Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm OR10Z1 128368 hgsc.bcm.edu hg19 1 158576688 158576688 + Missense_Mutation SNP C C T novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . OR10Z1 NM_001004478 exon1 c.C460T p.L154F GGATACCTCTTTG . 171.0 44.0 135.0 0.0 . 99 . . Atlas-SNP SPTA1 6708 hgsc.bcm.edu hg19 1 158605719 158605719 + Missense_Mutation SNP C C G novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . SPTA1 NM_003126 exon38 c.G5416C p.E1806Q CCAACTCTTTGAG . 72.0 55.0 48.0 0.0 . 720 . . Atlas-SNP OR6K2 81448 hgsc.bcm.edu hg19 1 158670099 158670099 + Missense_Mutation SNP G G C novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . OR6K2 NM_001005279 exon1 c.C344G p.T115R ATAACTGTCAAGA . 103.0 56.0 90.0 0.0 . 104 . . Atlas-SNP DCAF6 55827 hgsc.bcm.edu hg19 1 167971772 167971772 + Missense_Mutation SNP C C T novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . DCAF6 NM_001198956 exon8 c.C956T p.T319I CAGATACTGGACC . 237.0 64.0 234.0 0.0 . 99 . . Atlas-SNP SHCBP1L 81626 hgsc.bcm.edu hg19 1 182873386 182873386 + Missense_Mutation SNP C C T novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . SHCBP1L NM_030933 exon8 c.G1516A p.E506K TTCCTTCACATTT . 111.0 24.0 75.0 0.0 . 64 . . Atlas-SNP HMCN1 83872 hgsc.bcm.edu hg19 1 186097385 186097385 + Missense_Mutation SNP C C T novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . HMCN1 NM_031935 exon83 c.C12866T p.P4289L CATTGCCCAAATT . 57.0 23.0 37.0 0.0 . 797 . . Atlas-SNP IFT172 26160 hgsc.bcm.edu hg19 2 27688641 27688641 + Missense_Mutation SNP T T G novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . IFT172 NM_015662 exon17 c.A1801C p.T601P TGGCTGTTCCAAA . 67.0 33.0 75.0 0.0 . 119 . . Atlas-SNP ABCG8 64241 hgsc.bcm.edu hg19 2 44099245 44099245 + Silent SNP G G T novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . ABCG8 NM_022437 exon7 c.G1095T p.T365T AGAGACGAAGGAT . 75.0 31.0 61.0 0.0 . 98 . . Atlas-SNP XIRP2 129446 hgsc.bcm.edu hg19 2 168100450 168100450 + Silent SNP T T C novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . XIRP2 NM_152381 exon9 c.T2548C p.L850L CAGCCATTAGACA . 135.0 55.0 173.0 0.0 . 914 . . Atlas-SNP XIRP2 129446 hgsc.bcm.edu hg19 2 168104420 168104420 + Missense_Mutation SNP G G T rs375925351 alternate_allele TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . XIRP2 NM_152381 exon9 c.G6518T p.G2173V CAGTTGGAGGAAC . 116.0 55.0 124.0 0.0 . 914 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179560596 179560596 + Silent SNP A A G novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . TTN NM_001267550 exon114 c.T31203C p.Y10401Y ACCTTCATAGACC . 190.0 85.0 236.0 0.0 . 18412 . . Atlas-SNP SF3B1 23451 hgsc.bcm.edu hg19 2 198267360 198267360 + Missense_Mutation SNP T T G rs374250186 alternate_allele TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd SF3B1,NS,malignant_melanoma,0,27 SF3B1 NM_012433 exon14 c.A1997C p.K666T ACAATCTTAATAC . 128.0 58.0 120.0 0.0 . 1038 . . Atlas-SNP TRAK2 66008 hgsc.bcm.edu hg19 2 202245316 202245316 + Missense_Mutation SNP C C G novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . TRAK2 NM_015049 exon16 c.G2695C p.A899P CTGGGGCAGCAAA . 99.0 42.0 118.0 0.0 . 62 . . Atlas-SNP HACL1 26061 hgsc.bcm.edu hg19 3 15604875 15604875 + Missense_Mutation SNP C C G rs149555880 bycluster;byfrequency;alternate_allele TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . HACL1 NM_012260 exon16 c.G1694C p.R565P GCCTTCCGTGTGG . 259.0 132.0 327.0 0.0 . 33 . C|1.000;T|0.000 Atlas-SNP KCNH8 131096 hgsc.bcm.edu hg19 3 19554731 19554731 + Silent SNP C C T novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . KCNH8 NM_144633 exon13 c.C2349T p.P783P TGACCCCCCCAAC . 99.0 31.0 130.0 0.0 . 189 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41266125 41266125 + Missense_Mutation SNP C C T rs121913413 bycluster TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd CTNNB1,gallbladder,other,+1,98 CTNNB1 NM_001098209 exon3 c.C122T p.T41I CCACTACCACAGC . 111.0 53.0 121.0 0.0 . 4904 . . Atlas-SNP TRAIP 10293 hgsc.bcm.edu hg19 3 49867199 49867199 + Missense_Mutation SNP C C T novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . TRAIP NM_005879 exon13 c.G1087A p.E363K GGGACTCCTGCAG . 19.0 11.0 31.0 0.0 . 47 . . Atlas-SNP ADAMTS9 56999 hgsc.bcm.edu hg19 3 64582656 64582656 + Silent SNP G G C novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . ADAMTS9 NM_182920 exon27 c.C4029G p.T1343T AGCACAGGTACTG . 60.0 33.0 72.0 0.0 . 206 . . Atlas-SNP CADM2 253559 hgsc.bcm.edu hg19 3 85984981 85984981 + Missense_Mutation SNP G G T novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . CADM2 NM_001167675 exon7 c.G765T p.L255F AATTTTGACTTGT . 213.0 93.0 218.0 0.0 . 195 . . Atlas-SNP PCDH7 5099 hgsc.bcm.edu hg19 4 30726038 30726038 + Silent SNP T T A novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . PCDH7 NM_032457 exon1 c.T2994A p.S998S CAAATCTAGTTCC . 64.0 22.0 42.0 0.0 . 215 . . Atlas-SNP SMIM14 201895 hgsc.bcm.edu hg19 4 39553765 39553765 + Missense_Mutation SNP G G A novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . . NM_174921 exon5 c.C281T p.P94L GGAGCTGGTGGAT . 205.0 88.0 251.0 1.0 . . . . Atlas-SNP GABRA2 2555 hgsc.bcm.edu hg19 4 46390684 46390684 + Missense_Mutation SNP G G T novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . GABRA2 NM_000807 exon2 c.C40A p.L14I CAAAAAGCAGGAA . 309.0 139.0 302.0 1.0 . 134 . . Atlas-SNP ANKRD17 26057 hgsc.bcm.edu hg19 4 73990633 73990633 + Silent SNP C C T novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . ANKRD17 NM_032217 exon18 c.G3489A p.Q1163Q TACCTCCTGTCTT . 45.0 18.0 57.0 0.0 . 214 . . Atlas-SNP ALB 213 hgsc.bcm.edu hg19 4 74279198 74279198 + Missense_Mutation SNP G G T novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . ALB NM_000477 exon8 c.G905T p.C302F AGGAATGCTGTGA . 69.0 30.0 62.0 0.0 . 132 . . Atlas-SNP ANXA3 306 hgsc.bcm.edu hg19 4 79494388 79494388 + Missense_Mutation SNP G G T novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . ANXA3 NM_005139 exon3 c.G70T p.A24S GTGGATGCTGAAG . 27.0 13.0 43.0 0.0 . 35 . . Atlas-SNP TENM3 55714 hgsc.bcm.edu hg19 4 183267884 183267884 + Missense_Mutation SNP C C T novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . . NM_001080477 exon2 c.C313T p.L105F ATGGGGCTCCCTC . 71.0 31.0 92.0 0.0 . . . . Atlas-SNP MYO10 4651 hgsc.bcm.edu hg19 5 16701447 16701447 + Silent SNP T T C rs372673284 alternate_allele TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . MYO10 NM_012334 exon25 c.A3057G p.R1019R ACTTGTTCGCTGG . 61.0 28.0 57.0 0.0 . 198 . . Atlas-SNP GDNF 2668 hgsc.bcm.edu hg19 5 37815756 37815756 + Silent SNP G G A rs121918536 bycluster;alternate_allele TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . GDNF NM_001190468 exon3 c.C684T p.I228I GAGTCAGATACAT . 93.0 25.0 112.0 0.0 . 56 . . Atlas-SNP SKIV2L2 23517 hgsc.bcm.edu hg19 5 54637586 54637586 + Silent SNP T T C novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . SKIV2L2 NM_015360 exon7 c.T768C p.Y256Y TCATTATATGAGA . 102.0 42.0 99.0 0.0 . 104 . . Atlas-SNP GRAMD3 65983 hgsc.bcm.edu hg19 5 125819257 125819257 + Missense_Mutation SNP A A C novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . GRAMD3 NM_001146319 exon9 c.A883C p.N295H TCTGAGAACTCTC . 43.0 18.0 39.0 0.0 . 30 . . Atlas-SNP NSD1 64324 hgsc.bcm.edu hg19 5 176562164 176562164 + Silent SNP G G A novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . NSD1 NM_022455 exon2 c.G60A p.V20V TCCAGTGAATTTA . 56.0 18.0 63.0 0.0 . 416 . . Atlas-SNP COL11A2 1302 hgsc.bcm.edu hg19 6 33144048 33144048 + Missense_Mutation SNP A A T novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . COL11A2 NM_080680 exon28 c.T2202A p.H734Q ACCCTTATGACCC . 82.0 36.0 81.0 0.0 . 124 . . Atlas-SNP SLC35B2 347734 hgsc.bcm.edu hg19 6 44223037 44223037 + Silent SNP G G A novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . SLC35B2 NM_178148 exon4 c.C705T p.Y235Y GTGTTCGTAGCTG . 63.0 28.0 77.0 0.0 . 40 . . Atlas-SNP FBXL4 26235 hgsc.bcm.edu hg19 6 99322272 99322272 + Missense_Mutation SNP G G T novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . FBXL4 NM_012160 exon9 c.C1748A p.S583Y TTACAAGATTCCA . 108.0 49.0 116.0 0.0 . 54 . . Atlas-SNP RPF2 84154 hgsc.bcm.edu hg19 6 111318428 111318428 + Missense_Mutation SNP G G A novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . RPF2 NM_032194 exon5 c.G277A p.G93S ATGTTTGGCTCCC . 95.0 36.0 122.0 0.0 . 26 . . Atlas-SNP PLEKHG1 57480 hgsc.bcm.edu hg19 6 151161944 151161944 + Missense_Mutation SNP T T G novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . PLEKHG1 NM_001029884 exon17 c.T4070G p.L1357R ACTATCTTTGGAG . 65.0 26.0 94.0 0.0 . 97 . . Atlas-SNP RSPH10B 222967 hgsc.bcm.edu hg19 7 5967916 5967916 + Silent SNP T T C novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . RSPH10B NM_173565 exon20 c.A2343G p.E781E GATAGCTTCTTCA . 465.0 135.0 667.0 0.0 . 28 . . Atlas-SNP MPP6 51678 hgsc.bcm.edu hg19 7 24705683 24705683 + Missense_Mutation SNP G G C novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . MPP6 NM_016447 exon9 c.G927C p.M309I AAAGATGATGTAT . 87.0 40.0 76.0 0.0 . 62 . . Atlas-SNP ABCB4 5244 hgsc.bcm.edu hg19 7 87051459 87051459 + Missense_Mutation SNP G G A novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . ABCB4 NM_018850 exon18 c.C2294T p.S765F AAAAAAGAAATAA . 273.0 76.0 195.0 0.0 . 177 . . Atlas-SNP PVRIG 79037 hgsc.bcm.edu hg19 7 99818613 99818613 + Nonsense_Mutation SNP C C A novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . PVRIG NM_024070 exon6 c.C720A p.C240X CAGCTGCCGCCCA . 102.0 30.0 100.0 0.0 . 20 . . Atlas-SNP PNPLA8 50640 hgsc.bcm.edu hg19 7 108131857 108131857 + Silent SNP A A T novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . PNPLA8 NM_001256008 exon7 c.T1680A p.P560P TACCTTAGGACAT . 147.0 56.0 115.0 0.0 . 82 . . Atlas-SNP C9orf170 401535 hgsc.bcm.edu hg19 9 89763702 89763702 + Silent SNP G G T novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . C9orf170 NM_001001709 exon1 c.G57T p.G19G CCTGGGGGTGTGG . 27.0 14.0 34.0 0.0 . 17 . . Atlas-SNP PSAP 5660 hgsc.bcm.edu hg19 10 73610968 73610968 + Missense_Mutation SNP A A T novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . PSAP NM_001042466 exon1 c.T11A p.L4H AGGAAGAGGGCGT . 56.0 32.0 54.0 0.0 . 43 . . Atlas-SNP PLEKHA1 59338 hgsc.bcm.edu hg19 10 124166157 124166157 + Missense_Mutation SNP G G T novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . PLEKHA1 NM_021622 exon5 c.G310T p.V104L GAATGGGTAAATG . 139.0 62.0 149.0 0.0 . 33 . . Atlas-SNP MOB2 81532 hgsc.bcm.edu hg19 11 1491556 1491556 + Missense_Mutation SNP C C T novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . MOB2 NM_001172223 exon5 c.G653A p.R218Q AACTCCCGAGCAA . 61.0 24.0 86.0 0.0 . 23 . . Atlas-SNP HNRNPUL2 221092 hgsc.bcm.edu hg19 11 62491884 62491884 + Missense_Mutation SNP T T G novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . HNRNPUL2 NM_001079559 exon2 c.A553C p.S185R TTTCACTATCCTG . 88.0 42.0 122.0 0.0 . 41 . . Atlas-SNP MRPL21 219927 hgsc.bcm.edu hg19 11 68664055 68664055 + Silent SNP C C G novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . MRPL21 NM_181514 exon4 c.G324C p.V108V AGAGGTCACCTTC . 69.0 30.0 77.0 0.0 . 13 . . Atlas-SNP NOX4 50507 hgsc.bcm.edu hg19 11 89069054 89069054 + Silent SNP C C G novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . NOX4 NM_016931 exon17 c.G1575C p.R525R TTTCCACCGAGGA . 418.0 181.0 455.0 0.0 . 101 . . Atlas-SNP TMTC1 83857 hgsc.bcm.edu hg19 12 29659790 29659790 + Missense_Mutation SNP C C T novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . TMTC1 NM_001193451 exon18 c.G2638A p.D880N TTTGATCCTTTTC . 119.0 47.0 149.0 0.0 . 147 . . Atlas-SNP KRT1 3848 hgsc.bcm.edu hg19 12 53071186 53071186 + Missense_Mutation SNP C C A novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . KRT1 NM_006121 exon5 c.G1042T p.D348Y TGCTGTCCAGGTC . 57.0 26.0 64.0 0.0 . 110 . . Atlas-SNP RAB3IP 117177 hgsc.bcm.edu hg19 12 70149324 70149324 + Missense_Mutation SNP T T G novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . RAB3IP NM_175623 exon2 c.T184G p.S62A CACCCTTCAGCTT . 106.0 37.0 84.0 0.0 . 48 . . Atlas-SNP PTPRQ 374462 hgsc.bcm.edu hg19 12 80933705 80933705 + Missense_Mutation SNP G G A novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . PTPRQ NM_001145026 exon17 c.G2620A p.V874I ATTGAAGTATACA . 62.0 26.0 80.0 0.0 . 119 . . Atlas-SNP TMPO 7112 hgsc.bcm.edu hg19 12 98938066 98938066 + Missense_Mutation SNP G G A novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . TMPO NM_001032283 exon5 c.G722A p.G241E AAGGCGGACCTCT . 112.0 57.0 117.0 0.0 . 111 . . Atlas-SNP KIAA1033 23325 hgsc.bcm.edu hg19 12 105557965 105557965 + Silent SNP G G A novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . KIAA1033 NM_015275 exon31 c.G3234A p.E1078E TAGAGAGAAATAC . 77.0 31.0 106.0 0.0 . 83 . . Atlas-SNP DNAH10 196385 hgsc.bcm.edu hg19 12 124377824 124377824 + Silent SNP C C T novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . DNAH10 NM_207437 exon52 c.C8686T p.L2896L TCTATCCTGAGTC . 67.0 28.0 90.0 0.0 . 888 . . Atlas-SNP ZMYM2 7750 hgsc.bcm.edu hg19 13 20567272 20567272 + Silent SNP G G A novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . ZMYM2 NM_001190964 exon4 c.G60A p.G20G ATTAGGGAGTACG . 123.0 54.0 99.0 0.0 . 191 . . Atlas-SNP FARP1 10160 hgsc.bcm.edu hg19 13 98896898 98896898 + Missense_Mutation SNP A A G novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . FARP1 NM_001001715 exon3 c.A325G p.T109A TCTTACACAAACT . 57.0 32.0 57.0 0.0 . 207 . . Atlas-SNP NOVA1 4857 hgsc.bcm.edu hg19 14 26917704 26917704 + Missense_Mutation SNP G G T novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . NOVA1 NM_002515 exon5 c.C985A p.L329I TGTTGAGATTATA . 20.0 11.0 26.0 0.0 . 146 . . Atlas-SNP TMEM260 0 hgsc.bcm.edu hg19 14 57070549 57070549 + Missense_Mutation SNP G G A novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . . NM_017799 exon4 c.G361A p.A121T TCATCTGCTGGAG . 174.0 67.0 223.0 0.0 . . . . Atlas-SNP SYT16 83851 hgsc.bcm.edu hg19 14 62550920 62550920 + Missense_Mutation SNP G G T novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . SYT16 NM_031914 exon5 c.G1441T p.G481W AGTGGAGGGTCTC . 71.0 26.0 81.0 0.0 . 144 . . Atlas-SNP PPP2R5E 5529 hgsc.bcm.edu hg19 14 63858560 63858560 + Nonsense_Mutation SNP C C T novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . PPP2R5E NM_006246 exon10 c.G929A p.W310X TTAGGCCAAAATT . 88.0 34.0 121.0 0.0 . 43 . . Atlas-SNP STON2 85439 hgsc.bcm.edu hg19 14 81737182 81737182 + Silent SNP A A C novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . STON2 NM_001256430 exon7 c.T2445G p.L815L GAGTTCAAGGTGG . 34.0 11.0 46.0 0.0 . 94 . . Atlas-SNP RPS6KA5 9252 hgsc.bcm.edu hg19 14 91338575 91338575 + Missense_Mutation SNP G G C novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . RPS6KA5 NM_004755 exon17 c.C2252G p.T751S GTACTGGTGCTAG . 224.0 108.0 215.0 0.0 . 135 . . Atlas-SNP DUOXA2 405753 hgsc.bcm.edu hg19 15 45408389 45408389 + Missense_Mutation SNP C C A novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . DUOXA2 NM_207581 exon3 c.C273A p.S91R CTTCAGCGCAGCG . 43.0 26.0 41.0 0.0 . 38 . . Atlas-SNP SETD1A 9739 hgsc.bcm.edu hg19 16 30977205 30977205 + Missense_Mutation SNP G G T novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . SETD1A NM_014712 exon8 c.G2003T p.R668L TGGACCGACTTGG . 113.0 48.0 113.0 0.0 . 143 . . Atlas-SNP DNAH2 146754 hgsc.bcm.edu hg19 17 7734001 7734001 + Missense_Mutation SNP A A G novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . DNAH2 NM_020877 exon78 c.A12071G p.Y4024C GCCTCTATCTCGA . 62.0 24.0 99.0 0.0 . 498 . . Atlas-SNP DLX4 1748 hgsc.bcm.edu hg19 17 48046980 48046980 + Missense_Mutation SNP C C T novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd DLX4,caecum,carcinoma,0,1 DLX4 NM_138281 exon1 c.C148T p.P50S TCCAGGCCGTATG . 26.0 12.0 33.0 0.0 . 25 . . Atlas-SNP VEZF1 7716 hgsc.bcm.edu hg19 17 56056601 56056601 + Silent SNP T T C novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . VEZF1 NM_007146 exon5 c.A1050G p.Q350Q TTGTTGTTGTTGC . 112.0 10.0 84.0 0.0 . 50 . . Atlas-SNP CD300LF 146722 hgsc.bcm.edu hg19 17 72700898 72700898 + Missense_Mutation SNP C C A rs146550147 TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . CD300LF NM_139018 exon2 c.G101T p.G34V AAGGAGCCCCGCT . 84.0 35.0 90.0 0.0 . 55 . C|1.000;A|0.000 Atlas-SNP SLC25A52 147407 hgsc.bcm.edu hg19 18 29339767 29339767 + Silent SNP G G A novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . . NM_001034172 exon1 c.C888T p.I296I TGCATTGATTATG . 131.0 46.0 132.0 0.0 . . . . Atlas-SNP SERPINB13 5275 hgsc.bcm.edu hg19 18 61255920 61255920 + Missense_Mutation SNP G G A rs139825462 TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd SERPINB13,NS,carcinoma,0,3 SERPINB13 NM_012397 exon2 c.G19A p.V7I GGCGCCGTCAGCA . 128.0 68.0 156.0 1.0 . 51 . G|1.000;A|0.000 Atlas-SNP SALL3 27164 hgsc.bcm.edu hg19 18 76754127 76754127 + Silent SNP C C T novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . SALL3 NM_171999 exon2 c.C2136T p.C712C GATCTGCGGCCGC . 21.0 9.0 33.0 0.0 . 162 . . Atlas-SNP CLEC17A 388512 hgsc.bcm.edu hg19 19 14705334 14705334 + Missense_Mutation SNP A A T novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . CLEC17A NM_207390 exon5 c.A283T p.S95C GGTTCAAGTGCTC . 66.0 31.0 57.0 0.0 . 27 . . Atlas-SNP JAK3 3718 hgsc.bcm.edu hg19 19 17950393 17950393 + Missense_Mutation SNP C C T novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . JAK3 NM_000215 exon10 c.G1334A p.R445Q TGGGGTCGGCTGA . 20.0 8.0 15.0 0.0 . 341 . . Atlas-SNP ZNF676 163223 hgsc.bcm.edu hg19 19 22363944 22363944 + Missense_Mutation SNP G G T novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . ZNF676 NM_001001411 exon3 c.C575A p.T192N TCTCCAGTATGAA . 55.0 29.0 46.0 0.0 . 146 . . Atlas-SNP HIPK4 147746 hgsc.bcm.edu hg19 19 40895613 40895613 + Missense_Mutation SNP T T C novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . HIPK4 NM_144685 exon1 c.A197G p.D66G TCAGGGTCTAGGC . 70.0 33.0 118.0 0.0 . 100 . . Atlas-SNP TBC1D17 79735 hgsc.bcm.edu hg19 19 50387721 50387721 + Missense_Mutation SNP G G A novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd TBC1D17,NS,carcinoma,0,1 TBC1D17 NM_024682 exon12 c.G1249A p.V417I GGCTACGTCCAGG . 80.0 39.0 87.0 0.0 . 39 . . Atlas-SNP ZSCAN5A 79149 hgsc.bcm.edu hg19 19 56735066 56735066 + Silent SNP T T C rs199886337 TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . ZSCAN5A NM_024303 exon3 c.A522G p.P174P TTCCCCTGGACGC . 32.0 16.0 44.0 0.0 . 118 . T|0.999;C|0.001 Atlas-SNP ZNF71 58491 hgsc.bcm.edu hg19 19 57133787 57133787 + Missense_Mutation SNP G G T novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . ZNF71 NM_021216 exon3 c.G1132T p.G378C CACACCGGCGAGA . 78.0 30.0 118.0 0.0 . 69 . . Atlas-SNP SCARF2 91179 hgsc.bcm.edu hg19 22 20784723 20784723 + Missense_Mutation SNP C C T novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . SCARF2 NM_182895 exon6 c.G1195A p.G399R GGGGCCCGTGGAC . 22.0 14.0 19.0 0.0 . 23 . . Atlas-SNP TRIOBP 11078 hgsc.bcm.edu hg19 22 38120914 38120914 + Missense_Mutation SNP A A G novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . TRIOBP NM_001039141 exon7 c.A2351G p.N784S CTCCCAATAGAGC . 138.0 69.0 148.0 0.0 . 262 . . Atlas-SNP EP300 2033 hgsc.bcm.edu hg19 22 41560092 41560092 + Missense_Mutation SNP A A T novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . EP300 NM_001429 exon22 c.A3764T p.H1255L AGATGCATCAGAT . 217.0 98.0 232.0 0.0 . 367 . . Atlas-SNP CPT1B 1375 hgsc.bcm.edu hg19 22 51010728 51010728 + Missense_Mutation SNP G G C novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . CPT1B NM_001145135 exon12 c.C1362G p.D454E GGATTTGTCAAAC . 34.0 16.0 54.0 0.0 . 61 . . Atlas-SNP GDPD2 54857 hgsc.bcm.edu hg19 X 69644840 69644840 + Silent SNP C C T novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . GDPD2 NM_017711 exon2 c.C6T p.A2A CATGGCCGAGTCC . 46.0 43.0 46.0 0.0 . 80 . . Atlas-SNP ND3 0 hgsc.bcm.edu hg19 MT 10390 10390 + Missense_Mutation SNP T T C novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . . ENST00000361227 exon1 c.T332C p.L111S AAGGATTAGACTG . 401.0 53.0 147.0 0.0 . . . . Atlas-SNP EIF3C 8663 hgsc.bcm.edu hg19 16 28734840 28734840 + Frame_Shift_Del DEL C C - novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . EIF3C NM_001199142 exon10 c.1007delA p.E336fs . . 729.0 112.0 801.0 0.0 . 8 . . Atlas-INDEL EIF3C 8663 hgsc.bcm.edu hg19 16 28403104 28403104 + Frame_Shift_Del DEL G G - novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . EIF3C NM_001267574 exon9 c.1013delT p.L338fs . . 644.0 67.0 799.0 0.0 . 8 . . Atlas-INDEL MAPKAPK2 9261 hgsc.bcm.edu hg19 1 206902164 206902166 + In_Frame_Del DEL GGA GGA - novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 GGA GGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . MAPKAPK2 NM_004759 exon2 c.388_390del p.130_130del . . 62.0 15.0 73.0 0.0 . 45 . . Atlas-Indel,Pindel HMBS 3145 hgsc.bcm.edu hg19 11 118963906 118963907 + Frame_Shift_Del DEL CT CT - novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 CT CT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . HMBS NM_000190 exon14 c.998_999del p.333_333del . . 31.0 14.0 26.0 0.0 . 27 . . Atlas-INDEL DCN 1634 hgsc.bcm.edu hg19 12 91558424 91558424 + Frame_Shift_Del DEL G G - novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd DCN,NS,carcinoma,0,3 DCN NM_133506 exon2 c.283delG p.E95fs . . 145.0 60.0 203.0 0.0 . 61 . . Atlas-Indel,Pindel GABRA2 2555 hgsc.bcm.edu hg19 4 46390679 46390679 + Frame_Shift_Del DEL A A - novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . GABRA2 NM_001114175 exon1 c.46delG p.V16fs . . 311.0 137.0 306.0 0.0 . 134 . . Atlas-Indel,Pindel MIR620 693205 hgsc.bcm.edu hg19 12 116586417 116586420 + RNA DEL TATA TATA - novel TCGA-EP-A26S-01A-11D-A16V-10 TCGA-EP-A26S-10A-01D-A16V-10 TATA TATA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 463bf060-8ba6-4a73-8173-172025f7b527 b2075602-828f-4788-9c30-978a3ca744bd . . . . . . . . 70.0 11.0 55.0 0.0 . . . . Pindel