Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
ARID1A	8289	hgsc.bcm.edu	hg19	1	27101342	27101342	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	ARID1A,caecum,carcinoma,-2,1	ARID1A	NM_006015	exon18	c.G4624T	p.E1542X	AACCACGAAGGCT	.	50.0	36.0	79.0	0.0	.	842	.	.	Atlas-SNP
AKIRIN1	79647	hgsc.bcm.edu	hg19	1	39463936	39463936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	AKIRIN1	NM_024595	exon2	c.C314T	p.S105L	GTGCTTCGGAAAG	.	38.0	24.0	68.0	0.0	.	7	.	.	Atlas-SNP
PRMT6	55170	hgsc.bcm.edu	hg19	1	107599362	107599362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PRMT6	NM_018137	exon1	c.C25T	p.L9F	AGAAAGCTTGAGT	.	34.0	14.0	37.0	0.0	.	55	.	.	Atlas-SNP
PRPF38B	55119	hgsc.bcm.edu	hg19	1	109242492	109242492	+	Silent	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PRPF38B	NM_018061	exon6	c.T1491C	p.S497S	AAAATCTAGAAAG	.	206.0	75.0	183.0	0.0	.	55	.	.	Atlas-SNP
LRIF1	55791	hgsc.bcm.edu	hg19	1	111494007	111494007	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	LRIF1	NM_018372	exon2	c.A1499G	p.K500R	CTTCCTTTTCTAG	.	128.0	44.0	135.0	0.0	.	65	.	.	Atlas-SNP
NUP210L	91181	hgsc.bcm.edu	hg19	1	154042865	154042865	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	NUP210L	NM_001159484	exon17	c.T2438C	p.F813S	GAACTGAAATTAT	.	142.0	47.0	121.0	0.0	.	181	.	.	Atlas-SNP
LMNA	4000	hgsc.bcm.edu	hg19	1	156106182	156106182	+	Silent	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	LMNA	NM_170707	exon7	c.G1335T	p.V445V	GGAGGTGGATGAG	.	69.0	35.0	53.0	0.0	.	31	.	.	Atlas-SNP
LMNA	4000	hgsc.bcm.edu	hg19	1	156106183	156106183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	LMNA	NM_170707	exon7	c.G1336A	p.D446N	GAGGTGGATGAGG	.	68.0	35.0	53.0	0.0	.	31	.	.	Atlas-SNP
NUF2	83540	hgsc.bcm.edu	hg19	1	163325198	163325198	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	NUF2	NM_145697	exon14	c.A1334G	p.Y445C	ACTCCTATGCTAA	.	272.0	65.0	207.0	0.0	.	138	.	.	Atlas-SNP
IL18R1	8809	hgsc.bcm.edu	hg19	2	102988510	102988510	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	IL18R1	NM_003855	exon3	c.A400C	p.K134Q	GTTAAAAAATTTT	.	178.0	65.0	190.0	0.0	.	72	.	.	Atlas-SNP
ZNF804A	91752	hgsc.bcm.edu	hg19	2	185800964	185800964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ZNF804A	NM_194250	exon4	c.C841T	p.P281S	CATCCACCAGAGG	.	46.0	16.0	24.0	0.0	.	322	.	.	Atlas-SNP
STXBP5L	9515	hgsc.bcm.edu	hg19	3	120876465	120876465	+	Missense_Mutation	SNP	A	A	G	rs371884493		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	STXBP5L	NM_014980	exon9	c.A868G	p.I290V	ACCACAATTCCAC	.	51.0	12.0	70.0	0.0	.	159	.	.	Atlas-SNP
COL6A6	131873	hgsc.bcm.edu	hg19	3	130282231	130282231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	COL6A6	NM_001102608	exon2	c.G384T	p.K128N	AGACAAGAAACAG	.	75.0	36.0	86.0	0.0	.	497	.	.	Atlas-SNP
PIK3R4	30849	hgsc.bcm.edu	hg19	3	130427320	130427320	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PIK3R4	NM_014602	exon10	c.A2348T	p.E783V	TCTTCCTCTTCCT	.	200.0	78.0	163.0	0.0	.	145	.	.	Atlas-SNP
EXOC1	55763	hgsc.bcm.edu	hg19	4	56744128	56744128	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	EXOC1	NM_018261	exon9	c.A1120G	p.T374A	GAACTGACTTTAC	.	71.0	24.0	60.0	0.0	.	103	.	.	Atlas-SNP
CENPC1	1060	hgsc.bcm.edu	hg19	4	68396566	68396566	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CENPC1	NM_001812	exon5	c.G298T	p.V100F	CTACAACAAACTG	.	66.0	18.0	57.0	0.0	.	66	.	.	Atlas-SNP
PF4V1	5197	hgsc.bcm.edu	hg19	4	74719566	74719566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PF4V1	NM_002620	exon2	c.G167A	p.R56K	GTCCCAGGCACAT	.	62.0	23.0	58.0	0.0	.	8	.	.	Atlas-SNP
CDKL2	8999	hgsc.bcm.edu	hg19	4	76551045	76551045	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CDKL2	NM_003948	exon2	c.T128C	p.M43T	TTAACCATTTTGT	.	133.0	54.0	104.0	0.0	.	58	.	.	Atlas-SNP
WDFY3	23001	hgsc.bcm.edu	hg19	4	85663040	85663040	+	Silent	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	WDFY3	NM_014991	exon38	c.A6108G	p.G2036G	GTAGCTTCCTCCA	.	93.0	38.0	86.0	0.0	.	314	.	.	Atlas-SNP
NDST3	9348	hgsc.bcm.edu	hg19	4	118975959	118975959	+	Silent	SNP	A	A	G	rs372361471		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	NDST3	NM_004784	exon2	c.A894G	p.T298T	GCTGACATTGTCC	.	60.0	23.0	69.0	0.0	.	107	.	.	Atlas-SNP
IL31RA	133396	hgsc.bcm.edu	hg19	5	55202077	55202077	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	IL31RA	NM_001242637	exon9	c.G1213C	p.E405Q	TCCTGGGAATCTG	.	54.0	25.0	57.0	0.0	.	84	.	.	Atlas-SNP
HTR1A	3350	hgsc.bcm.edu	hg19	5	63256420	63256420	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	HTR1A	NM_000524	exon1	c.A1127T	p.H376L	GGCATGTGGCAGC	.	63.0	24.0	61.0	0.0	.	128	.	.	Atlas-SNP
MTX3	345778	hgsc.bcm.edu	hg19	5	79287047	79287047	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	MTX3	NM_001010891	exon1	c.G15T	p.L5F	GAGTTCCAAGGGG	.	26.0	14.0	27.0	0.0	.	29	.	.	Atlas-SNP
FBXW11	23291	hgsc.bcm.edu	hg19	5	171296743	171296743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	FBXW11	NM_012300	exon11	c.G1457A	p.R486H	AATGTGCGCAAAC	.	46.0	22.0	48.0	0.0	.	72	.	.	Atlas-SNP
COL12A1	1303	hgsc.bcm.edu	hg19	6	75855116	75855116	+	Missense_Mutation	SNP	G	G	A	rs373216375		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	COL12A1	NM_004370	exon25	c.C4616T	p.T1539M	TACTCCGTGTTGG	.	24.0	17.0	34.0	0.0	.	385	.	.	Atlas-SNP
FGFR1OP	11116	hgsc.bcm.edu	hg19	6	167438330	167438330	+	Silent	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	FGFR1OP	NM_007045	exon9	c.A867G	p.L289L	CCCCTTAAAAAGT	.	30.0	23.0	80.0	0.0	.	24	.	.	Atlas-SNP
FAM220A	84792	hgsc.bcm.edu	hg19	7	6370386	6370386	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	.	NM_001037163	exon2	c.G400A	p.G134R	TGGGCCCTCCTCC	.	45.0	14.0	32.0	0.0	.	.	.	.	Atlas-SNP
GRM8	2918	hgsc.bcm.edu	hg19	7	126542649	126542649	+	Missense_Mutation	SNP	C	C	A	rs78947184	alternate_allele	TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	GRM8	NM_000845	exon5	c.G1103T	p.G368V	TTGCAGCCAAAAT	.	66.0	28.0	77.0	0.0	.	377	.	C|0.995;T|0.005	Atlas-SNP
XKR5	389610	hgsc.bcm.edu	hg19	8	6681084	6681084	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	XKR5	NM_207411	exon4	c.T596A	p.L199Q	TAGAACAGAACCA	.	85.0	36.0	82.0	0.0	.	20	.	.	Atlas-SNP
OPLAH	26873	hgsc.bcm.edu	hg19	8	145112593	145112593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	OPLAH	NM_017570	exon10	c.G1180A	p.A394T	GATTAGCATCCGT	.	48.0	22.0	58.0	0.0	.	78	.	.	Atlas-SNP
FAM108B1	51104	hgsc.bcm.edu	hg19	9	74481719	74481719	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	FAM108B1	NM_016014	exon4	c.A851C	p.E284A	ACCAGTTCCTGTG	.	31.0	12.0	40.0	0.0	.	24	.	.	Atlas-SNP
CDK5RAP2	55755	hgsc.bcm.edu	hg19	9	123199606	123199606	+	Silent	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CDK5RAP2	NM_018249	exon25	c.C3922T	p.L1308L	CCAGCAGCTCAGC	.	67.0	33.0	89.0	0.0	.	157	.	.	Atlas-SNP
ABCC8	6833	hgsc.bcm.edu	hg19	11	17418528	17418528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	ABCC8,NS,carcinoma,0,1	ABCC8	NM_000352	exon33	c.C4054T	p.R1352C	CGTAGCGCACGCT	.	81.0	26.0	99.0	0.0	.	170	.	.	Atlas-SNP
CTTN	2017	hgsc.bcm.edu	hg19	11	70260723	70260723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CTTN	NM_001184740	exon6	c.G367A	p.G123S	TTCGGAGGCAAGT	.	100.0	34.0	100.0	0.0	.	162	.	.	Atlas-SNP
PPM1H	57460	hgsc.bcm.edu	hg19	12	63083509	63083509	+	Silent	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PPM1H	NM_020700	exon8	c.C1215T	p.Y405Y	TTTAATGTAGATG	.	40.0	15.0	45.0	0.0	.	42	.	.	Atlas-SNP
STAB2	55576	hgsc.bcm.edu	hg19	12	104118857	104118857	+	Silent	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	STAB2,colon,carcinoma,0,2	STAB2	NM_017564	exon45	c.C4788T	p.R1596R	CTGCCGCGGCAGC	.	32.0	18.0	52.0	0.0	.	370	.	.	Atlas-SNP
TRPC4	7223	hgsc.bcm.edu	hg19	13	38248410	38248410	+	Silent	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	TRPC4	NM_003306	exon5	c.C1329T	p.S443S	ATATAAGGAGTTC	.	106.0	40.0	106.0	0.0	.	389	.	.	Atlas-SNP
SYT16	83851	hgsc.bcm.edu	hg19	14	62550927	62550927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SYT16	NM_031914	exon5	c.C1448T	p.P483L	GGTCTCCGCTCAG	.	57.0	27.0	54.0	0.0	.	144	.	.	Atlas-SNP
FLRT2	23768	hgsc.bcm.edu	hg19	14	86089513	86089513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	FLRT2	NM_013231	exon2	c.T1655C	p.I552T	CGGTGATATTTGT	.	73.0	25.0	88.0	0.0	.	168	.	.	Atlas-SNP
C15orf39	56905	hgsc.bcm.edu	hg19	15	75498804	75498804	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	C15orf39	NM_015492	exon2	c.T415C	p.C139R	CCTCTGTGCTATG	.	53.0	22.0	55.0	0.0	.	64	.	.	Atlas-SNP
SCNN1B	6338	hgsc.bcm.edu	hg19	16	23366664	23366664	+	Silent	SNP	T	T	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	SCNN1B	NM_000336	exon4	c.T630C	p.S210S	CACCAGTGCTACC	.	34.0	29.0	74.0	0.0	.	81	.	.	Atlas-SNP
MYH1	4619	hgsc.bcm.edu	hg19	17	10404676	10404676	+	Silent	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	MYH1	NM_005963	exon27	c.C3489A	p.A1163A	AATCTGGGCTGAG	.	40.0	26.0	100.0	0.0	.	403	.	.	Atlas-SNP
PSMD11	5717	hgsc.bcm.edu	hg19	17	30806343	30806343	+	Silent	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	PSMD11	NM_002815	exon10	c.C987T	p.N329N	TGATAACTTACTA	.	106.0	21.0	63.0	0.0	.	41	.	.	Atlas-SNP
BRCA1	672	hgsc.bcm.edu	hg19	17	41228578	41228578	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	BRCA1	NM_007300	exon14	c.G4474C	p.G1492R	AAAGGCCTTCTGG	.	75.0	29.0	81.0	0.0	.	304	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9057886	9057886	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	MUC16	NM_024690	exon3	c.G29560C	p.V9854L	TGAAAACAGTGGT	.	91.0	40.0	92.0	0.0	.	4315	.	.	Atlas-SNP
ELAVL3	1995	hgsc.bcm.edu	hg19	19	11577475	11577475	+	Silent	SNP	G	G	A	rs201270169	bycluster	TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ELAVL3	NM_032281	exon2	c.C177T	p.F59F	GCTGCCGAAGAGA	.	90.0	50.0	123.0	0.0	.	58	.	G|0.999;A|0.001	Atlas-SNP
CRLF1	9244	hgsc.bcm.edu	hg19	19	18707746	18707746	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CRLF1	NM_004750	exon5	c.A811T	p.K271X	GGTATTTGGCTTG	.	51.0	16.0	88.0	0.0	.	32	.	.	Atlas-SNP
ZNF419	79744	hgsc.bcm.edu	hg19	19	58004285	58004285	+	Silent	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ZNF419	NM_001098491	exon5	c.C363T	p.L121L	ACTGCTCAGTTCA	.	122.0	41.0	77.0	0.0	.	134	.	.	Atlas-SNP
ZNF256	10172	hgsc.bcm.edu	hg19	19	58453498	58453498	+	Silent	SNP	A	A	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ZNF256	NM_005773	exon3	c.T678C	p.R226R	CTGAACACGTACA	.	115.0	35.0	68.0	0.0	.	117	.	.	Atlas-SNP
GPCPD1	56261	hgsc.bcm.edu	hg19	20	5579378	5579378	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	GPCPD1	NM_019593	exon3	c.G139A	p.G47S	TTTCACCTGTGTC	.	82.0	30.0	73.0	0.0	.	52	.	.	Atlas-SNP
CLTCL1	8218	hgsc.bcm.edu	hg19	22	19168279	19168279	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CLTCL1	NM_007098	exon31	c.A4868T	p.E1623V	TGCTCCTCTTGCT	.	55.0	26.0	58.0	0.0	.	115	.	.	Atlas-SNP
RPS6KA3	6197	hgsc.bcm.edu	hg19	X	20206011	20206011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	RPS6KA3	NM_004586	exon9	c.C709T	p.P237S	CTTCTGGAGCCAT	.	177.0	71.0	202.0	0.0	.	110	.	.	Atlas-SNP
TSPAN7	7102	hgsc.bcm.edu	hg19	X	38525510	38525510	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	TSPAN7	NM_004615	exon2	c.G217C	p.G73R	GTCTTTGGCCTGT	.	121.0	43.0	92.0	0.0	.	33	.	.	Atlas-SNP
BCOR	54880	hgsc.bcm.edu	hg19	X	39922119	39922119	+	Silent	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	BCOR	NM_001123385	exon9	c.C4053A	p.T1351T	GTTGTCGGTGTAT	.	184.0	8.0	183.0	0.0	.	351	.	.	Atlas-SNP
HTR2C	3358	hgsc.bcm.edu	hg19	X	114141874	114141874	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	HTR2C	NM_000868	exon6	c.G1273T	p.E425X	GTGATCGAGAAAG	.	196.0	74.0	216.0	0.0	.	117	.	.	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	12769	12769	+	Missense_Mutation	SNP	G	G	A	rs28591518	bycluster	TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	.	ENST00000361567	exon1	c.G433A	p.E145K	GGCTGAGAGGGCG	.	360.0	210.0	709.0	2.0	.	.	.	.	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	13726	13726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	.	ENST00000361567	exon1	c.G1390A	p.A464T	CTATTCGCAGGAT	.	304.0	84.0	661.0	0.0	.	.	.	.	Atlas-SNP
CYP4F3	4051	hgsc.bcm.edu	hg19	19	15758035	15758046	+	In_Frame_Del	DEL	AAAGTGGAGCCG	AAAGTGGAGCCG	-	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	AAAGTGGAGCCG	AAAGTGGAGCCG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	CYP4F3	NM_001199209	exon5	c.425_436del	p.142_146del	.	.	48.0	12.0	67.0	0.0	.	69	.	.	Atlas-INDEL
HLA-B	3106	hgsc.bcm.edu	hg19	6	31324160	31324161	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.,1	HLA-B	NM_005514	exon3	c.403_404insT	p.R135fs	.	.	40.0	13.0	46.0	0.0	.	54	.	.	Atlas-INDEL
PCBP2	5094	hgsc.bcm.edu	hg19	12	53856277	53856278	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.,2	PCBP2	NM_005016	exon8	c.517_518insC	p.S173fs	.	.	33.0	10.0	21.0	0.0	.	38	.	.	Atlas-INDEL
ZNF134	7693	hgsc.bcm.edu	hg19	19	58132394	58132399	+	In_Frame_Del	DEL	CTTGTT	CTTGTT	-	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	CTTGTT	CTTGTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ZNF134	NM_003435	exon3	c.906_911del	p.302_304del	.	.	50.0	10.0	34.0	0.0	.	34	.	.	Atlas-INDEL
ANKHD1	54882	hgsc.bcm.edu	hg19	5	139903797	139903798	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ANKHD1	NM_017747	exon25	c.4464_4465insG	p.D1488fs	.	.	479.0	160.0	410.0	0.0	.	233	.	.	Atlas-INDEL
MYH4	4622	hgsc.bcm.edu	hg19	17	10353951	10353951	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	MYH4	NM_017533	exon30	c.4001delC	p.A1334fs	.	.	31.0	18.0	49.0	0.0	.	349	.	.	Atlas-Indel,Pindel
ADCY10	55811	hgsc.bcm.edu	hg19	1	167802265	167802267	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-FV-A23B-01A-11D-A16V-10	TCGA-FV-A23B-11A-11D-A16V-10	GAA	GAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	63adc09c-e1b1-40dd-9c35-2f8276b656fc	6c3072b0-3eb6-4a43-8a18-74e5a5869d4c	.	ADCY10	NM_018417	exon25	c.3552_3554del	p.1184_1185del	.	.	121.0	28.0	101.0	0.0	.	175	.	.	Atlas-Indel,Pindel