATCT . 230.0 85.0 217.0 0.0 . 70 . . Atlas-SNP TMPRSS13 84000 hgsc.bcm.edu hg19 11 117784524 117784524 + Silent SNP T T C novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . TMPRSS13 NM_001206790 exon5 c.A777G p.S259S CTTCTCTGAGTAG . 60.0 12.0 42.0 0.0 . 75 . . Atlas-SNP ATN1 1822 hgsc.bcm.edu hg19 12 7047886 7047886 + Silent SNP C C T novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . ATN1 NM_001007026 exon7 c.C2760T p.V920V CAATGTCCCGGCC . 43.0 14.0 45.0 0.0 . 95 . . Atlas-SNP CLEC9A 283420 hgsc.bcm.edu hg19 12 10205339 10205339 + Missense_Mutation SNP A A T novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . CLEC9A NM_207345 exon4 c.A53T p.D18V CACCAGACACTTA . 88.0 23.0 83.0 0.0 . 41 . . Atlas-SNP KLRC2 3822 hgsc.bcm.edu hg19 12 10587104 10587104 + Silent SNP C C T novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . KLRC2 NM_002260 exon3 c.G312A p.P104P TGTATTCGGGGAA . 590.0 104.0 562.0 0.0 . 29 . . Atlas-SNP TMEM106C 79022 hgsc.bcm.edu hg19 12 48359775 48359775 + Missense_Mutation SNP A A G novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . TMEM106C NM_001143843 exon4 c.A406G p.I136V CTCACCATCATGG . 145.0 40.0 127.0 0.0 . 24 . . Atlas-SNP TROAP 10024 hgsc.bcm.edu hg19 12 49724529 49724529 + Missense_Mutation SNP G G A novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . TROAP NM_005480 exon13 c.G1901A p.G634E CCCCAGGGCCCTG . 39.0 15.0 36.0 0.0 . 80 . . Atlas-SNP DCD 117159 hgsc.bcm.edu hg19 12 55040929 55040929 + Missense_Mutation SNP C C A novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . DCD NM_053283 exon2 c.G73T p.A25S CAGAGGCGGCCTC . 57.0 18.0 48.0 0.0 . 20 . . Atlas-SNP NAV3 89795 hgsc.bcm.edu hg19 12 78400495 78400495 + Missense_Mutation SNP G G A novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . NAV3 NM_014903 exon8 c.G1177A p.A393T GTCAATGCCCGGA . 121.0 28.0 107.0 0.0 . 506 . . Atlas-SNP DAOA 267012 hgsc.bcm.edu hg19 13 106142291 106142291 + Missense_Mutation SNP C C A novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . DAOA NM_172370 exon4 c.C323A p.A108E TCATGGCAAGAAA . 91.0 26.0 64.0 0.0 . 26 . . Atlas-SNP PARP2 10038 hgsc.bcm.edu hg19 14 20822996 20822996 + Silent SNP A A C novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . PARP2 NM_005484 exon9 c.A831C p.A277A CAAGGCAGGTTAC . 91.0 30.0 100.0 0.0 . 92 . . Atlas-SNP LRFN5 145581 hgsc.bcm.edu hg19 14 42356953 42356953 + Missense_Mutation SNP T T G novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . LRFN5 NM_152447 exon3 c.T1125G p.I375M TATAATTAAGCTC . 94.0 34.0 88.0 0.0 . 269 . . Atlas-SNP LTBP2 4053 hgsc.bcm.edu hg19 14 74989512 74989512 + Silent SNP G G T novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . LTBP2 NM_000428 exon16 c.C2640A p.P880P CTGGCTGGGGTGC . 42.0 17.0 26.0 0.0 . 158 . . Atlas-SNP TDRD9 122402 hgsc.bcm.edu hg19 14 104506642 104506642 + Missense_Mutation SNP G G A rs182776644 bycluster;by1000genomes;alternate_allele TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . TDRD9 NM_153046 exon33 c.G3826A p.V1276I TTTGACGTTCAAT . 90.0 25.0 93.0 0.0 . 175 . G|1.000;T|0.000 Atlas-SNP PLCB2 5330 hgsc.bcm.edu hg19 15 40585896 40585896 + Silent SNP G G A novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . PLCB2 NM_004573 exon20 c.C2091T p.R697R CACGCTGCGTTCT . 98.0 23.0 91.0 0.0 . 177 . . Atlas-SNP PLA2G4F 255189 hgsc.bcm.edu hg19 15 42436338 42436338 + Silent SNP T T A novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . PLA2G4F NM_213600 exon18 c.A1980T p.T660T CGGGTGTGTGTCT . 34.0 10.0 26.0 0.0 . 75 . . Atlas-SNP CSPG4 1464 hgsc.bcm.edu hg19 15 75969717 75969717 + Missense_Mutation SNP C C T novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . CSPG4 NM_001897 exon10 c.G5143A p.V1715I CGGGGACCCAGAG . 38.0 18.0 41.0 0.0 . 175 . . Atlas-SNP RASGRF1 5923 hgsc.bcm.edu hg19 15 79298691 79298691 + Missense_Mutation SNP C C T novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e RASGRF1,NS,carcinoma,+2,1 RASGRF1 NM_002891 exon15 c.G1951A p.A651T CACTGGCGTAGCG . 74.0 20.0 57.0 0.0 . 168 . . Atlas-SNP TPPP3 51673 hgsc.bcm.edu hg19 16 67424387 67424387 + Missense_Mutation SNP C C T rs146906089 TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . TPPP3 NM_016140 exon4 c.G337A p.V113I CAGTGACGCCCAC . 65.0 16.0 55.0 0.0 . 13 . C|1.000;T|0.000 Atlas-SNP CDRT1 374286 hgsc.bcm.edu hg19 17 15510886 15510886 + Splice_Site SNP A A T novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . CDRT1 NM_006382 exon7 c.1232+2T>A . GTACCTACGTGTC . 139.0 57.0 123.0 0.0 . 83 . . Atlas-SNP MRC2 9902 hgsc.bcm.edu hg19 17 60766320 60766320 + Silent SNP G G T rs144406119 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . MRC2 NM_006039 exon23 c.G3333T p.T1111T GGGCACGGGTATG . 67.0 25.0 80.0 0.0 . 126 . G|0.993;A|0.007 Atlas-SNP AFMID 125061 hgsc.bcm.edu hg19 17 76183452 76183452 + Missense_Mutation SNP A A G novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . AFMID NM_001145526 exon1 c.A1G p.M1V GACGCCATGATGG . 43.0 12.0 48.0 0.0 . 38 . . Atlas-SNP DNAH17 8632 hgsc.bcm.edu hg19 17 76565546 76565546 + Silent SNP G G A novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . DNAH17 NM_173628 exon8 c.C1108T p.L370L CACTCAGGACTTC . 77.0 27.0 84.0 0.0 . 347 . . Atlas-SNP ME2 4200 hgsc.bcm.edu hg19 18 48450496 48450496 + Missense_Mutation SNP A A T novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . ME2 NM_001168335 exon11 c.A1085T p.Q362L GTTATCAGGAACC . 197.0 27.0 164.0 0.0 . 49 . . Atlas-SNP CNDP2 55748 hgsc.bcm.edu hg19 18 72183571 72183571 + Missense_Mutation SNP G G T novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e CNDP2,caecum,carcinoma,-1,1 CNDP2 NM_018235 exon9 c.G1012T p.G338C GTGGTTGGCAAGT . 65.0 24.0 57.0 0.0 . 55 . . Atlas-SNP CNDP2 55748 hgsc.bcm.edu hg19 18 72183572 72183572 + Missense_Mutation SNP G G T novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e CNDP2,caecum,carcinoma,0,1 CNDP2 NM_018235 exon9 c.G1013T p.G338V TGGTTGGCAAGTT . 63.0 22.0 56.0 0.0 . 55 . . Atlas-SNP FEM1A 55527 hgsc.bcm.edu hg19 19 4792915 4792915 + Missense_Mutation SNP A A C novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . FEM1A NM_018708 exon1 c.A1049C p.Y350S ATGACTATTCCAG . 44.0 13.0 26.0 0.0 . 41 . . Atlas-SNP ZNF626 199777 hgsc.bcm.edu hg19 19 20807980 20807980 + Missense_Mutation SNP C C A novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . ZNF626 NM_001076675 exon4 c.G703T p.G235C CTTTGCCACATTC . 39.0 8.0 29.0 0.0 . 121 . . Atlas-SNP SRRM5 100170229 hgsc.bcm.edu hg19 19 44116772 44116772 + Missense_Mutation SNP G G A novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . SRRM5 NM_001145641 exon1 c.G499A p.G167R CAAAAAGGGAGCC . 59.0 15.0 36.0 0.0 . 38 . . Atlas-SNP PPP5C 5536 hgsc.bcm.edu hg19 19 46857048 46857048 + Silent SNP C C T rs374930457 TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . PPP5C NM_006247 exon2 c.C165T p.I55I GGCCATCGAGCTG . 78.0 23.0 77.0 0.0 . 44 . . Atlas-SNP NKG7 4818 hgsc.bcm.edu hg19 19 51875422 51875422 + Silent SNP A A G novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . NKG7 NM_005601 exon2 c.T297C p.F99F TGCAGCAAAGGCT . 44.0 9.0 37.0 0.0 . 20 . . Atlas-SNP ZNF350 59348 hgsc.bcm.edu hg19 19 52468795 52468795 + Missense_Mutation SNP T T G novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . ZNF350 NM_021632 exon5 c.A911C p.N304T ATGAGATTTCCTT . 183.0 57.0 152.0 0.0 . 48 . . Atlas-SNP ZNF665 79788 hgsc.bcm.edu hg19 19 53668481 53668481 + Missense_Mutation SNP C C A rs375603672 bycluster;alternate_allele TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e .,2 ZNF665 NM_024733 exon4 c.G1262T p.R421L ATTCTTCGATGAT . 94.0 29.0 74.0 0.0 . 136 . . Atlas-SNP CACNG7 59284 hgsc.bcm.edu hg19 19 54445427 54445427 + Silent SNP G G A novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . CACNG7 NM_031896 exon5 c.G708A p.A236A CGAGGCGTGGCGC . 47.0 19.0 59.0 0.0 . 58 . . Atlas-SNP NLRP7 199713 hgsc.bcm.edu hg19 19 55453049 55453049 + Missense_Mutation SNP G G C novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . NLRP7 NM_001127255 exon2 c.C31G p.Q11E GGGTCTGCAGAGT . 93.0 24.0 93.0 0.0 . 411 . . Atlas-SNP PEG3 5178 hgsc.bcm.edu hg19 19 57326459 57326459 + Silent SNP C C T novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . PEG3 NM_001146184 exon9 c.G3351A p.V1117V GAGATCCACAAAG . 64.0 23.0 72.0 0.0 . 414 . . Atlas-SNP SNTA1 6640 hgsc.bcm.edu hg19 20 32000381 32000381 + Silent SNP C C T novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . SNTA1 NM_003098 exon4 c.G909A p.Q303Q AGGTACCTGCTCA . 42.0 14.0 44.0 0.0 . 35 . . Atlas-SNP CDH4 1002 hgsc.bcm.edu hg19 20 60348088 60348088 + Silent SNP G G T novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . CDH4 NM_001794 exon4 c.G426T p.L142L GGCTCTGGACCCC . 49.0 9.0 49.0 0.0 . 172 . . Atlas-SNP FBLN1 2192 hgsc.bcm.edu hg19 22 45946402 45946402 + Missense_Mutation SNP A A G novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . FBLN1 NM_006487 exon14 c.A1604G p.N535S TCCACAACTGCTC . 46.0 9.0 38.0 0.0 . 143 . . Atlas-SNP TEX11 56159 hgsc.bcm.edu hg19 X 69942515 69942515 + Silent SNP G G A novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . TEX11 NM_001003811 exon14 c.C1002T p.P334P GTCTAAGGGCATG . 63.0 43.0 55.0 0.0 . 132 . . Atlas-SNP IFT140 9742 hgsc.bcm.edu hg19 16 1634278 1634278 + Frame_Shift_Del DEL G G - novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . IFT140 NM_014714 exon11 c.1300delA p.T434fs . . 33.0 11.0 18.0 0.0 . 128 . . Atlas-INDEL APOB 338 hgsc.bcm.edu hg19 2 21232125 21232125 + Frame_Shift_Del DEL C C - novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . APOB NM_000384 exon26 c.7616delT p.V2539fs . . 137.0 18.0 105.0 0.0 . 761 . . Atlas-Indel,Pindel ZNRF3 84133 hgsc.bcm.edu hg19 22 29445870 29445871 + Frame_Shift_Del DEL TG TG - novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 TG TG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . ZNRF3 NM_001206998 exon8 c.1700_1701del p.567_567del . . 42.0 10.0 42.0 0.0 . 75 . . Atlas-INDEL CTSB 1508 hgsc.bcm.edu hg19 8 11705274 11705274 + Frame_Shift_Del DEL G G - novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . CTSB NM_147782 exon8 c.591delA p.P197fs . . 51.0 15.0 60.0 0.0 . 24 . . Atlas-INDEL CDH9 1007 hgsc.bcm.edu hg19 5 26881520 26881521 + Frame_Shift_Ins INS - - A novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . CDH9 NM_016279 exon12 c.2095_2096insT p.Q699fs . . 166.0 46.0 149.0 0.0 . 305 . . Atlas-INDEL FIGN 55137 hgsc.bcm.edu hg19 2 164467480 164467481 + Frame_Shift_Ins INS - - G novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . FIGN NM_018086 exon3 c.862_863insC p.T288fs . . 67.0 12.0 70.0 0.0 . 106 . . Atlas-INDEL CORO6 84940 hgsc.bcm.edu hg19 17 27943827 27943828 + Frame_Shift_Del DEL CT CT - novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 CT CT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . CORO6 NM_032854 exon7 c.897_898del p.299_300del . . 66.0 20.0 61.0 0.0 . 34 . . Atlas-Indel,Pindel CCDC144NL 339184 hgsc.bcm.edu hg19 17 20769875 20769875 + Frame_Shift_Del DEL G G - novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . CCDC144NL NM_001004306 exon3 c.558delA p.P186fs . . 82.0 13.0 71.0 0.0 . 34 . . Atlas-INDEL BIRC7 79444 hgsc.bcm.edu hg19 20 61867529 61867529 + Frame_Shift_Del DEL G G - novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . BIRC7 NM_139317 exon1 c.80delA p.Q27fs . . 79.0 14.0 96.0 0.0 . 25 . . Atlas-Indel,Pindel ATXN7L2 127002 hgsc.bcm.edu hg19 1 110029743 110029743 + Frame_Shift_Del DEL C C - novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . ATXN7L2 NM_153340 exon4 c.412delG p.A138fs . . 114.0 33.0 111.0 0.0 . 60 . . Atlas-Indel,Pindel EP400NL 347918 hgsc.bcm.edu hg19 12 132588784 132588791 + RNA DEL GGGAAGCC GGGAAGCC - novel TCGA-FV-A2QQ-01A-11D-A22F-10 TCGA-FV-A2QQ-10B-01D-A22F-10 GGGAAGCC GGGAAGCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4904d56f-0fe7-4482-8f6d-9e54d261f399 e31c3b51-9a28-4191-b67f-21ac68e47c1e . EP400NL . . . . . . 102.0 20.0 162.0 0.0 . 29 . . Atlas-INDEL